Query         gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 118
No_of_seqs    107 out of 1297
Neff          6.6 
Searched_HMMs 23785
Date          Tue May 31 23:58:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781032.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2oba_A Probable 6-pyruvoyl tet 100.0       0       0  280.3  12.3  117    1-117    21-137 (138)
  2 2g64_A Putative 6-pyruvoyl tet 100.0 3.8E-44       0  255.8  11.7  116    2-117     8-139 (140)
  3 1b66_A 6-pyruvoyl tetrahydropt 100.0 3.6E-44       0  255.9  11.5  117    1-117     7-139 (140)
  4 3d7j_A Uncharacterized protein 100.0 2.1E-43       0  251.9  11.0  116    1-117    22-150 (152)
  5 2dj6_A Hypothetical protein PH 100.0 6.7E-41 2.8E-45  238.5  10.5  109    1-116     3-114 (115)
  6 3jyg_A Uncharacterized protein 100.0 1.3E-39 5.5E-44  231.6  10.7  116    1-117     5-180 (188)
  7 1y13_A PTPS, 6-pyruvoyl tetrah 100.0 1.5E-37 6.2E-42  220.6  10.8  109    4-116    28-178 (181)
  8 3lx3_A 6-pyruvoyl tetrahydrobi 100.0   2E-36 8.6E-41  214.5  10.5  111    3-117    25-178 (180)
  9 1oao_C CODH, carbon monoxide d  40.8      15 0.00064   17.2   2.6   70   36-105   366-465 (729)
 10 1k8k_A ARP3, actin-like protei  23.7      39  0.0017   15.0   2.4   50   45-94     79-135 (418)
 11 2keb_A DNA polymerase subunit   21.8      37  0.0016   15.1   1.9   67   28-98      8-98  (101)

No 1  
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa}
Probab=100.00  E-value=0  Score=280.27  Aligned_cols=117  Identities=55%  Similarity=0.984  Sum_probs=115.2

Q ss_pred             CEEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             97999999971212279998776356767348999999933688754886299999999888775313320335543366
Q gi|254781032|r    1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELENP   80 (118)
Q Consensus         1 m~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~nP   80 (118)
                      |+|+|+|+|+|||||++.+.++||+++|||||+|+|+++|+.+++.|||+||++||+++++++++|||++||++++|+||
T Consensus        21 m~I~k~~~F~AAH~l~~~~~~~kC~~lHGHsy~v~v~v~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~~P  100 (138)
T 2oba_A           21 MELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENP  100 (138)
T ss_dssp             EEEEEEEEEEEEECCSSSCTTCGGGSSEEEEEEEEEEEEECCCTTTSSSSCHHHHHHHHHHHHHHHTTSBGGGSTTCSSC
T ss_pred             EEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             99999999981649689999997478728938999999950479888787199999999986765676233567354577


Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEC
Q ss_conf             5568999999999851142127999985995599750
Q gi|254781032|r   81 TAENIAIWIWKRLSTSLSILSSVRVYETPMSWVEYQG  117 (118)
Q Consensus        81 T~Enia~~i~~~l~~~l~~l~~V~v~Et~~~~a~Y~G  117 (118)
                      |+||||+|||+++++++|+|.+|+|||||++||+|+|
T Consensus       101 T~Enia~~i~~~l~~~l~~l~~V~v~Et~~~~a~Y~g  137 (138)
T 2oba_A          101 TSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRG  137 (138)
T ss_dssp             CHHHHHHHHHHHHGGGCTTEEEEEEESSTTEEEEECC
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEC
T ss_conf             9899999999998873177059999978998899958


No 2  
>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, pterine synthesis; 1.80A {Caenorhabditis elegans} SCOP: d.96.1.2
Probab=100.00  E-value=3.8e-44  Score=255.82  Aligned_cols=116  Identities=34%  Similarity=0.622  Sum_probs=109.4

