HHsearch alignment for GI: 254781031 and conserved domain: COG2117
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=98.18 E-value=1.1e-05 Score=54.24 Aligned_cols=144 Identities=22% Similarity=0.178 Sum_probs=72.3
Q ss_pred EEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCC
Q ss_conf 89998096569999999997498399999767788777279999999999999888752035615875011032244433
Q gi|254781031|r 11 ALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSSL 90 (240)
Q Consensus 11 av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (240)
T Consensus 3 v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d--~~k~A~~tA~-----------~lgF~h~vl~Ldr~ile~-A~ 68 (198)
T COG2117 3 VYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVLD--SWKYARETAA-----------ILGFPHEVLQLDREILED-AV 68 (198)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CHHHHHHHHH-----------HHCCCCCEECCCHHHHHH-HH
T ss_conf 689844897105899999871787179998733466--4066899999-----------829970000168899999-99
Q ss_pred CCCHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 22201100012331011111112233377--7777433993651145444434555443024777776775306432167
Q gi|254781031|r 91 TKNVAMKIQDNNLPNTFVPGRNIIFLVFA--ATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTV 168 (240)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (240)
T Consensus 69 em~iedg~----------P~~aIq~iH~~alE~~A~r-~~~~iaDGTRRDDr------vP~ls~~--~~qSLEdR~nv~Y 129 (198)
T COG2117 69 EMIIEDGY----------PRNAIQYIHEMALEALASR-EVDRIADGTRRDDR------VPKLSRS--EAQSLEDRLNVQY 129 (198)
T ss_pred HHHHHCCC----------CCHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCC------CCCCCHH--HHHHHHHHCCCEE
T ss_conf 99985389----------8508899999999999877-78887578744566------7642498--8751887518645
Q ss_pred EEEECCCCHHHHHHHHHHH
Q ss_conf 7531389889999999982
Q gi|254781031|r 169 HTPLMWLKKYETWKLAQDI 187 (240)
Q Consensus 169 ~~P~~~~tK~eI~~~~~~~ 187 (240)
T Consensus 130 i~PL~G~G~kti~~Lv~~~ 148 (198)
T COG2117 130 IRPLLGLGYKTIRRLVSAI 148 (198)
T ss_pred ECCCCCCCHHHHHHHHHHH
T ss_conf 5303344678999998877