Query gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 118 No_of_seqs 107 out of 1297 Neff 6.6 Searched_HMMs 23785 Date Tue May 31 23:58:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781032.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2oba_A Probable 6-pyruvoyl tet 100.0 0 0 280.3 12.3 117 1-117 21-137 (138) 2 2g64_A Putative 6-pyruvoyl tet 100.0 3.8E-44 0 255.8 11.7 116 2-117 8-139 (140) 3 1b66_A 6-pyruvoyl tetrahydropt 100.0 3.6E-44 0 255.9 11.5 117 1-117 7-139 (140) 4 3d7j_A Uncharacterized protein 100.0 2.1E-43 0 251.9 11.0 116 1-117 22-150 (152) 5 2dj6_A Hypothetical protein PH 100.0 6.7E-41 2.8E-45 238.5 10.5 109 1-116 3-114 (115) 6 3jyg_A Uncharacterized protein 100.0 1.3E-39 5.5E-44 231.6 10.7 116 1-117 5-180 (188) 7 1y13_A PTPS, 6-pyruvoyl tetrah 100.0 1.5E-37 6.2E-42 220.6 10.8 109 4-116 28-178 (181) 8 3lx3_A 6-pyruvoyl tetrahydrobi 100.0 2E-36 8.6E-41 214.5 10.5 111 3-117 25-178 (180) 9 1oao_C CODH, carbon monoxide d 40.8 15 0.00064 17.2 2.6 70 36-105 366-465 (729) 10 1k8k_A ARP3, actin-like protei 23.7 39 0.0017 15.0 2.4 50 45-94 79-135 (418) 11 2keb_A DNA polymerase subunit 21.8 37 0.0016 15.1 1.9 67 28-98 8-98 (101) No 1 >2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} Probab=100.00 E-value=0 Score=280.27 Aligned_cols=117 Identities=55% Similarity=0.984 Sum_probs=115.2 Q ss_pred CEEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 97999999971212279998776356767348999999933688754886299999999888775313320335543366 Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELENP 80 (118) Q Consensus 1 m~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~nP 80 (118) |+|+|+|+|+|||||++.+.++||+++|||||+|+|+++|+.+++.|||+||++||+++++++++|||++||++++|+|| T Consensus 21 m~I~k~~~F~AAH~l~~~~~~~kC~~lHGHsy~v~v~v~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~~P 100 (138) T 2oba_A 21 MELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENP 100 (138) T ss_dssp EEEEEEEEEEEEECCSSSCTTCGGGSSEEEEEEEEEEEEECCCTTTSSSSCHHHHHHHHHHHHHHHTTSBGGGSTTCSSC T ss_pred EEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 99999999981649689999997478728938999999950479888787199999999986765676233567354577 Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEC Q ss_conf 5568999999999851142127999985995599750 Q gi|254781032|r 81 TAENIAIWIWKRLSTSLSILSSVRVYETPMSWVEYQG 117 (118) Q Consensus 81 T~Enia~~i~~~l~~~l~~l~~V~v~Et~~~~a~Y~G 117 (118) |+||||+|||+++++++|+|.+|+|||||++||+|+| T Consensus 101 T~Enia~~i~~~l~~~l~~l~~V~v~Et~~~~a~Y~g 137 (138) T 2oba_A 101 TSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRG 137 (138) T ss_dssp CHHHHHHHHHHHHGGGCTTEEEEEEESSTTEEEEECC T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEC T ss_conf 9899999999998873177059999978998899958 No 2 >2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, pterine synthesis; 1.80A {Caenorhabditis elegans} SCOP: d.96.1.2 Probab=100.00 E-value=3.8e-44 Score=255.82 Aligned_cols=116 