HHsearch alignment for GI: 254781031 and conserved domain: TIGR00364
>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=100.00 E-value=0 Score=316.27 Aligned_cols=206 Identities=44% Similarity=0.779 Sum_probs=183.0
Q ss_pred EEEEEECCHHHHHHHHHHHHCC--CEEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCE-EEECHHHCCCC
Q ss_conf 8999809656999999999749--8399999767788-777279999999999999888752035615-87501103224
Q gi|254781031|r 11 ALLLFSGGQDSSTCLSWALDRF--DRVETLSFDYGQR-NKVELECRLCVRKKIVELMPKWKDSLGEDH-ILPLAILGDIS 86 (240)
Q Consensus 11 av~l~SGGlDS~~~l~~l~~~~--~~v~~i~~~ygq~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 86 (240)
T Consensus 1 Av~~lSGG~DStT~~~~a~~~~GkyeV~a~TF~YGQR~H~~Ele~A~~ia~~Lg----------i~~~~~~Dl~~l~~l~ 70 (227)
T TIGR00364 1 AVVVLSGGQDSTTVLLIALDEGGKYEVHAITFDYGQRAHSRELESARKIAEALG----------IRHHFVIDLSLLKQLG 70 (227)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHC----------CCCEEEECHHHHHHHH
T ss_conf 968743734689999999961795079985465013789999999999999808----------9707861779998554
Q ss_pred C-CCCCCCHHHHHC---C-------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 4-433222011000---1-------2331011111112233377777743399365114544443455544302477777
Q gi|254781031|r 87 H-SSLTKNVAMKIQ---D-------NNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIE 155 (240)
Q Consensus 87 ~-~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 155 (240)
T Consensus 71 ~YsaLt~~~~~~~~~~~e~d~~~~~E~~p~tfVPgRN~~fl~~a~~yA~~~gA~~v~~G~~~~DfSgYPDCr~EFvka~n 150 (227)
T TIGR00364 71 KYSALTDEQEIPEQKSNEEDKEKALETLPNTFVPGRNLIFLSLAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKALN 150 (227)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 04523578756766665320235653113333780479999999998886184252200100036579888688999999
Q ss_pred HHHHHC-CCCCEEE-----EEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 677530-6432167-----75313898899999999828200014325537216288865555668899868778999
Q gi|254781031|r 156 TAINLG-MESHVTV-----HTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLR 227 (240)
Q Consensus 156 ~~~~~~-~~~~~~i-----~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R 227 (240)
T Consensus 151 ~~l~Lgn~~~~v~i~Piql~aPL~~ltKaeiv~la~elG-kk~l~lv~~~T~sCY~G~~~ilhad~~~Cg~C~sC~lR 227 (227)
T TIGR00364 151 HALNLGNMLTPVEIRPIQLEAPLMDLTKAEIVKLADELG-KKLLDLVIKETYSCYAGGRKILHADGDGCGKCESCMLR 227 (227)
T ss_pred HHHHHHCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHC-CCEEEEEECCCCHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 999974126881120246666701269899999988735-11231100011111316730564237887987435579