HHsearch alignment for GI: 254781033 and conserved domain: COG2909
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription].
Probab=97.71 E-value=0.0065 Score=40.75 Aligned_cols=91 Identities=16% Similarity=0.179 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCC-----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH--
Q ss_conf 99875322221000168999999726885-----------05799986545521588699999999888421269899--
Q gi|254781033|r 124 LLEVQIALAERQYNIAHEKLEMMLQIPAT-----------REFAVYSLYFESCRIGDLNSAQRYATKALDISPDAPWV-- 190 (492)
Q Consensus 124 Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~-----------~~~~~~gL~~~al~~gd~~~A~~~~~~a~~~~P~~~~a-- 190 (492)
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a--~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRA--QVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999736917899999999987077766312448899999999--9998458778999999999986612254000
Q ss_pred ---HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf ---99999999952574569999999995
Q gi|254781033|r 191 ---TEAVVQQYVLAKEWSRAITFLNQKKK 216 (492)
Q Consensus 191 ---~~~L~~l~~~~gdw~~A~~~l~~~~~ 216 (492)
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 25654056888873439999998887999