HHSEARCH alignment of GI: 254781031 and SCOP domain: d1vbka1

Alignment
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.34  E-value=6.7e-12  Score=90.01  Aligned_cols=129  Identities=13%  Similarity=0.044  Sum_probs=79.2

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC
Q ss_conf             59948999809656999999999749839999976778877727999999999999988875203561587501103224
Q gi|254781031|r    7 KAPSALLLFSGGQDSSTCLSWALDRFDRVETLSFDYGQRNKVELECRLCVRKKIVELMPKWKDSLGEDHILPLAILGDIS   86 (240)
Q Consensus         7 ~~~~av~l~SGGlDS~~~l~~l~~~~~~v~~i~~~ygq~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (240)
                      ...|+|+|+|||+ |.+++|+++++|.+|+++||+.+++   ..+.+..++       ..+..+......          
T Consensus         3 t~Gk~l~LlSGGi-SpVAa~lmmkRG~~V~~v~f~~~~~---~~ekv~~l~-------~~L~~y~~~~~~----------   61 (132)
T d1vbka1           3 TEGRMIGILHDEL-SALAIFLMMKRGVEVIPVYIGKDDK---NLEKVRSLW-------NLLKRYSYGSKG----------   61 (132)
T ss_dssp             TTCEEEEECSSHH-HHHHHHHHHHBTCEEEEEEESCSSH---HHHHHHHHH-------HHHHTTCTTSCC----------
T ss_pred             CCCEEEEEECCCC-HHHHHHHHHHCCCEEEEEEECCCHH---HHHHHHHHH-------HHHHHHCCCCCC----------
T ss_conf             6762888633784-2999999997798799999718888---999999999-------999984899872----------


Q ss_pred             CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             44332220110001233101111111223337777774339936511454444345554430247777767753064321
Q gi|254781031|r   87 HSSLTKNVAMKIQDNNLPNTFVPGRNIIFLVFAATLAYRLGITNIVIGVCETDYSGYPDCRHDTIRAIETAINLGMESHV  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                           .            ......     .....-+|..+++..+.+|...+......+.   ..   .++.    ..+.
T Consensus        62 -----~------------~~v~~~-----~~~~~riA~~~~a~~ivtG~~~e~vgqvasq---t~---~~~~----~~~~  109 (132)
T d1vbka1          62 -----F------------LVVAES-----FDRVLKLIRDFGVKGVIKGLRPNDLNSEVSE---IT---EDFK----MFPV  109 (132)
T ss_dssp             -----C------------CEEESS-----HHHHHHHHHHHTCCEEECCCCGGGCCTTCHH---HH---HHHH----HCSS
T ss_pred             -----E------------EEEEEH-----HHHHHHHHHHHHHHCEEEEEECCCHHHHHHH---HH---HHHH----CCCC
T ss_conf             -----8------------999508-----9999999999646264888735621018899---99---9986----3066


Q ss_pred             EEEEEECCCCHHHHHHHHHHHC
Q ss_conf             6775313898899999999828
Q gi|254781031|r  167 TVHTPLMWLKKYETWKLAQDIG  188 (240)
Q Consensus       167 ~i~~P~~~~tK~eI~~~~~~~~  188 (240)
                      .|.+|++.++|.||++.++++|
T Consensus       110 pIlRPLi~~DK~EIi~~Ar~IG  131 (132)
T d1vbka1         110 PVYYPLIALPEEYIKSVKERLG  131 (132)
T ss_dssp             CEECHHHHSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHC
T ss_conf             2102867899999999999858


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ThiI-like
domain: Hypothetical protein PH1313, C-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]