HHsearch alignment for GI: 254781031 and conserved domain: TIGR00342
>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=99.66 E-value=6.1e-16 Score=117.87 Aligned_cols=172 Identities=20% Similarity=0.157 Sum_probs=113.0
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH----HHHCCCCCEEEECHHH
Q ss_conf 599489998096569999999997498399999767788777279999999999999888----7520356158750110
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPK----WKDSLGEDHILPLAIL 82 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 82 (240)
T Consensus 185 ~~Gkvl~LlSGGiDSPVAaf~~m~RGc~V~~vhf~~~~~~---~~---~~~~kv~~la~~~~~~~~~~~~~l~~~~F~~~ 258 (391)
T TIGR00342 185 TQGKVLALLSGGIDSPVAAFLAMKRGCRVVAVHFFNEPAA---SE---KAREKVERLANLLSLNETGGSVKLYVVDFTDV 258 (391)
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC---CH---HHHHHHHHHHHHHHHCCCEEEEEEEEECHHHH
T ss_conf 2536320411883516799999663877999973288552---46---89999999999885400037999998543899
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 32244433222011000123310111111122333777777433993651145444434555443024777776775306
Q gi|254781031|r 83 GDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGM 162 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
T Consensus 259 ~~~~------------~~~~~e~~~~v~~rR~M~~~A~~~ae~~g~~A~VTGe~LGQVASQT---------L~Nl~vI~~ 317 (391)
T TIGR00342 259 QEEI------------IEIIPEKYTMVLCRRLMLKIASKVAEKEGCLAIVTGESLGQVASQT---------LENLRVIQA 317 (391)
T ss_pred HHHH------------HHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH---------HHHHHHHHH
T ss_conf 9999------------8418998788740667999999888860994899766342037778---------889999972
Q ss_pred CCCEEEEE-EECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCC
Q ss_conf 43216775-3138988999999998282000143255372162888
Q gi|254781031|r 163 ESHVTVHT-PLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGK 207 (240)
Q Consensus 163 ~~~~~i~~-P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~ 207 (240)
T Consensus 318 ~~~~~iL~RPLIg~DK~~Ii~~Ak~IgTyeiSi~~~~--~Cc~~~~ 361 (391)
T TIGR00342 318 VVNTPILRRPLIGMDKEEIIELAKEIGTYEISIEPHE--DCCTIFK 361 (391)
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCC--CCCCEEC
T ss_conf 3787424077554797899999741396214441257--8863002