Identities=34% Similarity=0.622 Sum_probs=109.4 Q ss_pred EEEEEEEEECCEECCCCCCC--------CCCCCC--CCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC Q ss_conf 79999999712122799987--------763567--67348999999933688754886299999999888775313320 Q gi|254781032|r 2 KITQAFTFEAAHRLPRVPKT--------HKCHRM--HGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCL 71 (118) Q Consensus 2 ~itk~~~F~aaH~l~~~~~~--------~kc~~l--HGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~L 71 (118) .|||+++|+|||||.+++++ |||+++ |||||+|+|+++|+.+++.|||+||++||+++++++++|||++| T Consensus 8 ~itk~~~F~AAHrl~~~~~~~~~n~~~~GkC~~~~~HGH~y~vev~v~g~~~~~~G~viDf~~lk~~~~~ii~~lDH~~L 87 (140) T 2g64_A 8 TMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVYDLAKLKKEMSLVLDTVDHRNL 87 (140) T ss_dssp EEEEEEEEEEEECCCCTTSCHHHHHHHHGGGGCTTCEEEEEEEEEEEEEECCTTTCCSSCHHHHHHHHHHHHHTTTTEEH T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999762145888766121764676578989969708999999953378778596399999999999987434544 Q ss_pred C-CCCCCC--CCCHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCEEEEEC Q ss_conf 3-355433--665568999999999851142---127999985995599750 Q gi|254781032|r 72 N-EIEELE--NPTAENIAIWIWKRLSTSLSI---LSSVRVYETPMSWVEYQG 117 (118) Q Consensus 72 n-d~~~~~--nPT~Enia~~i~~~l~~~l~~---l~~V~v~Et~~~~a~Y~G 117 (118) | ++++|+ |||+||||+|||+++++.++. |.+|+|+|||++||+|+| T Consensus 88 n~~~~~f~~~~PTaEnlA~~i~~~l~~~l~~~~~L~~V~v~Et~~~~a~Y~G 139 (140) T 2g64_A 88 DKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVTIEETPKNIFTYKG 139 (140) T ss_dssp HHHCGGGGTSCCCHHHHHHHHHHHHHHHCSSGGGEEEEEEEEETTEEEEECC T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEC T ss_conf 1436556146834899999999999975688855899999977998899969 No 3 >1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, pterine synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A Probab=100.00 E-value=3.6e-44 Score=255.90 Aligned_cols=117 Identities=34% Similarity=0.710 Sum_probs=109.0 Q ss_pred CEEEEEEEEECCEECCCCCCC--------CCCCCC--CCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHH-HHHHHHHHH Q ss_conf 979999999712122799987--------763567--673489999999336887548862999999998-887753133 Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPKT--------HKCHRM--HGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS-PLLEKLDHH 69 (118) Q Consensus 1 m~itk~~~F~aaH~l~~~~~~--------~kc~~l--HGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~-~i~~~lDH~ 69 (118) ++|||+++|+|||||+++.++ |||+++ |||||+|+|++.|+.+++.|||+||++||++++ +|+++|||+ T Consensus 7 ~~itk~~~F~AaHrl~~~~~s~~~n~~~~GkC~~~~~HGHty~veV~v~g~~~~~~GmviDf~~lk~~~~~~I~~~lDH~ 86 (140) T 1b66_A 7 ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVMNLTDLKEYMEEAIMKPLDHK 86 (140) T ss_dssp EEEEEEEEEEEEECCCCTTSCHHHHHHHHGGGGCTTCEEEEEEEEEEEEEECCTTTCCSSCHHHHHHHHHHHTHHHHTTE T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH T ss_conf 99999999972436489887700066456667898898996799999996407878818789999999999887687640 Q ss_pred HCC-CCCCCC--CCCHHHHHHHHHHHHHHHCC--CCEEEEEEECCCCEEEEEC Q ss_conf 203-355433--66556899999999985114--2127999985995599750 Q gi|254781032|r 70 CLN-EIEELE--NPTAENIAIWIWKRLSTSLS--ILSSVRVYETPMSWVEYQG 117 (118) Q Consensus 70 ~Ln-d~~~~~--nPT~Enia~~i~~~l~~~l~--~l~~V~v~Et~~~~a~Y~G 117 (118) +|| ++|+|. |||+||||+|||++|++.