HHsearch alignment for GI: 254781033 and conserved domain: PRK02603

>PRK02603 photosystem I assembly protein Ycf3; Provisional.
Probab=98.35  E-value=2.6e-05  Score=59.41  Aligned_cols=100  Identities=15%  Similarity=0.042  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999888421269899--9999999995257456999999999502310357899999999999966998999999987
Q gi|254781033|r  174 QRYATKALDISPDAPWV--TEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDAIE  251 (492)
Q Consensus       174 ~~~~~~a~~~~P~~~~a--~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~~~  251 (492)
T Consensus        19 ad~~~k~~p~~~~~k~A~~Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D-~s~ilyNiGlIY~~~G~~~kAie~Y~k   97 (172)
T PRK02603         19 ADLILKILPINKKAKEAFVYYRDGMSAQNDGDYAEALENYEEALKLEEDPND-RSYILYNMAIIYASNGEHDKALETYHQ   97 (172)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999998158863368999997225777457999999999998727789620-899997799999986998899999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             54313352799999999999739
Q gi|254781033|r  252 SLKLCDNSIMASICAAKSLISQN  274 (492)
Q Consensus       252 a~~~~p~~~~a~~~~a~~l~~~g  274 (492)
T Consensus        98 ALeiNP~~~~AlNNlgvIY~k~G  120 (172)
T PRK02603         98 ALELNPKQPSALNNIAVIYHKRG  120 (172)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99868997899999999999985