HHsearch alignment for GI: 254781033 and conserved domain: cd05804
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=9.6e-06 Score=62.84 Aligned_cols=263 Identities=13% Similarity=0.083 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH----CCCC--HHHHHH
Q ss_conf 9999999999721004787999986301346661589999987532222100016899999972----6885--057999
Q gi|254781033|r 85 YKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEYLVYLLEVQIALAERQYNIAHEKLEMMLQ----IPAT--REFAVY 158 (492)
Q Consensus 85 ~~al~~gl~al~~Gd~~~A~k~~~~a~~~~~~~~~~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~----~~~~--~~~~~~ 158 (492)
T Consensus 44 E~~hv~a~~~~~~g~~~~A~~~~~~~l~~~--P~D~lalk~-~~~~f~lg~~~g~~~~~~~~l~~~~p~~~~~~~~~gm~ 120 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHH-HHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 999999999998799789999999999869--835999998-76741025413240569999872573489836999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86545521588699999999888421269899999999999525745699999999950231035789999999999996
Q gi|254781033|r 159 SLYFESCRIGDLNSAQRYATKALDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENAD 238 (492)
Q Consensus 159 gL~~~al~~gd~~~A~~~~~~a~~~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~ 238 (492)
T Consensus 121 AF--~leE~g~~~~Ae~~a~~al~~np~d~wa~HAvAHv~~~~g~~~eG~~~l~~~~~~w~~~~~l~~H~wWH~AL~~Le 198 (355)
T cd05804 121 AF--GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HH--HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99--9998588999999999999639999379999999999838878899999851752577885898999999999887
Q ss_pred CCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHC-CCHHHH-HHHHHHHHHHCCC-----HHHHHHHHHHCCC
Q ss_conf 699899999998754313352------79999999999973-994789-9999999983289-----8999999985078
Q gi|254781033|r 239 KGDMIASYHDAIESLKLCDNS------IMASICAAKSLISQ-NKKRKA-EVILEKIWKVNPH-----PEIANIYTHLLSE 305 (492)
Q Consensus 239 ~~~~~~A~~~~~~a~~~~p~~------~~a~~~~a~~l~~~-g~~~~A-~~~le~a~~~~p~-----p~La~a~~~~~~~ 305 (492)
T Consensus 199 ~g~~~~~l~iyD~~i~~~~~~~~~~d~~dAaSLL~RLel~G~~~v~~Rw~~la~~~~~~~~~~~~~F~D~H~~~ala~ag 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 78988999998887445668706999983999999999739987355799999999874565033199999999998489
Q ss_pred CHHH---HHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9589---99999999982689------83689999999998799889999988786
Q gi|254781033|r 306 NTVG---KLKRALRLEEINKE------SVESLVIVSKIALEMGSIDQAHAKAMLAM 352 (492)
Q Consensus 306 ~~~~---al~~~~~l~~~~P~------~~e~~~~LA~~~~~~g~~~~Ar~~l~~al 352 (492)
T Consensus 279 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~vg~pl~~Al~a~~~gd~~~a~~lL~p~~ 334 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999998763777320056500489999999998589999999999989