Q ss_pred             EEEEEEEEECCEECCCCCCC--------CCCCCC--CCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
Q ss_conf             79999999712122799987--------763567--67348999999933688754886299999999888775313320
Q gi|254781032|r    2 KITQAFTFEAAHRLPRVPKT--------HKCHRM--HGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCL   71 (118)
Q Consensus         2 ~itk~~~F~aaH~l~~~~~~--------~kc~~l--HGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~L   71 (118)
                      .|||+++|+|||||.+++++        |||+++  |||||+|+|+++|+.+++.|||+||++||+++++++++|||++|
T Consensus         8 ~itk~~~F~AAHrl~~~~~~~~~n~~~~GkC~~~~~HGH~y~vev~v~g~~~~~~G~viDf~~lk~~~~~ii~~lDH~~L   87 (140)
T 2g64_A            8 TMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVYDLAKLKKEMSLVLDTVDHRNL   87 (140)
T ss_dssp             EEEEEEEEEEEECCCCTTSCHHHHHHHHGGGGCTTCEEEEEEEEEEEEEECCTTTCCSSCHHHHHHHHHHHHHTTTTEEH
T ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999762145888766121764676578989969708999999953378778596399999999999987434544


Q ss_pred             C-CCCCCC--CCCHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCEEEEEC
Q ss_conf             3-355433--665568999999999851142---127999985995599750
Q gi|254781032|r   72 N-EIEELE--NPTAENIAIWIWKRLSTSLSI---LSSVRVYETPMSWVEYQG  117 (118)
Q Consensus        72 n-d~~~~~--nPT~Enia~~i~~~l~~~l~~---l~~V~v~Et~~~~a~Y~G  117 (118)
                      | ++++|+  |||+||||+|||+++++.++.   |.+|+|+|||++||+|+|
T Consensus        88 n~~~~~f~~~~PTaEnlA~~i~~~l~~~l~~~~~L~~V~v~Et~~~~a~Y~G  139 (140)
T 2g64_A           88 DKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVTIEETPKNIFTYKG  139 (140)
T ss_dssp             HHHCGGGGTSCCCHHHHHHHHHHHHHHHCSSGGGEEEEEEEEETTEEEEECC
T ss_pred             CCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEC
T ss_conf             1436556146834899999999999975688855899999977998899969


No 3  
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, pterine synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=100.00  E-value=3.6e-44  Score=255.90  Aligned_cols=117  Identities=34%  Similarity=0.710  Sum_probs=109.0

Q ss_pred             CEEEEEEEEECCEECCCCCCC--------CCCCCC--CCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHH-HHHHHHHHH
Q ss_conf             979999999712122799987--------763567--673489999999336887548862999999998-887753133
Q gi|254781032|r    1 MKITQAFTFEAAHRLPRVPKT--------HKCHRM--HGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS-PLLEKLDHH   69 (118)
Q Consensus         1 m~itk~~~F~aaH~l~~~~~~--------~kc~~l--HGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~-~i~~~lDH~   69 (118)
                      ++|||+++|+|||||+++.++        |||+++  |||||+|+|++.|+.+++.|||+||++||++++ +|+++|||+
T Consensus         7 ~~itk~~~F~AaHrl~~~~~s~~~n~~~~GkC~~~~~HGHty~veV~v~g~~~~~~GmviDf~~lk~~~~~~I~~~lDH~   86 (140)
T 1b66_A            7 ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVMNLTDLKEYMEEAIMKPLDHK   86 (140)
T ss_dssp             EEEEEEEEEEEEECCCCTTSCHHHHHHHHGGGGCTTCEEEEEEEEEEEEEECCTTTCCSSCHHHHHHHHHHHTHHHHTTE
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999972436489887700066456667898898996799999996407878818789999999999887687640


