HHsearch alignment for GI: 254781033 and conserved domain: TIGR00540
>TIGR00540 hemY_coli hemY protein; InterPro: IPR005254 This is a family of uncharacterised proteins encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (Escherichia coli and Haemophilus influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. .
Probab=99.83 E-value=9.9e-16 Score=140.76 Aligned_cols=377 Identities=15% Similarity=0.052 Sum_probs=311.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 96799999999999999999734898489998997662218999999999999999999999998418288999999999
Q gi|254781033|r 1 MLRLIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFAVSRFFLSCPAMLFHMLHKRN 80 (492)
Q Consensus 1 M~r~l~~~~~i~~~~~~~~~l~~~~G~v~i~~~~~~ie~s~~~~i~~~~~~~~~~~ll~~l~~~i~~~p~~~~~~~~~rr 80 (492)
T Consensus 1 ~~~~~~~~~~~~~g~~~gp~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~w~~~~~ 80 (409)
T TIGR00540 1 LLKVLLLFLLLLAGLVAGPYIAGHQGYVLIETDNYNIETSVTGLAIFLILALAVLFAFEWGLTRFFRLGAHTYGWFSGRK 80 (409)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 84689999999987774000026555156520330234467899999999999999999998988862110223331024
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHH-HH
Q ss_conf 99999999999999721004787999986301346661589999987532222100016899999972688505799-98
Q gi|254781033|r 81 YDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEYLVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAV-YS 159 (492)
Q Consensus 81 ~~k~~~al~~gl~al~~Gd~~~A~k~~~~a~~~~~~~~~~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~~~~~~-~g 159 (492)
T Consensus 81 ~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~g~d~~~~~~~ 158 (409)
T TIGR00540 81 RRKARKQTLEGLLKLDEGDYAKAEKLLGKNAD--HAEEPVLNLLLAAEAAQQRGDEFRANRYLEEAAELAGNDNLPVEIA 158 (409)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 55566667887775302126788888631431--0235788888876665521411234567777766315664024567
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH----HHHHHHH
Q ss_conf 654552158869999999988842126989999999999952574569999999995023103578999----9999999
Q gi|254781033|r 160 LYFESCRIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAIL----LIARSLE 235 (492)
Q Consensus 160 L~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l----~~~~a~~ 235 (492)
T Consensus 159 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 238 (409)
T TIGR00540 159 RTRLLLARNELPAARHGVDKLLEVAPRNPEVLKLAEEAYLRTGAWSALDDILPNVANAGLGDDEEFKDLESKAWNGLLDE 238 (409)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78888763001023323567776401336789999988874334678888765555302454367888776665434444
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----HHHHHHHHCCCCHHHH
Q ss_conf 99669989999999875431335279999999999973994789999999998328989-----9999998507895899
Q gi|254781033|r 236 NADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPE-----IANIYTHLLSENTVGK 310 (492)
Q Consensus 236 ~~~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~-----La~a~~~~~~~~~~~a 310 (492)
T Consensus 239 ~~~~~g~~g~~~ww~~~~~~~~~~~~~~~~~~~~~~~c~d~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~ 318 (409)
T TIGR00540 239 KRNDEGSDGLLNWWNNQPRHTRNNVELKVALAEHLIDCDDHDTATELTFDGLKKLGDDTAISLPLLLPIPRLKPEDPEKL 318 (409)
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHH
T ss_conf 43002214677653012001244567888888887503553036788898887411431000022310001366765789
Q ss_pred HHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999999998268983--689999999998799889999988--7866099989999999999985799899999
Q gi|254781033|r 311 LKRALRLEEINKESV--ESLVIVSKIALEMGSIDQAHAKAM--LAMKIAPRKEIFLLLAQIEQANSHNTDKILY 380 (492)
Q Consensus 311 l~~~~~l~~~~P~~~--e~~~~LA~~~~~~g~~~~Ar~~l~--~al~~~P~~~~~~llA~ie~~e~~d~~~ar~ 380 (492)
T Consensus 319 ~~~~~~~~~~~~~~~~c~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~ 391 (409)
T TIGR00540 319 LKLLEKRAKNVGDKPKCLLWRALGYLLVKNGEWIEAADAFKNVAALPERPDAYDLAWLADALDRL-GDPELAEA 391 (409)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCHHHHHH
T ss_conf 99999887403520367777776667762120457888877666401001034688999998740-56568888