HHsearch results for GI: 254781031 and protein with PDBid: 2der_A
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.52 E-value=1.2e-13 Score=102.34 Aligned_cols=177 Identities=19% Similarity=0.079 Sum_probs=103.6
Q ss_pred HHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 22135994899980965699999999974983999997677887772799999999999998887520356158750110
Q gi|254781031|r 3 DIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAIL 82 (240)
Q Consensus 3 ~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (240)
.|+++.||++|.+|||+||++.|++|+++|++|+++|+..+..... .......+.+.+..........++++++....
T Consensus 12 ~m~~~~kkV~V~mSGGVDSsvaa~lL~~qG~~V~gv~m~~~~~~~~--~~~c~~~~d~~~a~~va~~LgIp~~~~d~~~~ 89 (380)
T 2der_A 12 SMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG--EEYCTAAADLADAQAVCDKLGIELHTVNFAAE 89 (380)
T ss_dssp -----CCEEEEECCSCSTTHHHHHHHHTTCCEEEEEEEECCCCCSH--HHHHHHHHHHHHHHHHHHHHTCCEEEEECHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 5776688799987786999999999997799689999988768876--67888467899999999984997799450897
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC------------CCCCCCHHH
Q ss_conf 32244433222011000123310111111122333777777433993651145444434------------555443024
Q gi|254781031|r 83 GDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYS------------GYPDCRHDT 150 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~------------~~~~~~~~~ 150 (240)
.. ......-.........+.-.....+...+-....-.+...|++.+++|..+.... ...|.+.+
T Consensus 90 f~--~~V~~~f~~~y~~G~TPNPcv~CN~~iKf~~ll~~a~~~~g~d~iATGHYAr~~~~~~~~~L~r~~D~~KDQSYf- 166 (380)
T 2der_A 90 YW--DNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYF- 166 (380)
T ss_dssp HH--HHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGG-
T ss_pred HH--HHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCEEECCEEEEEECCCCCEEEEECCCCCCCCEEE-
T ss_conf 62--224577799987589998540113332289999999986699856000379997589957788527777784467-
Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 7777767753064321677531389889999999982820
Q gi|254781031|r 151 IRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQ 190 (240)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~ 190 (240)
+.......--++..|+-.++|.||.+++.+++..
T Consensus 167 ------L~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~ 200 (380)
T 2der_A 167 ------LYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLV 200 (380)
T ss_dssp ------GSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC
T ss_pred ------EEEECHHHHCCEEECCCCCCHHHHHHHHHHCCCC
T ss_conf ------6543576505547689788557899999986997