HHsearch results for GI: 254781031 and protein with PDBid: 1vbk_A
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=99.26 E-value=1.6e-11 Score=89.21 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=79.7
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--EEEECHHHCC
Q ss_conf 59948999809656999999999749839999976778877727999999999999988875203561--5875011032
Q gi|254781031|r 7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGED--HILPLAILGD 84 (240)
Q Consensus 7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 84 (240)
..+++++|+|||+ |.+++|+++++|.+|+++||+.+ +...+ ++.+....+..+.... +.++..
T Consensus 178 s~Gk~l~LlSGGi-SpVAa~~~mKRG~~v~~v~f~~~---~~~~~-------kv~~l~~~l~~~~~~~~~~~~~~~---- 242 (307)
T 1vbk_A 178 TEGRMIGILHDEL-SALAIFLMMKRGVEVIPVYIGKD---DKNLE-------KVRSLWNLLKRYSYGSKGFLVVAE---- 242 (307)
T ss_dssp TTCEEEEECSSHH-HHHHHHHHHHBTCEEEEEEESCS---SHHHH-------HHHHHHHHHHTTCTTSCCCCEEES----
T ss_pred CCCCEEEEECCCC-CHHHHHHHHHCCCEEEEEEECCC---HHHHH-------HHHHHHHHHHHHCCCCCEEEEECC----
T ss_conf 7783589833773-09999999966988999996897---88999-------999999999975899847999767----
Q ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 24443322201100012331011111112233377777743399365114544443455544302477777677530643
Q gi|254781031|r 85 ISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMES 164 (240)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (240)
.+......+...++..+.+|.+-++.+..+.+ +.......
T Consensus 243 ------------------------------~~~~~~~ia~~~~~~~ivtGeslgQVaSQt~n----------~~~~~~~~ 282 (307)
T 1vbk_A 243 ------------------------------SFDRVLKLIRDFGVKGVIKGLRPNDLNSEVSE----------ITEDFKMF 282 (307)
T ss_dssp ------------------------------SHHHHHHHHHHHTCCEEECCCCGGGCCTTCHH----------HHHHHHHC
T ss_pred ------------------------------CHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH----------HHHHHHCC
T ss_conf ------------------------------68999999998499899935152588999998----------99998415
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 216775313898899999999828
Q gi|254781031|r 165 HVTVHTPLMWLKKYETWKLAQDIG 188 (240)
Q Consensus 165 ~~~i~~P~~~~tK~eI~~~~~~~~ 188 (240)
...|++|++.++|.||++.+++.|
T Consensus 283 ~~pi~RPLig~DK~EIi~~Ar~IG 306 (307)
T 1vbk_A 283 PVPVYYPLIALPEEYIKSVKERLG 306 (307)
T ss_dssp SSCEECHHHHSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 987024837899899999999868