HHsearch alignment for GI: 254781033 and conserved domain: TIGR02521
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=99.54 E-value=6e-12 Score=111.22 Aligned_cols=190 Identities=18% Similarity=0.092 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999999999952574569999999995023103578999999999999669--989999999875431335279999999
Q gi|254781033|r 190 VTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKG--DMIASYHDAIESLKLCDNSIMASICAA 267 (492)
Q Consensus 190 a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~--~~~~A~~~~~~a~~~~p~~~~a~~~~a 267 (492)
T Consensus 39 ~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~~a~----~~lA~~Yq~~grP~~~~A~~~f~~Al~~~p~~g~~~NNYG 114 (247)
T TIGR02521 39 IRVQLALGYLEQGDLEKAKENLDKALEHDPDDYDAY----LALALYYQQLGRPELEKAEQSFRKALTLKPNNGDVLNNYG 114 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECHHH
T ss_conf 999999999860787899999999987376661289----9999999871799557899999998624899852320145
Q ss_pred HHHHHCC--CHHHHHHHHHHHHHHCCCHHHHH-----HHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999739--94789999999998328989999-----9998507895899999999998268983689999999998799
Q gi|254781033|r 268 KSLISQN--KKRKAEVILEKIWKVNPHPEIAN-----IYTHLLSENTVGKLKRALRLEEINKESVESLVIVSKIALEMGS 340 (492)
Q Consensus 268 ~~l~~~g--~~~~A~~~le~a~~~~p~p~La~-----a~~~~~~~~~~~al~~~~~l~~~~P~~~e~~~~LA~~~~~~g~ 340 (492)
T Consensus 115 ~FLC~~g~~~~~~A~~~F~~A~~~p~Y~~~~~~~eN~G~C~~~~g~~~~A~~~l~~Al~~dp~~p~~lleLa~l~~~~g~ 194 (247)
T TIGR02521 115 TFLCQQGNDKYEQAEQQFEAAIEDPLYPQPARSYENAGLCALKAGDTEKAEKYLTRALKIDPQRPESLLELAELYYERGQ 194 (247)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 77640489706899999999986688973302455499999861786889999999998587888557999999875077
Q ss_pred HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 88999998878660----999899999999999857998999999999
Q gi|254781033|r 341 IDQAHAKAMLAMKI----APRKEIFLLLAQIEQANSHNTDKILYWTQS 384 (492)
Q Consensus 341 ~~~Ar~~l~~al~~----~P~~~~~~llA~ie~~e~~d~~~ar~wl~r 384 (492)
T Consensus 195 ~~~A~~~l~ry~~~~G~~~~~a~sL~Lg~riA~~~-Gd~~~~~~y~~q 241 (247)
T TIGR02521 195 YAQARALLERYQQTVGVKNQTAESLWLGIRIARAL-GDVAAAKRYGAQ 241 (247)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-CCHHHHHHHHHH
T ss_conf 28999999999987367888873478999999984-429999999998