HHsearch alignment for GI: 254781033 and conserved domain: COG1729
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=97.56 E-value=0.01 Score=39.21 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=51.2
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 455215886999999998884212698---99999999999525745699999999950231035789999999999996
Q gi|254781033|r 162 FESCRIGDLNSAQRYATKALDISPDAP---WVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENAD 238 (492)
Q Consensus 162 ~~al~~gd~~~A~~~~~~a~~~~P~~~---~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~ 238 (492)
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp-dallKlg~~~~~ 227 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP-DALLKLGVSLGR 227 (262)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHH
T ss_conf 9999838788999999999970999755602499988999862461679999999998389999882-899999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 6998999999987543133527999
Q gi|254781033|r 239 KGDMIASYHDAIESLKLCDNSIMAS 263 (492)
Q Consensus 239 ~~~~~~A~~~~~~a~~~~p~~~~a~ 263 (492)
T Consensus 228 l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 2177999999999998789977999