HHsearch alignment for GI: 254781031 and conserved domain: TIGR00420

>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=99.05  E-value=1.4e-09  Score=78.45  Aligned_cols=170  Identities=14%  Similarity=0.036  Sum_probs=105.3

Q ss_pred             CCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCH---------HHHHHHH-HHHHHHHHHHHHCCCCCEEEE
Q ss_conf             948999809656999999999749839999976778877727---------9999999-999999888752035615875
Q gi|254781031|r    9 PSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVEL---------ECRLCVR-KKIVELMPKWKDSLGEDHILP   78 (240)
Q Consensus         9 ~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~---------~~a~~~~-~~~~~~~~~~~~~~~~~~~~~   78 (240)
T Consensus         1 ~kv~VglSGGVDSSVsA~lL~~qg~~v~G~ylk~W~~~~~~d~~GH~~~N~~K~~C~~~~dl~~a~~ic~~LGi~l~~~n   80 (394)
T TIGR00420         1 KKVIVGLSGGVDSSVSAYLLKQQGYEVVGVYLKNWDEDEKNDILGHKKINENKSGCSSAEDLRDAQAICEKLGIPLEKVN   80 (394)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             94899806854789999999714965899987765124666644316562467788368879999999985598189855


Q ss_pred             CHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-C--CCCEEECCCCCCCC-CCCC----------
Q ss_conf             01103224443322201100012331011111112233377777743-3--99365114544443-4555----------
Q gi|254781031|r   79 LAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYR-L--GITNIVIGVCETDY-SGYP----------  144 (240)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~--g~~~i~~~~~~~~~-~~~~----------  144 (240)
T Consensus        81 f~~--~Y~~~Vf~~~i~~y~~G~TPnPDi~CN~~iKFG~~-~e~~~~~~Gtg~~~~aTGHYAr~~q~~~~~~~~~L~~~~  157 (394)
T TIGR00420        81 FQK--EYWNKVFEPFIQEYKEGLTPNPDILCNKLIKFGLL-LEYAKQLLGTGNDKIATGHYARIAQEIENKSLFELLRAL  157 (394)
T ss_pred             HHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH-HHHHHHHCCCCCCEEECCHHHHHHHHHCCCCHHHHHCCC
T ss_conf             078--87888889999987367777862004712003789-999998528995434424476544342131014443046


Q ss_pred             ----CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             ----44302477777677530643216775313898899999999828
Q gi|254781031|r  145 ----DCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       145 ----~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~  188 (240)
T Consensus       158 D~~KDQ-SYFL~~l~~~~------~~~~~FPlG~L~K~~vR~iA~~~~  198 (394)
T TIGR00420       158 DKNKDQ-SYFLYHLSQEQ------LAKLLFPLGELLKPEVRQIAKNAG  198 (394)
T ss_pred             CCCCCC-HHHHHHHHHHH------HHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf             788861-17376401898------887505301036778999998648