HHsearch alignment for GI: 254781033 and conserved domain: COG5010
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].
Probab=98.68 E-value=1.7e-05 Score=60.92 Aligned_cols=175 Identities=14% Similarity=0.049 Sum_probs=103.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999972688505799986545521588699999999888421269899999999999525745699999999950231
Q gi|254781033|r 141 EKLEMMLQIPATREFAVYSLYFESCRIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKE 220 (492)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~gL~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~ 220 (492)
T Consensus 55 al~~~~~~~p~d~~i--~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 55 ALGAAVLRNPEDLSI--AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred HHHHHHHCCCCHHHH--HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf 999998068201778--887777774055550078875540147454999999999999804568899999998436999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 03578999999999999669989999999875431335279999999999973994789999999998328989999999
Q gi|254781033|r 221 WNRNRAILLIARSLENADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYT 300 (492)
Q Consensus 221 ~~~~~a~l~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~La~a~~ 300 (492)
T Consensus 133 d~~----~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~--------- 199 (257)
T COG5010 133 DWE----AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA--------- 199 (257)
T ss_pred CHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---------
T ss_conf 746----6667789999736756778999999984258844666589999972779899999999986788---------
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 8507895899999999998268983689999999998799889999988786
Q gi|254781033|r 301 HLLSENTVGKLKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAM 352 (492)
Q Consensus 301 ~~~~~~~~~al~~~~~l~~~~P~~~e~~~~LA~~~~~~g~~~~Ar~~l~~al 352 (492)
T Consensus 200 ----------------------ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 200 ----------------------ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred ----------------------CCHHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf ----------------------763899989999840488677776242003