RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781032|ref|YP_003065445.1| hypothetical protein
CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62]
         (118 letters)



>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase;
           tetrahydrobiopterin biosynthesis, PTP synthase, PTPS,
           lyase; 2.33A {Pseudomonas aeruginosa} (A:)
          Length = 138

 Score =  146 bits (370), Expect = 9e-37
 Identities = 63/116 (54%), Positives = 86/116 (74%)

Query: 2   KITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSP 61
           ++ + FTFE+AHRLP VP+ HKC R+HGHS+RV + +EG+VDP TG++ DF  I+  F P
Sbjct: 22  ELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKP 81

Query: 62  LLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSILSSVRVYETPMSWVEYQG 117
           + E+LDH+ LN+I  LENPT+EN+  WIW++L   L  LS VRV+ET  S  EY+G
Sbjct: 82  IYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRG 137



 Score = 24.8 bits (54), Expect = 4.1
 Identities = 3/16 (18%), Positives = 6/16 (37%)

Query: 102 SVRVYETPMSWVEYQG 117
           S   +    S +  +G
Sbjct: 3   SSHHHHHHSSGLVPRG 18


>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function;
           1.45A {Streptomyces coelicolor} (A:)
          Length = 152

 Score =  123 bits (311), Expect = 7e-30
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 1   MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60
             IT       AH            R+HG ++ V+     +   +   V D     Q   
Sbjct: 22  FSITVRDHIXIAHSFRG-DVFGPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELG 80

Query: 61  PLLEKLDHHCLNEIEELE--NPTAENIAIWIWKRLSTSLS-----------ILSSVRVYE 107
            ++  L++  L+   +    N + E +A  I  RL+  +               +V ++E
Sbjct: 81  AVVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHE 140

Query: 108 TPMSWVEYQG 117
           + ++W  Y+ 
Sbjct: 141 SHVAWASYER 150


>2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin
           synthase (PTPS), X-RAY diffraction, structural genomics,
           NPPSFA; 2.10A {Pyrococcus horikoshii OT3} PDB: 2dtt_A*
           (A:)
          Length = 115

 Score =  121 bits (305), Expect = 4e-29
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 10/118 (8%)

Query: 1   MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60
            +I    +F+AAH +           +HGH++ +E+ +EG++    G+V DF  + +   
Sbjct: 3   SRIIVRTSFDAAHAVKV---GDHWEDVHGHTFFLEVAIEGEIK--NGYVMDFLELRKIVE 57

Query: 61  PLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLS---ILSSVRVYETPMSWVEY 115
            + ++LDH  LN I   ENPT ENIA+WI +R+   L     L  V ++E   + VE 
Sbjct: 58  EITKELDHRNLNNI--FENPTTENIALWIGERIRDKLPPYVKLKRVVLWEGKDNGVEL 113


>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase;
           tetrahydrobiopterin biosynthesis, phosphate elimination,
           pterine synthesis; 1.80A {Caenorhabditis elegans} (A:)
          Length = 140

 Score =  115 bits (289), Expect = 2e-27
 Identities = 39/133 (29%), Positives = 71/133 (53%), Gaps = 16/133 (12%)

Query: 1   MKITQAFTFEAAHRLPR--------VPKTHKCH--RMHGHSYRVELVMEGDVDPKTGFVD 50
           + + +  +F AAHRL               KC+    HGH+Y  ++ + G+VDP +G V 
Sbjct: 7   VTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVY 66

Query: 51  DFFNIEQYFSPLLEKLDHHCLNEIEEL---ENPTAENIAIWIWKRLSTSLS---ILSSVR 104
           D   +++  S +L+ +DH  L++  E       T+EN+AI+++++L + +S   +L  V 
Sbjct: 67  DLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVT 126

Query: 105 VYETPMSWVEYQG 117
           + ETP +   Y+G
Sbjct: 127 IEETPKNIFTYKG 139


>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin
           biosynthesis, phosphate elimination, pterine synthesis;
           HET: BIO; 1.90A {Rattus rattus} (A:)
          Length = 140

 Score =  115 bits (288), Expect = 3e-27
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 16/133 (12%)

Query: 1   MKITQAFTFEAAHRLPR--------VPKTHKCHRM--HGHSYRVELVMEGDVDPKTGFVD 50
            ++++  +F A+HRL          +    KC+    HGH+Y+V + + G++DP TG V 
Sbjct: 7   ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVM 66

Query: 51  DFFNIEQYF-SPLLEKLDHHCLNEIEEL---ENPTAENIAIWIWKRLSTSLS--ILSSVR 104
           +  ++++Y    +++ LDH  L+           T EN+A++IW+ L   L    L  V+
Sbjct: 67  NLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVK 126

Query: 105 VYETPMSWVEYQG 117
           VYET  + V Y+G
Sbjct: 127 VYETDNNIVVYKG 139


>2a0s_A 6-pyruvoyl tetrahydropterin synthase; SGPP, structural
           genomics, PSI, protein structure initiative, PTPS; HET:
           BIO; 2.20A {Plasmodium vivax} (A:)
          Length = 180

