HHsearch alignment for GI: 254781033 and conserved domain: pfam04733
>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=98.55 E-value=0.00018 Score=52.97 Aligned_cols=256 Identities=11% Similarity=0.024 Sum_probs=144.0
Q ss_pred HHCCHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 72100478799998630134666158---999998753222210001689999997268850579998654552158869
Q gi|254781033|r 95 IAAHNIPLARKMHSYVSQQHTFHNEY---LVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLN 171 (492)
Q Consensus 95 l~~Gd~~~A~k~~~~a~~~~~~~~~~---L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~~~~~~~gL~~~al~~gd~~ 171 (492)
T Consensus 12 Fy~G~Yq~~i~ea~~~---~~s~~~~~e~~~~~~Ra~IA--lg~~~~vl~e---i~~~~~p~L~av~~lA~y~~~~~~~~ 83 (290)
T pfam04733 12 FYLGNYQKAINESDVT---SLSEEALVERDVYMYRSYLA--LGSYQIVISE---IKESAATPLQAVRLLAEYLNSPSRKE 83 (290)
T ss_pred HHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHH--CCCHHHHHHH---CCCCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 9966999999998636---89913579999999999997--3770378886---26789831799999999874841145
Q ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999998884--2126989999999999952574569999999995023103578999999999999669989999999
Q gi|254781033|r 172 SAQRYATKALD--ISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDA 249 (492)
Q Consensus 172 ~A~~~~~~a~~--~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~ 249 (492)
T Consensus 84 ~~~~~l~~~~~~~~~~~~~~~~~~aati~~~~g~~e~AL~~l~~----~---~~lE~~--al~VQi~L~~nR~DLA~ke~ 154 (290)
T pfam04733 84 SILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDALKHLHK----G---ENLEAM--ALNVQILLKMHRIDLAEQQL 154 (290)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC----C---CCHHHH--HHHHHHHHHCCCHHHHHHHH
T ss_conf 69999999987401566789999999999977999999999855----8---966799--99999999728836799999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH-CCCHHHH--HHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8754313352799999999999739--947899999999983-2898999--9999850789589999999999826898
Q gi|254781033|r 250 IESLKLCDNSIMASICAAKSLISQN--KKRKAEVILEKIWKV-NPHPEIA--NIYTHLLSENTVGKLKRALRLEEINKES 324 (492)
Q Consensus 250 ~~a~~~~p~~~~a~~~~a~~l~~~g--~~~~A~~~le~a~~~-~p~p~La--~a~~~~~~~~~~~al~~~~~l~~~~P~~ 324 (492)
T Consensus 155 ~~~q~~~eDs~l~qLa~awv~l~~Ggek~q~A~yif~EL~~~~~~t~lllng~Av~~m~~~~~~eAe~~L~eAl~~d~~d 234 (290)
T pfam04733 155 KKMQQIDEDATLTQLANAWVKLAVGGEKIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKD 234 (290)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99884351059999999999997264778989999999985228978999999999987478799999999998728898
Q ss_pred HHHHHHHHHHHHHCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 368999999999879988-9999988786609998999999999
Q gi|254781033|r 325 VESLVIVSKIALEMGSID-QAHAKAMLAMKIAPRKEIFLLLAQI 367 (492)
Q Consensus 325 ~e~~~~LA~~~~~~g~~~-~Ar~~l~~al~~~P~~~~~~llA~i 367 (492)
T Consensus 235 ~dtlaNliv~s~~~gK~~e~~~ryl~qL~~~~p~H~~v~~~~~k 278 (290)
T pfam04733 235 PETLINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKDLNEK 278 (290)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 89999999999980998789999999998629998599999999