HHsearch alignment for GI: 254781033 and conserved domain: TIGR03302
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=1.9e-05 Score=60.52 Aligned_cols=186 Identities=18% Similarity=0.157 Sum_probs=107.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 998654552158869999999988842126989999---99999995257456999999999502310357899999999
Q gi|254781033|r 157 VYSLYFESCRIGDLNSAQRYATKALDISPDAPWVTE---AVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARS 233 (492)
Q Consensus 157 ~~gL~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~---~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a 233 (492)
T Consensus 36 lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~~~~y~~A~~~~~~Fi~~yP~~~~~~ya~-y~~a 114 (235)
T TIGR03302 36 LYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY-YLRG 114 (235)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHH
T ss_conf 999999999878999999999999986899313799999999999976439999999999999887743499999-9987
Q ss_pred HHHH--------HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 9999--------66998999999987543133527999999999997399478999999999832898999999985078
Q gi|254781033|r 234 LENA--------DKGDMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYTHLLSE 305 (492)
Q Consensus 234 ~~~~--------~~~~~~~A~~~~~~a~~~~p~~~~a~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p~La~a~~~~~~~ 305 (492)
T Consensus 115 ~s~~~~~~~~~rDq~~~~~A~~~f~~~i~~yP~S~ya~--------------dA~~~i~~l~~~LA~~e~~ia~~Y~k~~ 180 (235)
T TIGR03302 115 LSNYKQIDDSDRDQTAAREAFEAFQELIRRYPNSEYAP--------------DAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99887366544580899999999999998889965799--------------9999999999999999999999999841
Q ss_pred CHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9589999999999826898---368999999999879988999998878660999
Q gi|254781033|r 306 NTVGKLKRALRLEEINKES---VESLVIVSKIALEMGSIDQAHAKAMLAMKIAPR 357 (492)
Q Consensus 306 ~~~~al~~~~~l~~~~P~~---~e~~~~LA~~~~~~g~~~~Ar~~l~~al~~~P~ 357 (492)
T Consensus 181 ~y~aAi~r~~~vl~~Yp~t~~~~eAl~~l~eay~~lg~~~~A~~~~~~l~~n~p~ 235 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLALGLTDLAQDAAAVLGANYPD 235 (235)
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 7099999999999868998513999999999999869989999999999753989