HHsearch alignment for GI: 254781033 and conserved domain: COG4105
>COG4105 ComL DNA uptake lipoprotein [General function prediction only].
Probab=96.85 E-value=0.049 Score=33.90 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=82.3
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 4552158869999999988842126989999---9999999525745699999999950231035789999999999996
Q gi|254781033|r 162 FESCRIGDLNSAQRYATKALDISPDAPWVTE---AVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENAD 238 (492)
Q Consensus 162 ~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~---~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~ 238 (492)
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl-kgLs--- 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL-KGLS--- 117 (254)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH---
T ss_conf 999863788999999999987099981128999999999881355899999999999878999871699999-9998---
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 69989999999875431335279999999999973994789999999998328989999999850789589999999999
Q gi|254781033|r 239 KGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYTHLLSENTVGKLKRALRLE 318 (492)
Q Consensus 239 ~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~La~a~~~~~~~~~~~al~~~~~l~ 318 (492)
T Consensus 118 ---------~~~~i~~~~rD--------------q~~~~~A~~~f~~~i~ryPnS~Ya--------~dA~~~i~~~~d~L 166 (254)
T COG4105 118 ---------YFFQIDDVTRD--------------QSAARAAFAAFKELVQRYPNSRYA--------PDAKARIVKLNDAL 166 (254)
T ss_pred ---------HHCCCCCCCCC--------------HHHHHHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHHHH
T ss_conf ---------75267754447--------------799999999999999878897023--------55999999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCCCCCC
Q ss_conf 8268983689999999998799889999988786609998----9999999999985799899999999996-2889995
Q gi|254781033|r 319 EINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRK----EIFLLLAQIEQANSHNTDKILYWTQSAL-HAMPDPL 393 (492)
Q Consensus 319 ~~~P~~~e~~~~LA~~~~~~g~~~~Ar~~l~~al~~~P~~----~~~~llA~ie~~e~~d~~~ar~wl~rA~-~a~~dp~ 393 (492)
T Consensus 167 ------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~-~-~~~vl~~N~p~s~ 238 (254)
T COG4105 167 ------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK-K-TAKVLGANYPDSQ 238 (254)
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH-H-HHHHHHHCCCCCC
T ss_conf ------8999999999999057699999999998714555204778999999999828727899-9-9999973689882
Q ss_pred EEC
Q ss_conf 275
Q gi|254781033|r 394 WIS 396 (492)
Q Consensus 394 W~c 396 (492)
T Consensus 239 ~~~ 241 (254)
T COG4105 239 WYK 241 (254)
T ss_pred CHH
T ss_conf 035