RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781032|ref|YP_003065445.1| hypothetical protein
CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62]
(118 letters)
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase;
tetrahydrobiopterin biosynthesis, PTP synthase, PTPS,
lyase; 2.33A {Pseudomonas aeruginosa}
Length = 138
Score = 146 bits (369), Expect = 1e-36
Identities = 64/117 (54%), Positives = 87/117 (74%)
Query: 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60
M++ + FTFE+AHRLP VP+ HKC R+HGHS+RV + +EG+VDP TG++ DF I+ F
Sbjct: 21 MELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFK 80
Query: 61 PLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSILSSVRVYETPMSWVEYQG 117
P+ E+LDH+ LN+I LENPT+EN+ WIW++L L LS VRV+ET S EY+G
Sbjct: 81 PIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRG 137
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin
biosynthesis, phosphate elimination, pterine synthesis;
HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB:
1b6z_A 1gtq_A 3i2b_A
Length = 140
Score = 121 bits (306), Expect = 3e-29
Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 16/133 (12%)
Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCHR--MHGHSYRVELVMEGDVDPKTGFVD 50
++++ +F A+HRL + KC+ HGH+Y+V + + G++DP TG V
Sbjct: 7 ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVM 66
Query: 51 DFFNIEQYF-SPLLEKLDHHCLN-EIEELE--NPTAENIAIWIWKRLSTSLSI--LSSVR 104
+ ++++Y +++ LDH L+ ++ T EN+A++IW+ L L + L V+
Sbjct: 67 NLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVK 126
Query: 105 VYETPMSWVEYQG 117
VYET + V Y+G
Sbjct: 127 VYETDNNIVVYKG 139
>2g64_A Putative 6-pyruvoyl tetrahydrobiopterin synthase;
tetrahydrobiopterin biosynthesis, phosphate elimination,
pterine synthesis; 1.80A {Caenorhabditis elegans} SCOP:
d.96.1.2
Length = 140
Score = 119 bits (300), Expect = 1e-28
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 16/133 (12%)
Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCHRM--HGHSYRVELVMEGDVDPKTGFVD 50
+ + + +F AAHRL KC+ HGH+Y ++ + G+VDP +G V
Sbjct: 7 VTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVY 66
Query: 51 DFFNIEQYFSPLLEKLDHHCLN-EIEELEN--PTAENIAIWIWKRLSTSLS---ILSSVR 104
D +++ S +L+ +DH L+ ++E + T+EN+AI+++++L + +S +L V
Sbjct: 67 DLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVT 126
Query: 105 VYETPMSWVEYQG 117
+ ETP + Y+G
Sbjct: 127 IEETPKNIFTYKG 139
>2dj6_A Hypothetical protein PH0634; 6-pyruvoyl tetrahydrobiopterin
synthase (PTPS), X-RAY diffraction, structural genomics,
NPPSFA; 2.10A {Pyrococcus horikoshii OT3} PDB: 2dtt_A*
Length = 115
Score = 111 bits (278), Expect = 5e-26
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFS 60
+I +F+AAH + +HGH++ +E+ +EG++ G+V DF + +
Sbjct: 3 SRIIVRTSFDAAHAVKV---GDHWEDVHGHTFFLEVAIEGEIK--NGYVMDFLELRKIVE 57
Query: 61 PLLEKLDHHCLNEIEELENPTAENIAIWIWKRLSTSLSI---LSSVRVYETPMSWVEYQ 116
+ ++LDH LN I ENPT ENIA+WI +R+ L L V ++E + VE +
Sbjct: 58 EITKELDHRNLNNI--FENPTTENIALWIGERIRDKLPPYVKLKRVVLWEGKDNGVELE 114
>3d7j_A Uncharacterized protein SCO6650; T-fold, unknown function; 1.45A
{Streptomyces coelicolor}
Length = 152
Score = 103 bits (257), Expect = 1e-23
Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 14/129 (10%)
Query: 2 KITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSP 61
IT AH R+HG ++ V+ + + V D Q
Sbjct: 23 SITVRDHIMIAHSFRGDVF-GPAQRLHGATFLVDATFRREQLDEDNIVVDIGLATQELGA 81