+| .|.+|+|||||++||+|+| T Consensus 87 ~Ln~~~p~~~~~~PTaE~lA~~i~~~l~~~l~~~~l~~V~v~Et~~~~a~Y~g 139 (140) T 1b66_A 87 NLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVKVYETDNNIVVYKG 139 (140) T ss_dssp EHHHHCGGGTSSCCCHHHHHHHHHHHHHHHSCTTCEEEEEEEEETTEEEEECC T ss_pred HCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEC T ss_conf 01243666605685089999999999985488363679999968998899938 No 4 >3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A {Streptomyces coelicolor} Probab=100.00 E-value=2.1e-43 Score=251.89 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=108.3 Q ss_pred CEEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCC-- Q ss_conf 979999999712122799987763567673489999999336887548862999999998887753133203355433-- Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELE-- 78 (118) Q Consensus 1 m~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~-- 78 (118) ++|++++.|+|||+|++ +..|||+++|||||+|+|+++|+.+++.|||+||++||+++++++++|||++||++++|+ T Consensus 22 ~~i~~~~~f~aAH~L~~-~~~GkC~~lHGH~y~Vev~v~g~~l~~~G~ViDF~~lk~~~~~i~~~lDh~~Lnd~~~f~~~ 100 (152) T 3d7j_A 22 FSITVRDHIMIAHSFRG-DVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGV 100 (152) T ss_dssp EEEEEEEEEEEEECCCS-GGGGGGGSSEEEEEEEEEEEEESSCCTTSSSSCHHHHHHHHHHHHHTTTTEEGGGCGGGTTS T ss_pred EEEEEEEEEEEEEECCC-CCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHCCC T ss_conf 99999899994777699-99887678657638999999973148788196499999999988877515531544545036 Q ss_pred CCCHHHHHHHHHHHHHHHCCC-----------CEEEEEEECCCCEEEEEC Q ss_conf 665568999999999851142-----------127999985995599750 Q gi|254781032|r 79 NPTAENIAIWIWKRLSTSLSI-----------LSSVRVYETPMSWVEYQG 117 (118) Q Consensus 79 nPT~Enia~~i~~~l~~~l~~-----------l~~V~v~Et~~~~a~Y~G 117 (118) |||+||||+|||++|++.+++ +.+|+|||||++||+|+| T Consensus 101 nPTaE~lA~~i~~~l~~~L~~~~~~~~~~~v~~~kV~v~Etp~~~A~Ye~ 150 (152) T 3d7j_A 101 NTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYER 150 (152) T ss_dssp CCCHHHHHHHHHHHHHHHHHTTTTCGGGGGCCEEEEEEECSSSEEEEEEE T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEC T ss_conf 86178999999999999876411333567639999999917993999817 No 5 >2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS), X-RAY diffraction, structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} PDB: 2dtt_A* Probab=100.00 E-value=6.7e-41 Score=238.47 Aligned_cols=109 Identities=35% Similarity=0.618 Sum_probs=100.9 Q ss_pred CEEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 97999999971212279998776356767348999999933688754886299999999888775313320335543366 Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELENP 80 (118) Q Consensus 1 m~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~nP 80 (118) ++|+|+++|+|||+|+. .