HHsearch alignment for GI: 254781033 and conserved domain: pfam10345
>pfam10345 Cohesin_load Cohesin loading factor. Cohesin_load is a common cohesin loading factor protein that is conserved in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes but dispensable in G2 when cohesion has been established. It is referred to as both Ssl3, in pombe, and Scc4, in S.cerevisiae. It complexes with Mis4.
Probab=93.80 E-value=0.52 Score=25.87 Aligned_cols=117 Identities=13% Similarity=0.061 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC----H-HHHHHHH-HHHHHCC
Q ss_conf 0047879999863013----466615899999875322221000168999999726885----0-5799986-5455215
Q gi|254781033|r 98 HNIPLARKMHSYVSQQ----HTFHNEYLVYLLEVQIALAERQYNIAHEKLEMMLQIPAT----R-EFAVYSL-YFESCRI 167 (492)
Q Consensus 98 Gd~~~A~k~~~~a~~~----~~~~~~~L~~Ll~A~aA~~~gd~~~A~~~~~~~~~~~~~----~-~~~~~gL-~~~al~~ 167 (492)
T Consensus 75 ~N~d~Aet~LsK~i~l~~~~~l~dlkf~~q~Lla~~~~ktn~-kaAl~~l~~~I~~~e~~~~~~w~~~frll~~~l~l~~ 153 (593)
T pfam10345 75 ENIDLAETYLSKAILIAERNGLEDLKFVCQFLLARLLFKTNP-KAALKSLNKLIEDAETYQHNAWVYAFRLLKIQLLLQS 153 (593)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 679999999999999876179457999899999999975281-8899999999999862463329999999999998742
Q ss_pred CCHHHHHHHHHHHHHHCCC--CHHHH--HH--HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8869999999988842126--98999--99--9999995257456999999999
Q gi|254781033|r 168 GDLNSAQRYATKALDISPD--APWVT--EA--VVQQYVLAKEWSRAITFLNQKK 215 (492)
Q Consensus 168 gd~~~A~~~~~~a~~~~P~--~~~a~--~~--L~~l~~~~gdw~~A~~~l~~~~ 215 (492)
T Consensus 154 ~d~~~A~~~L~~l~~~a~~~~~~~~~v~~~l~~~~l~l~~~~~~d~l~~l~~~~ 207 (593)
T pfam10345 154 ADLAAALENLQSLAELANRRGDRKLFVVLSLLEALLHLYRGSPKDVLELLQEAI 207 (593)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 876899999999998742158689999999999989750398256999999999