HHsearch alignment for GI: 254781033 and conserved domain: cd00189

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C.
Probab=98.50  E-value=7.4e-06  Score=63.74  Aligned_cols=95  Identities=11%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH-HHHHH--HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             9999999997399478999999999832898-99999--99850789589999999999826898368999999999879
Q gi|254781033|r  263 SICAAKSLISQNKKRKAEVILEKIWKVNPHP-EIANI--YTHLLSENTVGKLKRALRLEEINKESVESLVIVSKIALEMG  339 (492)
Q Consensus       263 ~~~~a~~l~~~g~~~~A~~~le~a~~~~p~p-~La~a--~~~~~~~~~~~al~~~~~l~~~~P~~~e~~~~LA~~~~~~g  339 (492)
T Consensus         3 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             99999999984999999999999998599989999999999998598589999999999869898999999999999949


Q ss_pred             CHHHHHHHHHHHHHCCCC
Q ss_conf             988999998878660999
Q gi|254781033|r  340 SIDQAHAKAMLAMKIAPR  357 (492)
Q Consensus       340 ~~~~Ar~~l~~al~~~P~  357 (492)
T Consensus        83 ~~~~A~~~~~~al~~~P~  100 (100)
T cd00189          83 KYEEALEAYEKALELDPN  100 (100)
T ss_pred             CHHHHHHHHHHHHHHCCC
T ss_conf             999999999999974908