+||+++|||||+|+|+++|+.+ +|||+||++||+++++|+++|||++||++. +|| T Consensus 3 ~~i~~~~~F~aAH~l~~---~~~c~~lHGH~y~v~v~v~g~~~--~G~viDf~~lk~~~~~i~~~lDH~~Ln~~~--~~P 75 (115) T 2dj6_A 3 SRIIVRTSFDAAHAVKV---GDHWEDVHGHTFFLEVAIEGEIK--NGYVMDFLELRKIVEEITKELDHRNLNNIF--ENP 75 (115) T ss_dssp EEEEEEEEEEEBCC-------------CCEEEEEEEEEECCCB--TTBSSCHHHHHHHHHHHHTTTTTSBHHHHC--SSC T ss_pred EEEEEEEEEEEECCCCC---CCCCCCCCCCCEEEEEEEEEECC--CCEEEEHHHHHHHHHHHHHHCCCHHHCCCC--CCC T ss_conf 89999999993031589---99867872995799999998257--775888999999999998754843324378--899 Q ss_pred CHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCEEEEE Q ss_conf 5568999999999851142---12799998599559975 Q gi|254781032|r 81 TAENIAIWIWKRLSTSLSI---LSSVRVYETPMSWVEYQ 116 (118) Q Consensus 81 T~Enia~~i~~~l~~~l~~---l~~V~v~Et~~~~a~Y~ 116 (118) |+||||+|||++|++++|. |.+|+|||||++||+|+ T Consensus 76 T~Enla~~i~~~l~~~l~~~~~l~~V~v~Et~~~~aeye 114 (115) T 2dj6_A 76 TTENIALWIGERIRDKLPPYVKLKRVVLWEGKDNGVELE 114 (115) T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEEEEEESSSEEEEEE T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEE T ss_conf 868999999999997488884799999997999489996 No 6 >3jyg_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Wolinella succinogenes} Probab=100.00 E-value=1.3e-39 Score=231.56 Aligned_cols=116 Identities=29% Similarity=0.444 Sum_probs=103.0 Q ss_pred CEEEEEEEEECCEECCCCCC--------CCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC Q ss_conf 97999999971212279998--------7763567673489999999336887548862999999998887753133203 Q gi|254781032|r 1 MKITQAFTFEAAHRLPRVPK--------THKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLN 72 (118) Q Consensus 1 m~itk~~~F~aaH~l~~~~~--------~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Ln 72 (118) ++|+|+++|+|||||++..+ .|||+++|||||.|+|+++|+.++ .|||+||+++|+++++|++.|||++|+ T Consensus 5 ~~I~k~~~F~aaHrl~~~~~~~~~~~~~~gkC~~lHGH~y~v~V~l~g~~~d-~gmViDFg~lK~~~~~i~~~lDH~~L~ 83 (188) T 3jyg_A 5 YQIAKEFDFCYGHRVWSQELNPDFSLDPCLSCRHLHGHQGKVIVHLESRELQ-RGMVTDFAHLNWFKRFIDEVLDHRFII 83 (188) T ss_dssp EEEEEEEEEEEEECCTTCCCCHHHHSCCCCGGGSSEEEEEEEEEEEEESSCB-TTBSSCGGGGHHHHHHHHHHTTTEEEE T ss_pred EEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCEEEHHHHHHHHHHHHHHHCCCEEE T ss_conf 9999999997711847876653224678887489618977999999976588-770889999999999999874710360 Q ss_pred CCCC------------------------------------------------CCCCCHHHHHHHHHHHHHHHCC----CC Q ss_conf 3554------------------------------------------------3366556899999999985114----21 Q gi|254781032|r 73 EIEE------------------------------------------------LENPTAENIAIWIWKRLSTSLS----IL 100 (118) Q Consensus 73 d~~~------------------------------------------------~~nPT~Enia~~i~~~l~~~l~----~l 100 (118) +..+ ..+||+|+||+||+++|++.++ .