HHsearch alignment for GI: 254781033 and conserved domain: PRK10153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional.
Probab=93.27 E-value=0.63 Score=25.24 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 69999999988842126989999999999952----5745699999999950---2310357899999999999966998
Q gi|254781033|r 170 LNSAQRYATKALDISPDAPWVTEAVVQQYVLA----KEWSRAITFLNQKKKN---AKEWNRNRAILLIARSLENADKGDM 242 (492)
Q Consensus 170 ~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~----gdw~~A~~~l~~~~~~---~~~~~~~~a~l~~~~a~~~~~~~~~ 242 (492)
T Consensus 350 l~~~idLl~~~~~~ePdn~Yv~Ae~yi~~~~~~~l~~~~~~~l~~Ln~~l~~~~~~~~~~~-~~riyeAlAl~al~~~~~ 428 (512)
T PRK10153 350 LNKGSDLLEEILKSEPDFTYALAEKALADHVRQSLQPLDEKQLAALNTELDNIVALPGVNV-LSRIYEALAVQALVKGDT 428 (512)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHCCCH
T ss_conf 9999999999997299838999999999999985498889999999999999873324688-728899999999847999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 9999999875431335279999999999973994789999999998328989
Q gi|254781033|r 243 IASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPE 294 (492)
Q Consensus 243 ~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~ 294 (492)
T Consensus 429 ~~A~~~L~~~~~~~-~Svl~YILlgK~aEl~G~~~~A~e~Y~~Af~~~~s~~ 479 (512)
T PRK10153 429 DEAYQALNKAIELE-MSWLNYVLLGKVAELKGDNRLAADAYSTAFNLRPGEN 479 (512)
T ss_pred HHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 99999998675645-5699999999999964996688999999980388389