HHsearch alignment for GI: 254781033 and conserved domain: PRK02603
>PRK02603 photosystem I assembly protein Ycf3; Provisional.
Probab=98.35 E-value=2.6e-05 Score=59.41 Aligned_cols=100 Identities=15% Similarity=0.042 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999888421269899--9999999995257456999999999502310357899999999999966998999999987
Q gi|254781033|r 174 QRYATKALDISPDAPWV--TEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDAIE 251 (492)
Q Consensus 174 ~~~~~~a~~~~P~~~~a--~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~~~ 251 (492)
T Consensus 19 ad~~~k~~p~~~~~k~A~~Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D-~s~ilyNiGlIY~~~G~~~kAie~Y~k 97 (172)
T PRK02603 19 ADLILKILPINKKAKEAFVYYRDGMSAQNDGDYAEALENYEEALKLEEDPND-RSYILYNMAIIYASNGEHDKALETYHQ 97 (172)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999998158863368999997225777457999999999998727789620-899997799999986998899999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 54313352799999999999739
Q gi|254781033|r 252 SLKLCDNSIMASICAAKSLISQN 274 (492)
Q Consensus 252 a~~~~p~~~~a~~~~a~~l~~~g 274 (492)
T Consensus 98 ALeiNP~~~~AlNNlgvIY~k~G 120 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99868997899999999999985