Q ss_pred             HCC-CCCCCC--CCCHHHHHHHHHHHHHHHCC--CCEEEEEEECCCCEEEEEC
Q ss_conf             203-355433--66556899999999985114--2127999985995599750
Q gi|254781032|r   70 CLN-EIEELE--NPTAENIAIWIWKRLSTSLS--ILSSVRVYETPMSWVEYQG  117 (118)
Q Consensus        70 ~Ln-d~~~~~--nPT~Enia~~i~~~l~~~l~--~l~~V~v~Et~~~~a~Y~G  117 (118)
                      +|| ++|+|.  |||+||||+|||++|++.+|  .|.+|+|||||++||+|+|
T Consensus        87 ~Ln~~~p~~~~~~PTaE~lA~~i~~~l~~~l~~~~l~~V~v~Et~~~~a~Y~g  139 (140)
T 1b66_A           87 NLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVKVYETDNNIVVYKG  139 (140)
T ss_dssp             EHHHHCGGGTSSCCCHHHHHHHHHHHHHHHSCTTCEEEEEEEEETTEEEEECC
T ss_pred             HCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEC
T ss_conf             01243666605685089999999999985488363679999968998899938


No 4  
>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A {Streptomyces coelicolor}
Probab=100.00  E-value=2.1e-43  Score=251.89  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=108.3

Q ss_pred             CEEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCC--
Q ss_conf             979999999712122799987763567673489999999336887548862999999998887753133203355433--
Q gi|254781032|r    1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELE--   78 (118)
Q Consensus         1 m~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~--   78 (118)
                      ++|++++.|+|||+|++ +..|||+++|||||+|+|+++|+.+++.|||+||++||+++++++++|||++||++++|+  
T Consensus        22 ~~i~~~~~f~aAH~L~~-~~~GkC~~lHGH~y~Vev~v~g~~l~~~G~ViDF~~lk~~~~~i~~~lDh~~Lnd~~~f~~~  100 (152)
T 3d7j_A           22 FSITVRDHIMIAHSFRG-DVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGAVVGALNYRNLDNEPDFAGV  100 (152)
T ss_dssp             EEEEEEEEEEEEECCCS-GGGGGGGSSEEEEEEEEEEEEESSCCTTSSSSCHHHHHHHHHHHHHTTTTEEGGGCGGGTTS
T ss_pred             EEEEEEEEEEEEEECCC-CCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf             99999899994777699-99887678657638999999973148788196499999999988877515531544545036


Q ss_pred             CCCHHHHHHHHHHHHHHHCCC-----------CEEEEEEECCCCEEEEEC
Q ss_conf             665568999999999851142-----------127999985995599750
Q gi|254781032|r   79 NPTAENIAIWIWKRLSTSLSI-----------LSSVRVYETPMSWVEYQG  117 (118)
Q Consensus        79 nPT~Enia~~i~~~l~~~l~~-----------l~~V~v~Et~~~~a~Y~G  117 (118)
                      |||+||||+|||++|++.+++           +.+|+|||||++||+|+|
T Consensus       101 nPTaE~lA~~i~~~l~~~L~~~~~~~~~~~v~~~kV~v~Etp~~~A~Ye~  150 (152)
T 3d7j_A          101 NTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHESHVAWASYER  150 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTTTCGGGGGCCEEEEEEECSSSEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEC
T ss_conf             86178999999999999876411333567639999999917993999817


No 5  
>2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS), X-RAY diffraction, structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} PDB: 2dtt_A*
Probab=100.00  E-value=6.7e-41  Score=238.47  Aligned_cols=109  Identities=35%  Similarity=0.618  Sum_probs=100.9

Q ss_pred             CEEEEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             97999999971212279998776356767348999999933688754886299999999888775313320335543366
Q gi|254781032|r    1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEELENP   80 (118)
Q Consensus         1 m~itk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~~~nP   80 (118)
                      ++|+|+++|+|||+|+.   .+||+++|||||+|+|+++|+.+  +|||+||++||+++++|+++|||++||++.  +||
T Consensus         3 ~~i~~~~~F~aAH~l~~---~~~c~~lHGH~y~v~v~v~g~~~--~G~viDf~~lk~~~~~i~~~lDH~~Ln~~~--~~P   75 (115)
T 2dj6_A            3 SRIIVRTSFDAAHAVKV---GDHWEDVHGHTFFLEVAIEGEIK--NGYVMDFLELRKIVEEITKELDHRNLNNIF--ENP   75 (115)
T ss_dssp             EEEEEEEEEEEBCC-------------CCEEEEEEEEEECCCB--TTBSSCHHHHHHHHHHHHTTTTTSBHHHHC--SSC
T ss_pred             EEEEEEEEEEEECCCCC---CCCCCCCCCCCEEEEEEEEEECC--CCEEEEHHHHHHHHHHHHHHCCCHHHCCCC--CCC
T ss_conf             89999999993031589---99867872995799999998257--775888999999999998754843324378--899


