HHsearch alignment for GI: 254781031 and conserved domain: cd01995
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=100.00 E-value=1.4e-45 Score=302.18 Aligned_cols=169 Identities=46% Similarity=0.813 Sum_probs=154.3
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCC
Q ss_conf 48999809656999999999749839999976778877727999999999999988875203561587501103224443
Q gi|254781031|r 10 SALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDISHSS 89 (240)
Q Consensus 10 ~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (240)
T Consensus 1 kavvllSGGlDSt~~l~~~~~~g~~v~~l~~dYGQr~~~E~~~a~~i~~~l~---------------------------- 52 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG---------------------------- 52 (169)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHC----------------------------
T ss_conf 9899907878899999999984996999997569854999999999999968----------------------------
Q ss_pred CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 32220110001233101111111223337777774339936511454444345554430247777767753064321677
Q gi|254781031|r 90 LTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHVTVH 169 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 169 (240)
T Consensus 53 --------------~~~~VP~RN~ifls~A~~~A~~~g~~~v~~G~~~~d~~~ypDc~~~F~~a~~~~~~~~~~~~v~i~ 118 (169)
T cd01995 53 --------------PSTYVPARNLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGIKIH 118 (169)
T ss_pred --------------CCCEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf --------------994652838999999999999829996899982477568999869999999999983087985898
Q ss_pred EEECCCCHHHHHHHHHHHCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 5313898899999999828200014325537216288865555668899868778999999997
Q gi|254781031|r 170 TPLMWLKKYETWKLAQDIGGQDLVNLILEESHTCYLGKRDKRYEWGYGCNSCPACYLRQKGWME 233 (240)
Q Consensus 170 ~P~~~~tK~eI~~~~~~~~~~~~~~~~~~~T~SC~~~~~~~~~~~~~hCG~C~~C~~R~~af~~ 233 (240)
T Consensus 119 aP~~~~~K~eiv~~g~~lg------v~~~~T~SCy~g~~-------~~CG~C~sC~~R~~aF~e 169 (169)
T cd01995 119 APLIDLSKAEIVRLGGELG------VPLELTWSCYNGGE-------KHCGECDSCLLRKRAFEE 169 (169)
T ss_pred ECCCCCCHHHHHHHHHHCC------CCHHHCCCCCCCCC-------CCCCCCHHHHHHHHHHCC
T ss_conf 4333598999999998849------97998215779998-------989899779999999639