RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62] (118 letters) >2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} (A:) Length = 138 Score = 146 bits (370), Expect = 9e-37 Identities = 63/116 (54%), Positives = 86/116 (74%) Query: 2 KITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSP 61 ++ + FTFE+AHRLP VP+ HKC R+HGHS+RV + +EG+VDP TG++ DF I+ F P Sbjct: 22 ELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKP 81 Query: 62 LLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSILSSVRVYETPMSWVEYQG 117 + E+LDH+ LN+I LENPT+EN+ WIW++L L LS VRV+ET S EY+G Sbjct: 82 IYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRG 137 Score = 24.8 bits (54), Expect = 4.1 Identities = 3/16 (18%), Positives = 6/16 (37%) Query: 102 SVRVYETPMSWVEYQG 117 S + S + +G Sbjct: 3 SSHHHHHHSSGLVPRG 18 >3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A {Streptomyces coelicolor} (A:) Length = 152 Score = 123 bits (311), Expect = 7e-30 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 14/130 (10%) Query: 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60 IT AH R+HG ++ V+ + + V D Q Sbjct: 22 FSITVRDHIXIAHSFRG-DVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELG 80 Query: 61 PLLEKLDHHCLNEIEELE--NPTAENIAIWIWKRLSTSLS-----------ILSSVRVYE 107 ++ L++ L+ + N + E +A I RL+ + +V ++E Sbjct: 81 AVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHE 140 Query: 108 TPMSWVEYQG 117 + ++W Y+ Sbjct: 141 SHVAWASYER 150 >2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS), X-RAY diffraction, structural genomics, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} PDB: 2dtt_A* (A:) Length = 115 Score = 121 bits (305), Expect = 4e-29 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 10/118 (8%) Query: 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60 +I +F+AAH + +HGH++ +E+ +EG++ G+V DF + + Sbjct: 3 SRIIVRTSFDAAHAVKV---GDHWEDVHGHTFFLEVAIEGEIK--NGYVMDFLELRKIVE 57 Query: 61 PLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLS---ILSSVRVYETPMSWVEY 115 + ++LDH LN I ENPT ENIA+WI +R+ L L V ++E + VE Sbjct: 58 EITKELDHRNLNNI--FENPTTENIALWIGERIRDKLPPYVKLKRVVLWEGKDNGVEL 113 >2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, pterine synthesis; 1.80A {Caenorhabditis elegans} (A:) Length = 140 Score = 115 bits (289), Expect = 2e-27 Identities = 39/133 (29%), Positives = 71/133 (53%), Gaps = 16/133 (12%) Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCH--RMHGHSYRVELVMEGDVDPKTGFVD 50 + + + +F AAHRL KC+ HGH+Y ++ + G+VDP +G V Sbjct: 7 VTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVY 66 Query: 51 DFFNIEQYFSPLLEKLDHHCLNEIEEL---ENPTAENIAIWIWKRLSTSLS---ILSSVR 104 D +++ S +L+ +DH L++ E T+EN+AI+++++L + +S +L V Sbjct: 67 DLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVT 126 Query: 105 VYETPMSWVEYQG 117 + ETP + Y+G Sbjct: 127 IEETPKNIFTYKG 139 >1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, pterine synthesis; HET: BIO; 1.90A {Rattus rattus} (A:) Length = 140 Score = 115 bits (288), Expect = 3e-27 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 16/133 (12%) Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCHRM--HGHSYRVELVMEGDVDPKTGFVD 50 ++++ +F A+HRL + KC+ HGH+Y+V + + G++DP TG V Sbjct: 7 ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVM 66 Query: 51 DFFNIEQYF-SPLLEKLDHHCLNEIEEL---ENPTAENIAIWIWKRLSTSLS--ILSSVR 104 + ++++Y +++ LDH L+ T EN+A++IW+ L L L V+ Sbjct: 67 NLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVK 126 Query: 105 VYETPMSWVEYQG 117 VYET + V Y+G Sbjct: 127 VYETDNNIVVYKG 139 >2a0s_A 6-pyruvoyl tetrahydropterin synthase; SGPP, structural genomics, PSI, protein structure