HHsearch alignment for GI: 254781031 and conserved domain: TIGR02039
>TIGR02039 CysD sulfate adenylyltransferase, small subunit; InterPro: IPR011784 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through reaction of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS). In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids. Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules.; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0019421 sulfate reduction APS pathway.
Probab=98.09 E-value=7.7e-05 Score=49.05 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=84.5
Q ss_pred CCHHHCCCCCEEEEEECCHHHHHHHHHHHHCCC----EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 912213599489998096569999999997498----3999997677887772799999999999998887520356158
Q gi|254781031|r 1 MNDIIKKAPSALLLFSGGQDSSTCLSWALDRFD----RVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHI 76 (240)
Q Consensus 1 ~~~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~----~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (240)
T Consensus 12 ~REvaa~F~~PV~LyS~GKDS~VlLHLA~KaF~Pg~~PFplLHvDTgw~--f~---------E~~~fRD~~~~~~~~~L~ 80 (295)
T TIGR02039 12 IREVAAEFERPVLLYSIGKDSSVLLHLARKAFYPGRLPFPLLHVDTGWK--FR---------EMIAFRDELVAKYGLELI 80 (295)
T ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCC--HH---------HHHHHHHHHHHHHCCEEE
T ss_conf 9987630379768986573479999987640588887973577406632--78---------999999999987097688
Q ss_pred EECHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCC--------------
Q ss_conf 750110322444332220110001233101111111223337777774-33993651145444434--------------
Q gi|254781031|r 77 LPLAILGDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAY-RLGITNIVIGVCETDYS-------------- 141 (240)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~g~~~i~~~~~~~~~~-------------- 141 (240)
T Consensus 81 v~~~~~~~~-------------~g~~P~~~~~~~~~~~~~T~~L~~Al~~~~FDAa~gGARRdEE~sRaKERifS~R~~~ 147 (295)
T TIGR02039 81 VHSNEEGIA-------------EGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRDAF 147 (295)
T ss_pred EEECHHHHH-------------HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCEEHHCCCC
T ss_conf 850502354-------------1566201012455555631899999873388656316631344301201000100345
Q ss_pred ---CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf ---555443024777776775306432167753138988999999998
Q gi|254781031|r 142 ---GYPDCRHDTIRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQD 186 (240)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~ 186 (240)
T Consensus 148 h~WDPk~QRPELW~~YNg~~~--~GE~~RvF-PLSNwTE~DiW~Y~~~ 192 (295)
T TIGR02039 148 HQWDPKKQRPELWNLYNGRIS--KGESVRVF-PLSNWTELDIWRYIAA 192 (295)
T ss_pred CCCCCCCCCHHHHHHCCCCCC--CCCEEEEE-CCCCCCHHHHHHHHHH
T ss_conf 788851257377875052346--88726872-2666504458988743