+ T Consensus 84 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pTaE~lA~~i~~~l~~~l~~~~v~~ 163 (188) T 3jyg_A 84 DIDDPLFPTLLPHFADKSALVWMEEGYARVDFERIKGESSPILELYESFVVVRFVPTSESIASWLLELLRSRIQPLGVKV 163 (188) T ss_dssp ETTCTTHHHHSGGGTTSCSEEECTTSEEEECGGGGTTCCHHHHHHHHHEEEESSCCCHHHHHHHHHHHHHHHCGGGTCEE T ss_pred CCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 56871566565421344200001234333210112221222113455147614896789999999999986436687299 Q ss_pred EEEEEEECCCCEEEEEC Q ss_conf 27999985995599750 Q gi|254781032|r 101 SSVRVYETPMSWVEYQG 117 (118) Q Consensus 101 ~~V~v~Et~~~~a~Y~G 117 (118) .+|+|||||++||+|+| T Consensus 164 ~~V~v~Etp~~~A~y~~ 180 (188) T 3jyg_A 164 SSVEFLETPKSRARVYN 180 (188) T ss_dssp EEEEEEEETTEEEEEEE T ss_pred EEEEEEECCCCEEEEEE T ss_conf 99999965994899982 No 7 >1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of pathogenic protozoa consortium, SGPP, structural genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum} SCOP: d.96.1.2 Probab=100.00 E-value=1.5e-37 Score=220.57 Aligned_cols=109 Identities=27% Similarity=0.465 Sum_probs=95.3 Q ss_pred EEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCC-------- Q ss_conf 999999712122799987763567673489999999336887548862999999998887753133203355-------- Q gi|254781032|r 4 TQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIE-------- 75 (118) Q Consensus 4 tk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~-------- 75 (118) +..|+|+|||+|+ ..|||+++|||||+|+|++.|+. ++.|||+||+++|+++++++++|||++|++.. T Consensus 28 ~~~f~F~aaH~l~---~~gkC~~lHGH~y~v~V~l~g~l-d~~GmViDF~~lK~~~k~i~d~lDH~~L~~~~dp~l~~~~ 103 (181) T 1y13_A 28 SPSFSFNCAHFIA---YNGFRETLHGHNYNVSLKVRGYV-RDDGYVIDFSILKEKVKKVCNKLDHHFILPIYSDVLKFEN 103 (181) T ss_dssp EEEEEEEEEECCE---ETTEECCCEEEEEEEEEEEEEEC-CTTSCSSCHHHHHHHHHHHHHHHSSSEEEETTCSSEEEEE T ss_pred CCEEEEECCCCCC---CCCCCCCCCCCCEEEEEEEEEEC-CCCCEEEEHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHH T ss_conf 7536893764589---89983897189679999999984-8884688899999999999997871410666782033232 Q ss_pred -------------------------CCCCCCHHHHHHHHHHHHHHHCCC---------CEEEEEEECCCCEEEEE Q ss_conf -------------------------433665568999999999851142---------12799998599559975 Q gi|254781032|r 76 -------------------------ELENPTAENIAIWIWKRLSTSLSI---------LSSVRVYETPMSWVEYQ 116 (118) Q Consensus 76 -------------------------~~~nPT~Enia~~i~~~l~~~l~~---------l~~V~v~Et~~~~a~Y~ 116 (118) +..|||+||||+|||++|++.++. +.+|+|||||++||+|+ T Consensus 104 ~~~~~~~~~~~~~~~~~p~~dv~~lp~~npTaE~lA~~i~~~l~~~l~~~~~~~~~i~~v~V~v~Etp~~~A~Y~ 178 (181) T 1y13_A 104 VKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYILNQLIEEMDVSLLKSRHIHYIEISVSESPTQKAIVH 178 (181) T ss_dssp ETTEEEEEETTSCEEEEEGGGEEEESCSSCCHHHHHHHHHHHHHHHHCHHHHHHTTCCEEEEEEEEETTEEEEEE T ss_pred CCCCHHEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCEEEEE T ss_conf 023110000245211356451778357887679999999999987635122556766999999980699899999 No 8 >3lx3_A 6-pyruvoyl tetrahydrobiopterin synthase; PTS, PTP synthase, PTPS, metal-binding, tetrahydrobiopterin