initiative, PTPS; HET: BIO; 2.20A {Plasmodium vivax} (A:) Length = 180 Score = 102 bits (256), Expect = 1e-23 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 46/159 (28%) Query: 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60 + + F+F AH + +HGH+Y V L + G++ G+V DF +++ Sbjct: 24 LVESPLFSFNCAHFIAFK---GFRETLHGHNYNVSLRLRGNIQG-DGYVIDFSILKEKVR 79 Query: 61 PLLEKLDHHCLNEIEELE---NPTAENIAIWIWKRLSTSLSI------------------ 99 + ++LDHH + + +N I S Sbjct: 80 KVCKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGL 139 Query: 100 ---------------------LSSVRVYETPMSWVEYQG 117 V V E+P Sbjct: 140 YILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVHR 178 >3jyg_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Wolinella succinogenes} (A:) Length = 188 Score = 101 bits (252), Expect = 4e-23 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 12/122 (9%) Query: 2 KITQAFTFEAAHRLPR--------VPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFF 53 +I + F F HR+ + C +HGH +V + +E + + G V DF Sbjct: 6 QIAKEFDFCYGHRVWSQELNPDFSLDPCLSCRHLHGHQGKVIVHLESR-ELQRGXVTDFA 64 Query: 54 NIEQYFSPLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSILSSVRVYETPMSWV 113 ++ + + E LDH + +I+ +P + + + RV + Sbjct: 65 HLNWFKRFIDEVLDHRFIIDID---DPLFPTLLPHFADKSALVWXEEGYARVDFERIKGE 121 Query: 114 EY 115 Sbjct: 122 SS 123 >1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of pathogenic protozoa consortium, SGPP, structural genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum} (A:) Length = 181 Score = 98.2 bits (244), Expect = 4e-22 Identities = 29/157 (18%), Positives = 44/157 (28%), Gaps = 46/157 (29%) Query: 3 ITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPL 62 + +F+F AH + +HGH+Y V L + G V G+V DF +++ + Sbjct: 27 ESPSFSFNCAHFIAYN---GFRETLHGHNYNVSLKVRGYVRD-DGYVIDFSILKEKVKKV 82 Query: 63 LEKLDHHCLNEIE---ELENPTAENIAIWIWKRLSTSLSI-------------------- 99 KLDHH + I NI I S Sbjct: 83 CNKLDHHFILPIYSDVLKFENVKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYI 142 Query: 100 -------------------LSSVRVYETPMSWVEYQG 117 + V E+P Sbjct: 143 LNQLIEEXDVSLLKSRHIHYIEISVSESPTQKAIVHK 179 >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:111-220,1:304-365) Length = 172 Score = 24.8 bits (54), Expect = 4.2 Identities = 6/20 (30%), Positives = 10/20 (50%) Query: 25 HRMHGHSYRVELVMEGDVDP 44 HR + E V++GD+ Sbjct: 131 HRTGLMRHDPENVLDGDLMD 150 >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:121-231,A:315-365) Length = 162 Score = 24.3 bits (53), Expect = 6.3 Identities = 4/20 (20%), Positives = 9/20 (45%) Query: 25 HRMHGHSYRVELVMEGDVDP 44 R + + V++G +D Sbjct: 133 LRTGVETRNTQAVLDGSLDQ 152 >3i1n_D 50S ribosomal protein L3; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_B 1p86_B 1vs8_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vs6_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D 2qox_D ... (D:1-30,D:102-209) Length = 138 Score = 23.9 bits (52), Expect = 7.6 Identities = 3/17 (17%), Positives = 4/17 (23%) Query: 13 HRLPRVPKTHKCHRMHG 29 HR+ G Sbjct: 57 RTQDATHGNSLSHRVPG 73 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.136 0.430 Gapped Lambda K H 0.267 0.0526 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,025,215 Number of extensions: 43985 Number of successful extensions: 142 Number of sequences better than 10.0: 1 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 28 Length of query: 118 Length of database: 4,956,049 Length adjustment: 70 Effective length of query: 48 Effective length of database: 2,589,699 Effective search space: 124305552 Effective search space used: 124305552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.5 bits)