RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62] (118 letters) >d2g64a1 d.96.1.2 (A:1-139) 6-pyruvoyl tetrahydropterin synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 139 Score = 119 bits (300), Expect = 6e-29 Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 16/133 (12%) Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCHRM--HGHSYRVELVMEGDVDPKTGFVD 50 + + + +F AAHRL KC+ HGH+Y ++ + G+VDP +G V Sbjct: 7 VTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVY 66 Query: 51 DFFNIEQYFSPLLEKLDHHCLN-EIEELEN--PTAENIAIWIWKRLSTSLS---ILSSVR 104 D +++ S +L+ +DH L+ ++E + T+EN+AI+++++L + +S +L V Sbjct: 67 DLAKLKKEMSLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLYKVT 126 Query: 105 VYETPMSWVEYQG 117 + ETP + Y+G Sbjct: 127 IEETPKNIFTYKG 139 >d1b66a_ d.96.1.2 (A:) 6-pyruvoyl tetrahydropterin synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 Score = 114 bits (287), Expect = 2e-27 Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 16/133 (12%) Query: 1 MKITQAFTFEAAHRLPR--------VPKTHKCHRM--HGHSYRVELVMEGDVDPKTGFVD 50 ++++ +F A+HRL + KC+ HGH+Y+V + + G++DP TG V Sbjct: 5 ARLSRLVSFSASHRLHSPSLSAEENLKVFGKCNNPNGHGHNYKVVVTIHGEIDPVTGMVM 64 Query: 51 DFFNIEQYF-SPLLEKLDHHCLN-EIEELEN--PTAENIAIWIWKRLSTSLSI--LSSVR 104 + ++++Y +++ LDH L+ ++ + T EN+A++IW+ L L + L V+ Sbjct: 65 NLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQRLLPVGALYKVK 124 Query: 105 VYETPMSWVEYQG 117 VYET + V Y+G Sbjct: 125 VYETDNNIVVYKG 137 >d2a0sa1 d.96.1.2 (A:18-180) 6-pyruvoyl tetrahydropterin synthase {Plasmodium vivax [TaxId: 5855]} Length = 163 Score = 92.5 bits (229), Expect = 8e-21 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 46/155 (29%) Query: 3 ITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVDPKTGFVDDFFNIEQYFSPL 62 + F+F AH + +HGH+Y V L + G++ G+V DF +++ + Sbjct: 9 ESPLFSFNCAHFIAF---KGFRETLHGHNYNVSLRLRGNIQG-DGYVIDFSILKEKVRKV 64 Query: 63 LEKLDHHCLNEIE---------------------------------ELENPTAENIAIWI 89 ++LDHH + + +++ + E I ++I Sbjct: 65 CKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYI 124 Query: 90 WKRLSTSLSI---------LSSVRVYETPMSWVEY 115 +L + + V V E+P Sbjct: 125 LNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATV 159 >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 Score = 25.5 bits (55), Expect = 1.2 Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 59 FSPLLEKLDHHCLNEIEELENPTAENIA 86 F PL+E ++ N++E L+ E A Sbjct: 152 FLPLVEPVEFIPYNDVEALKRAVDEETA 179 >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 115 Score = 23.6 bits (50), Expect = 5.1 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 10/98 (10%) Query: 1 MKITQAFTFEAAHRLPRVPKTHKCHRMHGHSYRVELVMEGDVD----PKTGFVDDFFNIE 56 +KI + TF HRL + + + Y + ++ E +D Sbjct: 1 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHVGFT 60 Query: 57 QYFSPLLEKLDHHCLNEIEEL------ENPTAENIAIW 88 + P L + +A ++A+ Sbjct: 61 KRIIPFLLGKQAGSRLSLVRTIQKWHQRAASAVSMALT 98 >d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]} Length = 729 Score = 23.2 bits (50), Expect = 7.0 Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 54 NIEQYFSPLLEKLDHHCLNEIE 75 ++ F +LE+ H +N E Sbjct: 394 KMQADFEGVLERRIHDFINYGE 415 >d1tbua1 d.38.1.3 (A:13-116) Peroxisomal long-chain acyl-CoA thioesterase 1, TES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 104 Score = 22.9 bits (49), Expect = 7.5 Identities = 4/28 (14%), Positives = 10/28 (35%), Gaps = 2/28 (7%) Query: 6 AFTFEAAHRLPRVPKTHKCHRMHGHSYR 33 + + A+ VP +H + + Sbjct: 35 SQSLLASLHT--VPLNFFPTSLHSYFIK 60 >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Score = 22.6 bits (48), Expect = 9.0 Identities = 4/20 (20%), Positives = 9/20 (45%) Query: 25 HRMHGHSYRVELVMEGDVDP 44 R + + V++G +D Sbjct: 333 LRTGVETRNTQAVLDGSLDQ 352 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.136 0.430 Gapped Lambda K H 0.267 0.0671 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 494,476 Number of extensions: 21588 Number of successful extensions: 51 Number of sequences better than 10.0: 1 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 18 Length of query: 118 Length of database: 2,407,596 Length adjustment: 74 Effective length of query: 44 Effective length of database: 1,391,576 Effective search space: 61229344 Effective search space used: 61229344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.0 bits)