HHsearch results for GI: 254781031 and protein with PDBid: 2der_A

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.52  E-value=1.2e-13  Score=102.34  Aligned_cols=177  Identities=19%  Similarity=0.079  Sum_probs=103.6

Q ss_pred             HHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf             22135994899980965699999999974983999997677887772799999999999998887520356158750110
Q gi|254781031|r    3 DIIKKAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAIL   82 (240)
Q Consensus         3 ~~~~~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (240)
                      .|+++.||++|.+|||+||++.|++|+++|++|+++|+..+.....  .......+.+.+..........++++++....
T Consensus        12 ~m~~~~kkV~V~mSGGVDSsvaa~lL~~qG~~V~gv~m~~~~~~~~--~~~c~~~~d~~~a~~va~~LgIp~~~~d~~~~   89 (380)
T 2der_A           12 SMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG--EEYCTAAADLADAQAVCDKLGIELHTVNFAAE   89 (380)
T ss_dssp             -----CCEEEEECCSCSTTHHHHHHHHTTCCEEEEEEEECCCCCSH--HHHHHHHHHHHHHHHHHHHHTCCEEEEECHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf             5776688799987786999999999997799689999988768876--67888467899999999984997799450897


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC------------CCCCCCHHH
Q ss_conf             32244433222011000123310111111122333777777433993651145444434------------555443024
Q gi|254781031|r   83 GDISHSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYS------------GYPDCRHDT  150 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~------------~~~~~~~~~  150 (240)
                      ..  ......-.........+.-.....+...+-....-.+...|++.+++|..+....            ...|.+.+ 
T Consensus        90 f~--~~V~~~f~~~y~~G~TPNPcv~CN~~iKf~~ll~~a~~~~g~d~iATGHYAr~~~~~~~~~L~r~~D~~KDQSYf-  166 (380)
T 2der_A           90 YW--DNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYF-  166 (380)
T ss_dssp             HH--HHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGG-
T ss_pred             HH--HHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCEEECCEEEEEECCCCCEEEEECCCCCCCCEEE-
T ss_conf             62--224577799987589998540113332289999999986699856000379997589957788527777784467-


Q ss_pred             HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             7777767753064321677531389889999999982820
Q gi|254781031|r  151 IRAIETAINLGMESHVTVHTPLMWLKKYETWKLAQDIGGQ  190 (240)
Q Consensus       151 ~~~~~~~~~~~~~~~~~i~~P~~~~tK~eI~~~~~~~~~~  190 (240)
                            +.......--++..|+-.++|.||.+++.+++..
T Consensus       167 ------L~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~  200 (380)
T 2der_A          167 ------LYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLV  200 (380)
T ss_dssp             ------GSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC
T ss_pred             ------EEEECHHHHCCEEECCCCCCHHHHHHHHHHCCCC
T ss_conf             ------6543576505547689788557899999986997