HHsearch alignment for GI: 254781033 and conserved domain: pfam04733

>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=98.55  E-value=0.00018  Score=52.97  Aligned_cols=256  Identities=11%  Similarity=0.024  Sum_probs=144.0

Q ss_pred             HHCCHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf             72100478799998630134666158---999998753222210001689999997268850579998654552158869
Q gi|254781033|r   95 IAAHNIPLARKMHSYVSQQHTFHNEY---LVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLN  171 (492)
Q Consensus        95 l~~Gd~~~A~k~~~~a~~~~~~~~~~---L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~~~~~~~gL~~~al~~gd~~  171 (492)
T Consensus        12 Fy~G~Yq~~i~ea~~~---~~s~~~~~e~~~~~~Ra~IA--lg~~~~vl~e---i~~~~~p~L~av~~lA~y~~~~~~~~   83 (290)
T pfam04733        12 FYLGNYQKAINESDVT---SLSEEALVERDVYMYRSYLA--LGSYQIVISE---IKESAATPLQAVRLLAEYLNSPSRKE   83 (290)
T ss_pred             HHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHH--CCCHHHHHHH---CCCCCCCHHHHHHHHHHHHCCCCCHH
T ss_conf             9966999999998636---89913579999999999997--3770378886---26789831799999999874841145


Q ss_pred             HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             99999998884--2126989999999999952574569999999995023103578999999999999669989999999
Q gi|254781033|r  172 SAQRYATKALD--ISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKGDMIASYHDA  249 (492)
Q Consensus       172 ~A~~~~~~a~~--~~P~~~~a~~~L~~l~~~~gdw~~A~~~l~~~~~~~~~~~~~~a~l~~~~a~~~~~~~~~~~A~~~~  249 (492)
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~aati~~~~g~~e~AL~~l~~----~---~~lE~~--al~VQi~L~~nR~DLA~ke~  154 (290)
T pfam04733        84 SILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDALKHLHK----G---ENLEAM--ALNVQILLKMHRIDLAEQQL  154 (290)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC----C---CCHHHH--HHHHHHHHHCCCHHHHHHHH
T ss_conf             69999999987401566789999999999977999999999855----8---966799--99999999728836799999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH-CCCHHHH--HHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             8754313352799999999999739--947899999999983-2898999--9999850789589999999999826898
Q gi|254781033|r  250 IESLKLCDNSIMASICAAKSLISQN--KKRKAEVILEKIWKV-NPHPEIA--NIYTHLLSENTVGKLKRALRLEEINKES  324 (492)
Q Consensus       250 ~~a~~~~p~~~~a~~~~a~~l~~~g--~~~~A~~~le~a~~~-~p~p~La--~a~~~~~~~~~~~al~~~~~l~~~~P~~  324 (492)
T Consensus       155 ~~~q~~~eDs~l~qLa~awv~l~~Ggek~q~A~yif~EL~~~~~~t~lllng~Av~~m~~~~~~eAe~~L~eAl~~d~~d  234 (290)
T pfam04733       155 KKMQQIDEDATLTQLANAWVKLAVGGEKIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKD  234 (290)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99884351059999999999997264778989999999985228978999999999987478799999999998728898


Q ss_pred             HHHHHHHHHHHHHCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             368999999999879988-9999988786609998999999999
Q gi|254781033|r  325 VESLVIVSKIALEMGSID-QAHAKAMLAMKIAPRKEIFLLLAQI  367 (492)
Q Consensus       325 ~e~~~~LA~~~~~~g~~~-~Ar~~l~~al~~~P~~~~~~llA~i  367 (492)
T Consensus       235 ~dtlaNliv~s~~~gK~~e~~~ryl~qL~~~~p~H~~v~~~~~k  278 (290)
T pfam04733       235 PETLINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKDLNEK  278 (290)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             89999999999980998789999999998629998599999999