HHsearch alignment for GI: 254781033 and conserved domain: PRK12370
>PRK12370 invasion protein regulator; Provisional.
Probab=99.00 E-value=8.2e-06 Score=63.35 Aligned_cols=211 Identities=11% Similarity=0.003 Sum_probs=120.2
Q ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 998654552-1588699999999888421269899999999999525745699999999950231035789999999999
Q gi|254781033|r 157 VYSLYFESC-RIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLE 235 (492)
Q Consensus 157 ~~gL~~~al-~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~ 235 (492)
T Consensus 263 l~Gl~hl~rft~edn~~A~~LF~~Av~~dP~fA~AyA~la~cy~q~a~l~-----------~~d---------------- 315 (553)
T PRK12370 263 LRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMG-----------IFD---------------- 315 (553)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----------CCC----------------
T ss_conf 97899997318877999999999987339774466787899999763403-----------688----------------
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH---HHHHHHHHCCCCHHHHHH
Q ss_conf 99669989999999875431335279999999999973994789999999998328989---999999850789589999
Q gi|254781033|r 236 NADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPE---IANIYTHLLSENTVGKLK 312 (492)
Q Consensus 236 ~~~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~---La~a~~~~~~~~~~~al~ 312 (492)
T Consensus 316 --~~~~~~~A~~~AeravEldp~dp~a~~~lg~~~~L~~d~~~a~~~f~rA~~L~Pnsa~~~Y~~~W~~~maGr~~ea~~ 393 (553)
T PRK12370 316 --KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred --HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf --288999999999998743878878889999998723552244799987642599842579999999997586899999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999982689836899999999987998899999887866099-98999999999998579989999999999628899
Q gi|254781033|r 313 RALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAP-RKEIFLLLAQIEQANSHNTDKILYWTQSALHAMPD 391 (492)
Q Consensus 313 ~~~~l~~~~P~~~e~~~~LA~~~~~~g~~~~Ar~~l~~al~~~P-~~~~~~llA~ie~~e~~d~~~ar~wl~rA~~a~~d 391 (492)
T Consensus 394 ~i~~a~~LdP~~~~~~~~~l~~~~~~~~~d~a~~l~~~~~~q~~~~~~~~~s~~~m~~~~~g~~~~a~~~~-~~~~~~~~ 472 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT-KEISTQEI 472 (553)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHCCHHHC
T ss_conf 99998835986520279999999984231079999998625077878369999999997338389999999-85180311
Q ss_pred CCEECC
Q ss_conf 952756
Q gi|254781033|r 392 PLWISD 397 (492)
Q Consensus 392 p~W~c~ 397 (492)
T Consensus 473 ~~~~~v 478 (553)
T PRK12370 473 TGLIAV 478 (553)
T ss_pred CCHHHH
T ss_conf 473245