HHsearch alignment for GI: 254781033 and conserved domain: TIGR02917
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266 This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=99.93 E-value=5.6e-21 Score=181.71 Aligned_cols=299 Identities=17% Similarity=0.165 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHCCH---HHHHHHHH--------HHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHH
Q ss_conf 99999999972100---47879999--------86301346661589999987532222100016899999972688505
Q gi|254781033|r 86 KALYTGLMSIAAHN---IPLARKMH--------SYVSQQHTFHNEYLVYLLEVQIALAERQYNIAHEKLEMMLQIPATRE 154 (492)
Q Consensus 86 ~al~~gl~al~~Gd---~~~A~k~~--------~~a~~~~~~~~~~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~~~ 154 (492)
T Consensus 272 a~y~kAlv~~q~~~naG~~~A~~~~aqvlDhls~~~l~~~p--~~~~a~~lAG~~~y~lg~~~~A~~yl~~~l~~~P~~~ 349 (924)
T TIGR02917 272 AAYLKALVDFQKKNNAGYEDARETLAQVLDHLSQAALKSAP--EYLPALLLAGASEYQLGNLEQAEQYLNQILKAAPNSH 349 (924)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 89999999998335774489999999999999999996187--7425999999999996138999999999998668866
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 79998654552158869999999988842126989999999999952574569999999995023103578999999999
Q gi|254781033|r 155 FAVYSLYFESCRIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSL 234 (492)
Q Consensus 155 ~~~~gL~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~ 234 (492)
T Consensus 350 ~A~rllA~i~L~~g~~~~A~~~l~~~~~~~~~d~~~l~~lG~~~L~~g~~~~A~~yl~ka~~~~P~~----a~~~t~lG~ 425 (924)
T TIGR02917 350 QARRLLAAIQLREGRVDEAIATLSPALGLDSDDSALLSLLGEAYLAKGDFEKAAEYLAKASELDPEN----AAARTKLGI 425 (924)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCH----HHHHHHHHH
T ss_conf 8999999999862897899999998861588776899999999986389678999998761058980----889999998
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-HHH--HHHHHCCCCHHHHH
Q ss_conf 999669989999999875431335279999999999973994789999999998328989-999--99985078958999
Q gi|254781033|r 235 ENADKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPE-IAN--IYTHLLSENTVGKL 311 (492)
Q Consensus 235 ~~~~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~-La~--a~~~~~~~~~~~al 311 (492)
T Consensus 426 ~~L~~Gd~~~Ai~dL~~A~~l~~~~~~a~~~L~~~yL~~~~~dKAla~~~~l~~~~pd~p~~~nl~G~i~l~~~~~~kA~ 505 (924)
T TIGR02917 426 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGEFDKALAAAKKLEKKQPDNPSLHNLLGAIYLGKKDLAKAR 505 (924)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 86206883478999999997277753478999998874204899999999997528898268999999998517878999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999998268983689999999998799889999988786609998-99999999999857998999999999962889
Q gi|254781033|r 312 KRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRK-EIFLLLAQIEQANSHNTDKILYWTQSALHAMP 390 (492)
Q Consensus 312 ~~~~~l~~~~P~~~e~~~~LA~~~~~~g~~~~Ar~~l~~al~~~P~~-~~~~llA~ie~~e~~d~~~ar~wl~rA~~a~~ 390 (492)
T Consensus 506 ~~f~~AL~i~p~~~~A~~nLA~~d~~~~~~~~A~~r~~~~l~~~P~~~~a~~~La~L~~~~-g~~~~~~~~l~~A~~~~~ 584 (924)
T TIGR02917 506 EAFEKALKIEPDFFPAAANLARIDLQEGNPDDAKQRFEKVLTIDPKNLRALLALAELAART-GNEEEAVAWLEKAAEKNP 584 (924)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCH
T ss_conf 9999875318778478999999887428968999999999875743379999999999851-896899999999986281
Q ss_pred C
Q ss_conf 9
Q gi|254781033|r 391 D 391 (492)
Q Consensus 391 d 391 (492)
T Consensus 585 ~ 585 (924)
T TIGR02917 585 K 585 (924)
T ss_pred H
T ss_conf 7