Q ss_pred             CHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCEEEEE
Q ss_conf             5568999999999851142---12799998599559975
Q gi|254781032|r   81 TAENIAIWIWKRLSTSLSI---LSSVRVYETPMSWVEYQ  116 (118)
Q Consensus        81 T~Enia~~i~~~l~~~l~~---l~~V~v~Et~~~~a~Y~  116 (118)
                      |+||||+|||++|++++|.   |.+|+|||||++||+|+
T Consensus        76 T~Enla~~i~~~l~~~l~~~~~l~~V~v~Et~~~~aeye  114 (115)
T 2dj6_A           76 TTENIALWIGERIRDKLPPYVKLKRVVLWEGKDNGVELE  114 (115)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTCEEEEEEEEESSSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEE
T ss_conf             868999999999997488884799999997999489996


No 6  
>3jyg_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Wolinella succinogenes}
Probab=100.00  E-value=1.3e-39  Score=231.56  Aligned_cols=116  Identities=29%  Similarity=0.444  Sum_probs=103.0

Q ss_pred             CEEEEEEEEECCEECCCCCC--------CCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             97999999971212279998--------7763567673489999999336887548862999999998887753133203
Q gi|254781032|r    1 MKITQAFTFEAAHRLPRVPK--------THKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLN   72 (118)
Q Consensus         1 m~itk~~~F~aaH~l~~~~~--------~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Ln   72 (118)
                      ++|+|+++|+|||||++..+        .|||+++|||||.|+|+++|+.++ .|||+||+++|+++++|++.|||++|+
T Consensus         5 ~~I~k~~~F~aaHrl~~~~~~~~~~~~~~gkC~~lHGH~y~v~V~l~g~~~d-~gmViDFg~lK~~~~~i~~~lDH~~L~   83 (188)
T 3jyg_A            5 YQIAKEFDFCYGHRVWSQELNPDFSLDPCLSCRHLHGHQGKVIVHLESRELQ-RGMVTDFAHLNWFKRFIDEVLDHRFII   83 (188)
T ss_dssp             EEEEEEEEEEEEECCTTCCCCHHHHSCCCCGGGSSEEEEEEEEEEEEESSCB-TTBSSCGGGGHHHHHHHHHHTTTEEEE
T ss_pred             EEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCEEEHHHHHHHHHHHHHHHCCCEEE
T ss_conf             9999999997711847876653224678887489618977999999976588-770889999999999999874710360


Q ss_pred             CCCC------------------------------------------------CCCCCHHHHHHHHHHHHHHHCC----CC
Q ss_conf             3554------------------------------------------------3366556899999999985114----21
Q gi|254781032|r   73 EIEE------------------------------------------------LENPTAENIAIWIWKRLSTSLS----IL  100 (118)
Q Consensus        73 d~~~------------------------------------------------~~nPT~Enia~~i~~~l~~~l~----~l  100 (118)
                      +..+                                                ..+||+|+||+||+++|++.++    .+
T Consensus        84 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pTaE~lA~~i~~~l~~~l~~~~v~~  163 (188)
T 3jyg_A           84 DIDDPLFPTLLPHFADKSALVWMEEGYARVDFERIKGESSPILELYESFVVVRFVPTSESIASWLLELLRSRIQPLGVKV  163 (188)
T ss_dssp             ETTCTTHHHHSGGGTTSCSEEECTTSEEEECGGGGTTCCHHHHHHHHHEEEESSCCCHHHHHHHHHHHHHHHCGGGTCEE
T ss_pred             CCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             56871566565421344200001234333210112221222113455147614896789999999999986436687299


