HHsearch alignment for GI: 254781033 and conserved domain: PRK12370

>PRK12370 invasion protein regulator; Provisional.
Probab=99.00  E-value=8.2e-06  Score=63.35  Aligned_cols=211  Identities=11%  Similarity=0.003  Sum_probs=120.2

Q ss_pred             HHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             998654552-1588699999999888421269899999999999525745699999999950231035789999999999
Q gi|254781033|r  157 VYSLYFESC-RIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLE  235 (492)
Q Consensus       157 ~~gL~~~al-~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~  235 (492)
T Consensus       263 l~Gl~hl~rft~edn~~A~~LF~~Av~~dP~fA~AyA~la~cy~q~a~l~-----------~~d----------------  315 (553)
T PRK12370        263 LRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMG-----------IFD----------------  315 (553)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----------CCC----------------
T ss_conf             97899997318877999999999987339774466787899999763403-----------688----------------


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH---HHHHHHHHCCCCHHHHHH
Q ss_conf             99669989999999875431335279999999999973994789999999998328989---999999850789589999
Q gi|254781033|r  236 NADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPE---IANIYTHLLSENTVGKLK  312 (492)
Q Consensus       236 ~~~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~---La~a~~~~~~~~~~~al~  312 (492)
T Consensus       316 --~~~~~~~A~~~AeravEldp~dp~a~~~lg~~~~L~~d~~~a~~~f~rA~~L~Pnsa~~~Y~~~W~~~maGr~~ea~~  393 (553)
T PRK12370        316 --KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             --HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             --288999999999998743878878889999998723552244799987642599842579999999997586899999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf             99999982689836899999999987998899999887866099-98999999999998579989999999999628899
Q gi|254781033|r  313 RALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAP-RKEIFLLLAQIEQANSHNTDKILYWTQSALHAMPD  391 (492)
Q Consensus       313 ~~~~l~~~~P~~~e~~~~LA~~~~~~g~~~~Ar~~l~~al~~~P-~~~~~~llA~ie~~e~~d~~~ar~wl~rA~~a~~d  391 (492)
T Consensus       394 ~i~~a~~LdP~~~~~~~~~l~~~~~~~~~d~a~~l~~~~~~q~~~~~~~~~s~~~m~~~~~g~~~~a~~~~-~~~~~~~~  472 (553)
T PRK12370        394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT-KEISTQEI  472 (553)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHCCHHHC
T ss_conf             99998835986520279999999984231079999998625077878369999999997338389999999-85180311


Q ss_pred             CCEECC
Q ss_conf             952756
Q gi|254781033|r  392 PLWISD  397 (492)
Q Consensus       392 p~W~c~  397 (492)
T Consensus       473 ~~~~~v  478 (553)
T PRK12370        473 TGLIAV  478 (553)
T ss_pred             CCHHHH
T ss_conf             473245