biosynthesis, folate biosynthesis; HET: XTN; 1.55A {Plasmodium vivax} PDB: 2a0s_A* 3m0n_A* 3lze_A* Probab=100.00 E-value=2e-36 Score=214.49 Aligned_cols=111 Identities=24% Similarity=0.466 Sum_probs=94.5 Q ss_pred EEEE-EEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCC-------- Q ss_conf 9999-9997121227999877635676734899999993368875488629999999988877531332033-------- Q gi|254781032|r 3 ITQA-FTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNE-------- 73 (118) Q Consensus 3 itk~-~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd-------- 73 (118) |-++ |+|+|||+++ ..|||+++|||||+|+|++.|+. ++.|||+||+++|++++++++.|||++|.. T Consensus 25 ~~~~~f~F~aaH~l~---~~gkC~~lHGH~y~v~v~l~g~l-d~~GmViDF~~lK~~ik~i~d~lDH~~Ll~~~dp~l~~ 100 (180) T 3lx3_A 25 VESPLFSFNCAHFIA---FKGFRETLHGHNYNVSLRLRGNI-QGDGYVIDFSILKEKVRKVCKQLDHHFILPMYSDVLNI 100 (180) T ss_dssp EEEEEEEEEEEECCE---ETTEECCCEEEEEEEEEEEEEEC-CTTSCSSCHHHHHHHHHHHHHHHSSSEEEETTCSSEEE T ss_pred EECCEEEEECCCCCC---CCCCCCCCCCCCEEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCHHHH T ss_conf 963278895675278---89975787189779999999862-87760037999999999999867841016668820322 Q ss_pred -----------------------C--CCCCCCCHHHHHHHHHHHHHHHCCC---------CEEEEEEECCCCEEEEEC Q ss_conf -----------------------5--5433665568999999999851142---------127999985995599750 Q gi|254781032|r 74 -----------------------I--EELENPTAENIAIWIWKRLSTSLSI---------LSSVRVYETPMSWVEYQG 117 (118) Q Consensus 74 -----------------------~--~~~~nPT~Enia~~i~~~l~~~l~~---------l~~V~v~Et~~~~a~Y~G 117 (118) + .+..|||+|+||+|||++|.+.++. +.+|+|+|||++||+|+. T Consensus 101 ~~~~~~~~~~~~~~~~~~~p~~dv~~lp~~npTaE~lA~~i~~~L~~~l~~~~~~~~~v~~v~V~v~Etp~~~A~Y~~ 178 (180) T 3lx3_A 101 QEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVHR 178 (180) T ss_dssp EEETTEEEEEETTCCEEEEEGGGEEEESCSSCCHHHHHHHHHHHHHHHHCHHHHHHTTCCEEEEEEEEETTEEEEEEE T ss_pred HHCCCCHHEECCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEEE T ss_conf 311330110004660331453307881577778999999999999986341125656369999999808998899986 No 9 >1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A Probab=40.84 E-value=15 Score=17.23 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=46.6 Q ss_pred EEEEECCCCC--------CEEEEEHHH--HHHHHHHHHHHHHHHHCCCCCCCC-------------------CCCHHHHH Q ss_conf 9999336887--------548862999--999998887753133203355433-------------------66556899 Q gi|254781032|r 36 LVMEGDVDPK--------TGFVDDFFN--IEQYFSPLLEKLDHHCLNEIEELE-------------------NPTAENIA 86 (118) Q Consensus 36 v~~~g~~~~~--------~G~viDf~~--lk~~~~~i~~~lDH~~Lnd~~~~~-------------------nPT~Enia 86 (118) |++-|+..++ .|++++... ++..+++++++--|.++|-+.++- .=+.