Q ss_pred             EEEEEEECCCCEEEEEC
Q ss_conf             27999985995599750
Q gi|254781032|r  101 SSVRVYETPMSWVEYQG  117 (118)
Q Consensus       101 ~~V~v~Et~~~~a~Y~G  117 (118)
                      .+|+|||||++||+|+|
T Consensus       164 ~~V~v~Etp~~~A~y~~  180 (188)
T 3jyg_A          164 SSVEFLETPKSRARVYN  180 (188)
T ss_dssp             EEEEEEEETTEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEE
T ss_conf             99999965994899982


No 7  
>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of pathogenic protozoa consortium, SGPP, structural genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum} SCOP: d.96.1.2
Probab=100.00  E-value=1.5e-37  Score=220.57  Aligned_cols=109  Identities=27%  Similarity=0.465  Sum_probs=95.3

Q ss_pred             EEEEEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCC--------
Q ss_conf             999999712122799987763567673489999999336887548862999999998887753133203355--------
Q gi|254781032|r    4 TQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIE--------   75 (118)
Q Consensus         4 tk~~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~--------   75 (118)
                      +..|+|+|||+|+   ..|||+++|||||+|+|++.|+. ++.|||+||+++|+++++++++|||++|++..        
T Consensus        28 ~~~f~F~aaH~l~---~~gkC~~lHGH~y~v~V~l~g~l-d~~GmViDF~~lK~~~k~i~d~lDH~~L~~~~dp~l~~~~  103 (181)
T 1y13_A           28 SPSFSFNCAHFIA---YNGFRETLHGHNYNVSLKVRGYV-RDDGYVIDFSILKEKVKKVCNKLDHHFILPIYSDVLKFEN  103 (181)
T ss_dssp             EEEEEEEEEECCE---ETTEECCCEEEEEEEEEEEEEEC-CTTSCSSCHHHHHHHHHHHHHHHSSSEEEETTCSSEEEEE
T ss_pred             CCEEEEECCCCCC---CCCCCCCCCCCCEEEEEEEEEEC-CCCCEEEEHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHH
T ss_conf             7536893764589---89983897189679999999984-8884688899999999999997871410666782033232


Q ss_pred             -------------------------CCCCCCHHHHHHHHHHHHHHHCCC---------CEEEEEEECCCCEEEEE
Q ss_conf             -------------------------433665568999999999851142---------12799998599559975
Q gi|254781032|r   76 -------------------------ELENPTAENIAIWIWKRLSTSLSI---------LSSVRVYETPMSWVEYQ  116 (118)
Q Consensus        76 -------------------------~~~nPT~Enia~~i~~~l~~~l~~---------l~~V~v~Et~~~~a~Y~  116 (118)
                                               +..|||+||||+|||++|++.++.         +.+|+|||||++||+|+
T Consensus       104 ~~~~~~~~~~~~~~~~~p~~dv~~lp~~npTaE~lA~~i~~~l~~~l~~~~~~~~~i~~v~V~v~Etp~~~A~Y~  178 (181)
T 1y13_A          104 VKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYILNQLIEEMDVSLLKSRHIHYIEISVSESPTQKAIVH  178 (181)
T ss_dssp             ETTEEEEEETTSCEEEEEGGGEEEESCSSCCHHHHHHHHHHHHHHHHCHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred             CCCCHHEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCEEEEE
T ss_conf             023110000245211356451778357887679999999999987635122556766999999980699899999


No 8  
>3lx3_A 6-pyruvoyl tetrahydrobiopterin synthase; PTS, PTP synthase, PTPS, metal-binding, tetrahydrobiopterin biosynthesis, folate biosynthesis; HET: XTN; 1.55A {Plasmodium vivax} PDB: 2a0s_A* 3m0n_A* 3lze_A*
Probab=100.00  E-value=2e-36  Score=214.49  Aligned_cols=111  Identities=24%  Similarity=0.466  Sum_probs=94.5