Query: 62 LLEKLDHHCLNEIEELE--NPTAENIAIWIWKRLSTSLS-----------ILSSVRVYET 108
++ L++ L+ + N + E +A I RL+ + +V ++E+
Sbjct: 82 VVGALNYRNLDNEPDFAGVNTSTEFLAKVIADRLAERVHKGALGEGARGLAGLTVTLHES 141
Query: 109 PMSWVEYQG 117
++W Y+
Sbjct: 142 HVAWASYER 150
>1y13_A PTPS, 6-pyruvoyl tetrahydropterin synthase; structural genomics of
pathogenic protozoa consortium, SGPP, structural
genomics, PSI; HET: BIO; 2.20A {Plasmodium falciparum}
SCOP: d.96.1.2
Length = 181
Score = 100 bits (251), Expect = 6e-23
Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 46/154 (29%)
Query: 5 QAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLLE 64
+F+F AH + +HGH+Y V L + G V G+V DF +++ +
Sbjct: 29 PSFSFNCAHFIAY---NGFRETLHGHNYNVSLKVRGYVRD-DGYVIDFSILKEKVKKVCN 84
Query: 65 KLDHHCLNEIE---------------------------------ELENPTAENIAIWIWK 91
KLDHH + I +++ + E I +I
Sbjct: 85 KLDHHFILPIYSDVLKFENVKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYILN 144
Query: 92 RLSTSLSI---------LSSVRVYETPMSWVEYQ 116
+L + + + V E+P
Sbjct: 145 QLIEEMDVSLLKSRHIHYIEISVSESPTQKAIVH 178
>3lx3_A 6-pyruvoyl tetrahydrobiopterin synthase; PTS, PTP synthase, PTPS,
metal-binding, tetrahydrobiopterin biosynthesis, folate
biosynthesis; HET: XTN; 1.55A {Plasmodium vivax} PDB:
2a0s_A* 3m0n_A* 3lze_A*
Length = 180
Score = 99.4 bits (247), Expect = 2e-22
Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 46/155 (29%)
Query: 4 TQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLL 63
+ F+F AH + +HGH+Y V L + G++ G+V DF +++ +
Sbjct: 27 SPLFSFNCAHFIAF---KGFRETLHGHNYNVSLRLRGNIQG-DGYVIDFSILKEKVRKVC 82
Query: 64 EKLDHHCLNEIE---------------------------------ELENPTAENIAIWIW 90
++LDHH + + +++ + E I ++I
Sbjct: 83 KQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYIL 142
Query: 91 KRLSTSLSI---------LSSVRVYETPMSWVEYQ 116
+L + + V V E+P
Sbjct: 143 NQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVH 177
>2a0s_A 6-pyruvoyl tetrahydropterin synthase; SGPP, structural genomics,
PSI, protein structure initiative, PTPS; HET: BIO; 2.20A
{Plasmodium vivax} SCOP: d.96.1.2
Length = 180
Score = 95.6 bits (237), Expect = 3e-21
Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 46/155 (29%)
Query: 4 TQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPLL 63
+ F+F AH + +HGH+Y V L + G++ G+V DF +++ +
Sbjct: 27 SPLFSFNCAHFIAF---KGFRETLHGHNYNVSLRLRGNIQGD-GYVIDFSILKEKVRKVC 82
Query: 64 EKLDHHCLNEIE---------------------------------ELENPTAENIAIWIW 90
++LDHH + + +++ + E I ++I
Sbjct: 83 KQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYIL 142
Query: 91 KRLSTSLSI---------LSSVRVYETPMSWVEYQ 116
+L + + V V E+P
Sbjct: 143 NQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVH 177
>3jyg_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.95A {Wolinella
succinogenes}
Length = 188
Score = 95.0 bits (235), Expect = 4e-21
Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 61/177 (34%)
Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDF 52
+I + F F HR+ + C +HGH +V + +E + G V DF
Sbjct: 5 YQIAKEFDFCYGHRVWSQELNPDFSLDPCLSCRHLHGHQGKVIVHLESREL-QRGMVTDF 63
Query: 53 FNIEQYFSPLLEKLDHHCLNEIE------------------------------------- 75
++ + + E LDH + +I+
Sbjct: 64 AHLNWFKRFIDEVLDHRFIIDIDDPLFPTLLPHFADKSALVWMEEGYARVDFERIKGESS 123
Query: 76 -----------ELENPTAENIAIWIWKRLSTSLS----ILSSVRVYETPMSWVEYQG 117
PT+E+IA W+ + L + + +SSV ETP S
