HHsearch alignment for GI: 254781031 and conserved domain: TIGR00364

>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=100.00  E-value=0  Score=316.27  Aligned_cols=206  Identities=44%  Similarity=0.779  Sum_probs=183.0

Q ss_pred             EEEEEECCHHHHHHHHHHHHCC--CEEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCE-EEECHHHCCCC
Q ss_conf             8999809656999999999749--8399999767788-777279999999999999888752035615-87501103224
Q gi|254781031|r   11 ALLLFSGGQDSSTCLSWALDRF--DRVETLSFDYGQR-NKVELECRLCVRKKIVELMPKWKDSLGEDH-ILPLAILGDIS   86 (240)
Q Consensus        11 av~l~SGGlDS~~~l~~l~~~~--~~v~~i~~~ygq~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   86 (240)
T Consensus         1 Av~~lSGG~DStT~~~~a~~~~GkyeV~a~TF~YGQR~H~~Ele~A~~ia~~Lg----------i~~~~~~Dl~~l~~l~   70 (227)
T TIGR00364         1 AVVVLSGGQDSTTVLLIALDEGGKYEVHAITFDYGQRAHSRELESARKIAEALG----------IRHHFVIDLSLLKQLG   70 (227)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHC----------CCCEEEECHHHHHHHH
T ss_conf             968743734689999999961795079985465013789999999999999808----------9707861779998554


Q ss_pred             C-CCCCCCHHHHHC---C-------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             4-433222011000---1-------2331011111112233377777743399365114544443455544302477777
Q gi|254781031|r   87 H-SSLTKNVAMKIQ---D-------NNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIE  155 (240)
Q Consensus        87 ~-~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~  155 (240)
T Consensus        71 ~YsaLt~~~~~~~~~~~e~d~~~~~E~~p~tfVPgRN~~fl~~a~~yA~~~gA~~v~~G~~~~DfSgYPDCr~EFvka~n  150 (227)
T TIGR00364        71 KYSALTDEQEIPEQKSNEEDKEKALETLPNTFVPGRNLIFLSLAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKALN  150 (227)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             04523578756766665320235653113333780479999999998886184252200100036579888688999999


Q ss_pred             HHHHHC-CCCCEEE-----EEEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             677530-6432167-----75313898899999999828200014325537216288865555668899868778999
Q gi|254781031|r  156 TAINLG-MESHVTV-----HTPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLR  227 (240)
Q Consensus       156 ~~~~~~-~~~~~~i-----~~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R  227 (240)
T Consensus       151 ~~l~Lgn~~~~v~i~Piql~aPL~~ltKaeiv~la~elG-kk~l~lv~~~T~sCY~G~~~ilhad~~~Cg~C~sC~lR  227 (227)
T TIGR00364       151 HALNLGNMLTPVEIRPIQLEAPLMDLTKAEIVKLADELG-KKLLDLVIKETYSCYAGGRKILHADGDGCGKCESCMLR  227 (227)
T ss_pred             HHHHHHCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHC-CCEEEEEECCCCHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf             999974126881120246666701269899999988735-11231100011111316730564237887987435579