Q ss_pred             EEEE-EEEECCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCC--------
Q ss_conf             9999-9997121227999877635676734899999993368875488629999999988877531332033--------
Q gi|254781032|r    3 ITQA-FTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNE--------   73 (118)
Q Consensus         3 itk~-~~F~aaH~l~~~~~~~kc~~lHGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd--------   73 (118)
                      |-++ |+|+|||+++   ..|||+++|||||+|+|++.|+. ++.|||+||+++|++++++++.|||++|..        
T Consensus        25 ~~~~~f~F~aaH~l~---~~gkC~~lHGH~y~v~v~l~g~l-d~~GmViDF~~lK~~ik~i~d~lDH~~Ll~~~dp~l~~  100 (180)
T 3lx3_A           25 VESPLFSFNCAHFIA---FKGFRETLHGHNYNVSLRLRGNI-QGDGYVIDFSILKEKVRKVCKQLDHHFILPMYSDVLNI  100 (180)
T ss_dssp             EEEEEEEEEEEECCE---ETTEECCCEEEEEEEEEEEEEEC-CTTSCSSCHHHHHHHHHHHHHHHSSSEEEETTCSSEEE
T ss_pred             EECCEEEEECCCCCC---CCCCCCCCCCCCEEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCHHHH
T ss_conf             963278895675278---89975787189779999999862-87760037999999999999867841016668820322


Q ss_pred             -----------------------C--CCCCCCCHHHHHHHHHHHHHHHCCC---------CEEEEEEECCCCEEEEEC
Q ss_conf             -----------------------5--5433665568999999999851142---------127999985995599750
Q gi|254781032|r   74 -----------------------I--EELENPTAENIAIWIWKRLSTSLSI---------LSSVRVYETPMSWVEYQG  117 (118)
Q Consensus        74 -----------------------~--~~~~nPT~Enia~~i~~~l~~~l~~---------l~~V~v~Et~~~~a~Y~G  117 (118)
                                             +  .+..|||+|+||+|||++|.+.++.         +.+|+|+|||++||+|+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~p~~dv~~lp~~npTaE~lA~~i~~~L~~~l~~~~~~~~~v~~v~V~v~Etp~~~A~Y~~  178 (180)
T 3lx3_A          101 QEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVHR  178 (180)
T ss_dssp             EEETTEEEEEETTCCEEEEEGGGEEEESCSSCCHHHHHHHHHHHHHHHHCHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred             HHCCCCHHEECCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEEE
T ss_conf             311330110004660331453307881577778999999999999986341125656369999999808998899986


No 9  
>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A
Probab=40.84  E-value=15  Score=17.23  Aligned_cols=70  Identities=19%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             EEEEECCCCC--------CEEEEEHHH--HHHHHHHHHHHHHHHHCCCCCCCC-------------------CCCHHHHH
Q ss_conf             9999336887--------548862999--999998887753133203355433-------------------66556899
Q gi|254781032|r   36 LVMEGDVDPK--------TGFVDDFFN--IEQYFSPLLEKLDHHCLNEIEELE-------------------NPTAENIA   86 (118)
Q Consensus        36 v~~~g~~~~~--------~G~viDf~~--lk~~~~~i~~~lDH~~Lnd~~~~~-------------------nPT~Enia   86 (118)
                      |++-|+..++        .|++++...  ++..+++++++--|.++|-+.++-                   .=+.|+|.
T Consensus       366 i~viGPdi~dmeeG~~~Plgi~v~VaG~~mq~D~E~VlERr~H~~~NyieG~mH~~QRd~~WiRISK~A~~KGf~l~hiG  445 (729)
T 1oao_C          366 IEVIGPDIDQIPEGSKLPLGILVDIYGRKMQADFEGVLERRIHDFINYGEGLWHTGQRNINWLRVSKDAVAKGFRFKNYG  445 (729)
T ss_dssp             EEEESCCGGGSCTTEECCEEEEEEEECTTCCGGGHHHHHHHHHHHHHTBTTEEEEEETTEEEEEEEHHHHHHTCCTHHHH
T ss_pred             EEEECCCHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEECHHHHHCCCCHHHHH
T ss_conf             89978874534657767549999951800162378999999988987505169833675389996278986698789999


