HHsearch alignment for GI: 254781033 and conserved domain: pfam04348
>pfam04348 LppC LppC putative lipoprotein. This family includes several bacterial outer membrane antigens, whose molecular function is unknown.
Probab=94.36 E-value=0.42 Score=26.65 Aligned_cols=108 Identities=12% Similarity=-0.071 Sum_probs=59.0
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCCHHHHHHHHHHH-H
Q ss_conf 99863013466615899999875322221000168999999726885---0579998654552158869999999988-8
Q gi|254781033|r 106 MHSYVSQQHTFHNEYLVYLLEVQIALAERQYNIAHEKLEMMLQIPAT---REFAVYSLYFESCRIGDLNSAQRYATKA-L 181 (492)
Q Consensus 106 ~~~~a~~~~~~~~~~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~---~~~~~~gL~~~al~~gd~~~A~~~~~~a-~ 181 (492)
T Consensus 11 YL~~A~~s~~-~~~~~~~L~Aa~a~i~eg~~~qA~~ll~~l~~~~L~~~q~~e~~Ll~A~l~~~~~~~~~Al~~L~~~~~ 89 (535)
T pfam04348 11 YLNKASQSQG-EQQNTYKLLAARVLIEENKIAQAQALLRELSVQQLTDEQKLDKSLLEAELAAAKRQNEVALQQLSHQHL 89 (535)
T ss_pred HHHHHHHCCH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 9999984394-779999999999999779999999999974041199999999999999999975999999998557981
Q ss_pred HHCCCCHH--HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 42126989--9999999999525745699999999
Q gi|254781033|r 182 DISPDAPW--VTEAVVQQYVLAKEWSRAITFLNQK 214 (492)
Q Consensus 182 ~~~P~~~~--a~~~L~~l~~~~gdw~~A~~~l~~~ 214 (492)
T Consensus 90 ~~L~~~q~~r~~~l~A~~~~~~~~~l~a~r~~i~l 124 (535)
T pfam04348 90 SGLSPSQQSRYYEGRARIAEARGDAIEAAKARIQM 124 (535)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 10799999999999999999769869999999986