Sbjct: 124 PILELYESFVVVRFVPTSESIASWLLELLRSRIQPLGVKVSSVEFLETPKSRARVYN 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 26.4 bits (58), Expect = 1.5
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 27/79 (34%)
Query: 54 NIEQYF----------SPLLEKLDH---HCLNEIEELENPTAE-------NIAIWIWKRL 93
N + YF L+ L L+E+ AE NI W+
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT-LDAEKVFTQGLNILEWLENPS 223
Query: 94 ST-SLSILSSVRVYETPMS 111
+T L S+ P+S
Sbjct: 224 NTPDKDYLLSI-----PIS 237
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A
Length = 1630
Score = 26.2 bits (58), Expect = 1.8
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 55 IEQYFSPLLEKLDHHCLNEIEELE 78
+ QYF LL++ LN+ E LE
Sbjct: 414 LLQYFGILLDQ---GQLNKYESLE 434
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 26.4 bits (58), Expect = 1.8
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 22 HKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQY---FSPLLEKLDHHCLNEIEELE 78
K G + + +T E+Y F PL+ + N+I +E
Sbjct: 114 RKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVE 173
Query: 79 NPTAENIA 86
E
Sbjct: 174 KLVNEKTC 181
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (acoat), structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 26.1 bits (57), Expect = 2.0
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 59 FSPLLEKLDHHCLNEIEELENPTAENIA 86
F PL+ ++ N +E+L +E++
Sbjct: 158 FEPLVPGFEYFEFNNVEDLRRKMSEDVC 185
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 2.0
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 12/30 (40%)
Query: 83 ENIAIWIWKRLSTSLSILSSVRVY---ETP 109
E A+ K+L SL ++Y P
Sbjct: 18 EKQAL---KKLQASL------KLYADDSAP 38
>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron
transfer, oxidoreductase, acetyl-COA formation,
WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica}
SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A
3git_A
Length = 729
Score = 25.5 bits (56), Expect = 2.8
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 54 NIEQYFSPLLEKLDHHCLNEIE 75
++ F +LE+ H +N E
Sbjct: 394 KMQADFEGVLERRIHDFINYGE 415
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 25.5 bits (55), Expect = 3.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 59 FSPLLEKLDHHCLNEIEELENPTAENIA 86
F PL+E ++ N++E L+ E A
Sbjct: 160 FLPLVEPVEFIPYNDVEALKRAVDEETA 187
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 24.4 bits (52), Expect = 5.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 55 IEQYFSPLLEKLDHHCLNEIEELEN 79
I+++F+ +E+LD L+EIE++ N
Sbjct: 388 IQEHFNKKIERLDTDDLDEIEKIAN 412
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic transport, mRNA export,
protein interaction; HET: ADP; 3.19A {Homo sapiens}
Length = 479
Score = 24.5 bits (52), Expect = 5.9
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 55 IEQYFSPLLEKLDHHCLNEIEELEN 79
I+++F+ +E+LD L+EIE++ N
Sbjct: 455 IQEHFNKKIERLDTDDLDEIEKIAN 479
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.136 0.430
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,129,335
Number of extensions: 48154
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 36
Length of query: 118
Length of database: 5,693,230
Length adjustment: 80
Effective length of query: 38
Effective length of database: 3,753,710
Effective search space: 142640980
Effective search space used: 142640980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)