Q ss_pred             HHHHHHHHHHCCC-CEEEEE
Q ss_conf             9999999851142-127999
Q gi|254781032|r   87 IWIWKRLSTSLSI-LSSVRV  105 (118)
Q Consensus        87 ~~i~~~l~~~l~~-l~~V~v  105 (118)
                      +-++.+++..+|. +.+++|
T Consensus       446 ~vl~~~~k~efp~iidk~qV  465 (729)
T 1oao_C          446 EILVAKMKEEFPAIVDRVQV  465 (729)
T ss_dssp             HHHHHHHHHHSBTTBSEEEE
T ss_pred             HHHHHHHHHHHHHHHHEEEE
T ss_conf             99999998776646447899


No 10 
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A*
Probab=23.66  E-value=39  Score=15.01  Aligned_cols=50  Identities=24%  Similarity=0.390  Sum_probs=30.9

Q ss_pred             CCEEEEEHHHHHHHHHHHHHH-H-----HHHHCCCCCCCCC-CCHHHHHHHHHHHHH
Q ss_conf             754886299999999888775-3-----1332033554336-655689999999998
Q gi|254781032|r   45 KTGFVDDFFNIEQYFSPLLEK-L-----DHHCLNEIEELEN-PTAENIAIWIWKRLS   94 (118)
Q Consensus        45 ~~G~viDf~~lk~~~~~i~~~-l-----DH~~Lnd~~~~~n-PT~Enia~~i~~~l~   94 (118)
                      +.|++.|+..++++++.++.. +     ||..|-..+.+.. ..-|.++..+||.+.
T Consensus        79 ~~G~i~d~d~~e~~~~~~~~~~l~~~~~~~~vll~e~~~~~~~~r~~~~e~lFE~~~  135 (418)
T 1k8k_A           79 RHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFN  135 (418)
T ss_dssp             ETTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSC
T ss_pred             CCCEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf             077067899999999986543026488777379967899989999999999756378


No 11 
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.84  E-value=37  Score=15.12  Aligned_cols=67  Identities=16%  Similarity=0.180  Sum_probs=38.4

Q ss_pred             CCCCEEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCC------------------------CCCCCHH
Q ss_conf             6734899999993368875488629999999988877531332033554------------------------3366556
Q gi|254781032|r   28 HGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLEKLDHHCLNEIEE------------------------LENPTAE   83 (118)
Q Consensus        28 HGH~y~v~v~~~g~~~~~~G~viDf~~lk~~~~~i~~~lDH~~Lnd~~~------------------------~~nPT~E   83 (118)
                      |-|.-.++|-+.||-    .|.+....|+.-++..-=..+...|+.+.+                        -.+||.|
T Consensus         8 ~~~~~~~~~~~~~~~----~maVs~e~L~eEf~~FGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFs~S~~g~~~T~e   83 (101)
T 2keb_A            8 HHHGSSLEVLFQGPG----SMSASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSE   83 (101)
T ss_dssp             --------------------CCCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHH
T ss_pred             CCCCCCHHHEEECCC----CEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             456740131005797----1355399999999982998888999999999998399889999999999853799998889


Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             899999999985114
Q gi|254781032|r   84 NIAIWIWKRLSTSLS   98 (118)
Q Consensus        84 nia~~i~~~l~~~l~   98 (118)
                      |+..+=.+.++++..
T Consensus        84 nL~~FE~E~l~kr~s   98 (101)
T 2keb_A           84 ILNSFEHEFLSKRLS   98 (101)
T ss_dssp             HHHHHHHHTHHHHCS
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999830000


Done!