|+|. T Consensus 366 i~viGPdi~dmeeG~~~Plgi~v~VaG~~mq~D~E~VlERr~H~~~NyieG~mH~~QRd~~WiRISK~A~~KGf~l~hiG 445 (729) T 1oao_C 366 IEVIGPDIDQIPEGSKLPLGILVDIYGRKMQADFEGVLERRIHDFINYGEGLWHTGQRNINWLRVSKDAVAKGFRFKNYG 445 (729) T ss_dssp EEEESCCGGGSCTTEECCEEEEEEEECTTCCGGGHHHHHHHHHHHHHTBTTEEEEEETTEEEEEEEHHHHHHTCCTHHHH T ss_pred EEEECCCHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEECHHHHHCCCCHHHHH T ss_conf 89978874534657767549999951800162378999999988987505169833675389996278986698789999 Q ss_pred HHHHHHHHHHCCC-CEEEEE Q ss_conf 9999999851142-127999 Q gi|254781032|r 87 IWIWKRLSTSLSI-LSSVRV 105 (118) Q Consensus 87 ~~i~~~l~~~l~~-l~~V~v 105 (118) +-++.+++..+|. +.+++| T Consensus 446 ~vl~~~~k~efp~iidk~qV 465 (729) T 1oao_C 446 EILVAKMKEEFPAIVDRVQV 465 (729) T ss_dssp HHHHHHHHHHSBTTBSEEEE T ss_pred HHHHHHHHHHHHHHHHEEEE T ss_conf 99999998776646447899 No 10 >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* Probab=23.66 E-value=39 Score=15.01 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=30.9 Q ss_pred CCEEEEEHHHHHHHHHHHHHH-H-----HHHHCCCCCCCCC-CCHHHHHHHHHHHHH Q ss_conf 754886299999999888775-3-----1332033554336-655689999999998 Q gi|254781032|r 45 KTGFVDDFFNIEQYFSPLLEK-L-----DHHCLNEIEELEN-PTAENIAIWIWKRLS 94 (118) Q Consensus 45 ~~G~viDf~~lk~~~~~i~~~-l-----DH~~Lnd~~~~~n-PT~Enia~~i~~~l~ 94 (118) +.|++.|+..++++++.++.. + ||..|-..+.+.. ..-|.++..+||.+. T Consensus 79 ~~G~i~d~d~~e~~~~~~~~~~l~~~~~~~~vll~e~~~~~~~~r~~~~e~lFE~~~ 135 (418) T 1k8k_A 79 RHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFN 135 (418) T ss_dssp ETTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSC T ss_pred CCCEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC T ss_conf 077067899999999986543026488777379967899989999999999756378 No 11 >2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens} Probab=21.84 E-value=37 Score=15.12 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=38.4 Q ss_pred CCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCC------------------------CCCCCHH Q ss_conf 6734899999993368875488629999999988877531332033554------------------------3366556 Q gi|254781032|r 28 HGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEE------------------------LENPTAE 83 (118) Q Consensus 28 HGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~------------------------~~nPT~E 83 (118) |-|.-.++|-+.||- .|.+....|+.-++..-=..+...|+.+.+ -.+||.| T Consensus 8 ~~~~~~~~~~~~~~~----~maVs~e~L~eEf~~FGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFs~S~~g~~~T~e 83 (101) T 2keb_A 8 HHHGSSLEVLFQGPG----SMSASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSE 83 (101) T ss_dssp --------------------CCCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHH T ss_pred CCCCCCHHHEEECCC----CEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 456740131005797----1355399999999982998888999999999998399889999999999853799998889 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 899999999985114 Q gi|254781032|r 84 NIAIWIWKRLSTSLS 98 (118) Q Consensus 84 nia~~i~~~l~~~l~ 98 (118) |+..+=.+.++++.. T Consensus 84 nL~~FE~E~l~kr~s 98 (101) T 2keb_A 84 ILNSFEHEFLSKRLS 98 (101) T ss_dssp HHHHHHHHTHHHHCS T ss_pred HHHHHHHHHHHCCCC T ss_conf 999999999830000 Done!