HHsearch alignment for GI: 254781033 and conserved domain: TIGR00540

>TIGR00540 hemY_coli hemY protein; InterPro: IPR005254 This is a family of uncharacterised proteins encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (Escherichia coli and Haemophilus influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. .
Probab=99.83  E-value=9.9e-16  Score=140.76  Aligned_cols=377  Identities=15%  Similarity=0.052  Sum_probs=311.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             96799999999999999999734898489998997662218999999999999999999999998418288999999999
Q gi|254781033|r    1 MLRLIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFAVSRFFLSCPAMLFHMLHKRN   80 (492)
Q Consensus         1 M~r~l~~~~~i~~~~~~~~~l~~~~G~v~i~~~~~~ie~s~~~~i~~~~~~~~~~~ll~~l~~~i~~~p~~~~~~~~~rr   80 (492)
T Consensus         1 ~~~~~~~~~~~~~g~~~gp~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~w~~~~~   80 (409)
T TIGR00540         1 LLKVLLLFLLLLAGLVAGPYIAGHQGYVLIETDNYNIETSVTGLAIFLILALAVLFAFEWGLTRFFRLGAHTYGWFSGRK   80 (409)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             84689999999987774000026555156520330234467899999999999999999998988862110223331024


Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHH-HH
Q ss_conf             99999999999999721004787999986301346661589999987532222100016899999972688505799-98
Q gi|254781033|r   81 YDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEYLVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAV-YS  159 (492)
Q Consensus        81 ~~k~~~al~~gl~al~~Gd~~~A~k~~~~a~~~~~~~~~~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~~~~~~-~g  159 (492)
T Consensus        81 ~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~g~d~~~~~~~  158 (409)
T TIGR00540        81 RRKARKQTLEGLLKLDEGDYAKAEKLLGKNAD--HAEEPVLNLLLAAEAAQQRGDEFRANRYLEEAAELAGNDNLPVEIA  158 (409)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             55566667887775302126788888631431--0235788888876665521411234567777766315664024567


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH----HHHHHHH
Q ss_conf             654552158869999999988842126989999999999952574569999999995023103578999----9999999
Q gi|254781033|r  160 LYFESCRIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAIL----LIARSLE  235 (492)
Q Consensus       160 L~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l----~~~~a~~  235 (492)
T Consensus       159 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~  238 (409)
T TIGR00540       159 RTRLLLARNELPAARHGVDKLLEVAPRNPEVLKLAEEAYLRTGAWSALDDILPNVANAGLGDDEEFKDLESKAWNGLLDE  238 (409)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             78888763001023323567776401336789999988874334678888765555302454367888776665434444


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----HHHHHHHHCCCCHHHH
Q ss_conf             99669989999999875431335279999999999973994789999999998328989-----9999998507895899
Q gi|254781033|r  236 NADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPE-----IANIYTHLLSENTVGK  310 (492)
Q Consensus       236 ~~~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~-----La~a~~~~~~~~~~~a  310 (492)
T Consensus       239 ~~~~~g~~g~~~ww~~~~~~~~~~~~~~~~~~~~~~~c~d~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~  318 (409)
T TIGR00540       239 KRNDEGSDGLLNWWNNQPRHTRNNVELKVALAEHLIDCDDHDTATELTFDGLKKLGDDTAISLPLLLPIPRLKPEDPEKL  318 (409)
T ss_pred             HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHH
T ss_conf             43002214677653012001244567888888887503553036788898887411431000022310001366765789


Q ss_pred             HHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             999999998268983--689999999998799889999988--7866099989999999999985799899999
Q gi|254781033|r  311 LKRALRLEEINKESV--ESLVIVSKIALEMGSIDQAHAKAM--LAMKIAPRKEIFLLLAQIEQANSHNTDKILY  380 (492)
Q Consensus       311 l~~~~~l~~~~P~~~--e~~~~LA~~~~~~g~~~~Ar~~l~--~al~~~P~~~~~~llA~ie~~e~~d~~~ar~  380 (492)
T Consensus       319 ~~~~~~~~~~~~~~~~c~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~  391 (409)
T TIGR00540       319 LKLLEKRAKNVGDKPKCLLWRALGYLLVKNGEWIEAADAFKNVAALPERPDAYDLAWLADALDRL-GDPELAEA  391 (409)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCHHHHHH
T ss_conf             99999887403520367777776667762120457888877666401001034688999998740-56568888