 Score =  102 bits (256), Expect = 1e-23
 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 46/159 (28%)

Query: 1   MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60
           +  +  F+F  AH +           +HGH+Y V L + G++    G+V DF  +++   
Sbjct: 24  LVESPLFSFNCAHFIAFK---GFRETLHGHNYNVSLRLRGNIQG-DGYVIDFSILKEKVR 79

Query: 61  PLLEKLDHHCLNEIEELE---NPTAENIAIWIWKRLSTSLSI------------------ 99
            + ++LDHH +  +           +N  I        S                     
Sbjct: 80  KVCKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGL 139

Query: 100 ---------------------LSSVRVYETPMSWVEYQG 117
                                   V V E+P        
Sbjct: 140 YILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVHR 178


>3jyg_A Uncharacterized protein; structural genomics, unknown
           function, PSI-2, protein structure initiative; 1.95A
           {Wolinella succinogenes} (A:)
          Length = 188

 Score =  101 bits (252), Expect = 4e-23
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 12/122 (9%)

Query: 2   KITQAFTFEAAHRLPR--------VPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFF 53
           +I + F F   HR+          +     C  +HGH  +V + +E   + + G V DF 
Sbjct: 6   QIAKEFDFCYGHRVWSQELNPDFSLDPCLSCRHLHGHQGKVIVHLESR-ELQRGXVTDFA 64

Query: 54  NIEQYFSPLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSILSSVRVYETPMSWV 113
           ++  +   + E LDH  + +I+   +P    +      + +         RV    +   
Sbjct: 65  HLNWFKRFIDEVLDHRFIIDID---DPLFPTLLPHFADKSALVWXEEGYARVDFERIKGE 121

Query: 114 EY 115
             
Sbjct: 122 SS 123


>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural
           genomics of pathogenic protozoa consortium, SGPP,
           structural genomics, PSI; HET: BIO; 2.20A {Plasmodium
           falciparum} (A:)
          Length = 181

 Score = 98.2 bits (244), Expect = 4e-22
 Identities = 29/157 (18%), Positives = 44/157 (28%), Gaps = 46/157 (29%)

Query: 3   ITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPL 62
            + +F+F  AH +           +HGH+Y V L + G V    G+V DF  +++    +
Sbjct: 27  ESPSFSFNCAHFIAYN---GFRETLHGHNYNVSLKVRGYVRD-DGYVIDFSILKEKVKKV 82

Query: 63  LEKLDHHCLNEIE---ELENPTAENIAIWIWKRLSTSLSI-------------------- 99
             KLDHH +  I            NI I        S                       
Sbjct: 83  CNKLDHHFILPIYSDVLKFENVKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYI 142

Query: 100 -------------------LSSVRVYETPMSWVEYQG 117
                                 + V E+P        
Sbjct: 143 LNQLIEEXDVSLLKSRHIHYIEISVSESPTQKAIVHK 179


>2ihr_1 Peptide chain release factor 2; mixed alpha-beta,
           translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y*
           3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
           (1:111-220,1:304-365)
          Length = 172

 Score = 24.8 bits (54), Expect = 4.2
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 25  HRMHGHSYRVELVMEGDVDP 44
           HR     +  E V++GD+  
Sbjct: 131 HRTGLMRHDPENVLDGDLMD 150


>1gqe_A Release factor 2, RF2; protein synthesis, ribosome,
           macromolecular mimicry, translation; 1.81A {Escherichia
           coli} (A:121-231,A:315-365)
          Length = 162

 Score = 24.3 bits (53), Expect = 6.3
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 25  HRMHGHSYRVELVMEGDVDP 44
            R    +   + V++G +D 
Sbjct: 133 LRTGVETRNTQAVLDGSLDQ 152


>3i1n_D 50S ribosomal protein L3; ribosome structure, protein-RNA
          complex, acetylation, ribonucleoprotein, ribosomal
          protein, RNA-binding, rRNA- binding, methylation; 3.19A
          {Escherichia coli k-12} PDB: 1p85_B 1p86_B 1vs8_D
          2aw4_D 2awb_D 2gya_B 2gyc_B 1vs6_D 2i2v_D 2j28_D
          2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D*
          2qbk_D* 2qov_D 2qox_D ... (D:1-30,D:102-209)
          Length = 138

 Score = 23.9 bits (52), Expect = 7.6
 Identities = 3/17 (17%), Positives = 4/17 (23%)

Query: 13 HRLPRVPKTHKCHRMHG 29
                      HR+ G
Sbjct: 57 RTQDATHGNSLSHRVPG 73


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,025,215
Number of extensions: 43985
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 28
Length of query: 118
Length of database: 4,956,049
Length adjustment: 70
Effective length of query: 48
Effective length of database: 2,589,699
Effective search space: 124305552
Effective search space used: 124305552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)