BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781033|ref|YP_003065446.1| HemY domain-containing protein
[Candidatus Liberibacter asiaticus str. psy62]
(492 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 492
Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/492 (100%), Positives = 492/492 (100%)
Query: 1 MLRLIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFA 60
MLRLIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFA
Sbjct: 1 MLRLIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFA 60
Query: 61 VSRFFLSCPAMLFHMLHKRNYDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEY 120
VSRFFLSCPAMLFHMLHKRNYDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEY
Sbjct: 61 VSRFFLSCPAMLFHMLHKRNYDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEY 120
Query: 121 LVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLNSAQRYATKA 180
LVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLNSAQRYATKA
Sbjct: 121 LVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLNSAQRYATKA 180
Query: 181 LDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKG 240
LDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKG
Sbjct: 181 LDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKG 240
Query: 241 DMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYT 300
DMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYT
Sbjct: 241 DMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYT 300
Query: 301 HLLSENTVGKLKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRKEI 360
HLLSENTVGKLKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRKEI
Sbjct: 301 HLLSENTVGKLKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRKEI 360
Query: 361 FLLLAQIEQANSHNTDKILYWTQSALHAMPDPLWISDDGYLSSVWLPLSPISKTLCYFEW 420
FLLLAQIEQANSHNTDKILYWTQSALHAMPDPLWISDDGYLSSVWLPLSPISKTLCYFEW
Sbjct: 361 FLLLAQIEQANSHNTDKILYWTQSALHAMPDPLWISDDGYLSSVWLPLSPISKTLCYFEW 420
Query: 421 KIPTKSPEYISSENINFSLEMAYPADDLQSMLNNGKKNHLPSIKKVSSFEDSTIHPLDPH 480
KIPTKSPEYISSENINFSLEMAYPADDLQSMLNNGKKNHLPSIKKVSSFEDSTIHPLDPH
Sbjct: 421 KIPTKSPEYISSENINFSLEMAYPADDLQSMLNNGKKNHLPSIKKVSSFEDSTIHPLDPH 480
Query: 481 IRQPDDPGIKEQ 492
IRQPDDPGIKEQ
Sbjct: 481 IRQPDDPGIKEQ 492
>gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 269
Score = 29.3 bits (64), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 400 YLSSVWLPLSPISKTLC-YFEWKIPTKSPEYISSENI 435
++ +W L + +LC Y+EWKI T S SE I
Sbjct: 24 WIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKI 60
>gi|254780255|ref|YP_003064668.1| 30S ribosomal protein S3 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 227
Score = 29.3 bits (64), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 350 LAMKIAPRKEIFLLLAQIEQANSHNTDKILYWTQSALHAMPDPLWISDDGY--LSSVWLP 407
L++ P+ EI L I Q+ + ++ + + ++ A+ + DG ++S L
Sbjct: 101 LSVNEVPKPEINATL--IAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLN 158
Query: 408 LSPISKTLCYFEWKIPTKS 426
+ +S+T CY E ++P ++
Sbjct: 159 GAELSRTECYLEGRVPLQT 177
>gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family
[Candidatus Liberibacter asiaticus str. psy62]
Length = 246
Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 6 RYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILL 58
R FV L S ++ P D +++W R+Y + +V S +F L W L
Sbjct: 19 RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLF 69
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 25.0 bits (53), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 199 VLAKEWSRAITFLNQKK--KNAKEWNRNRAILLIARSLENADKGDMIASYHDAI 250
+L E A+ N++K K +E R R + + L DM+ HD +
Sbjct: 448 LLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQV 501
>gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 200
Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 367 IEQANSHNTDKILYWTQSALHAMPDPLWISD--DGYLSSVWLPLSPISKTL 415
I++ S + ++ W +L + I+D DGYL+ VW S I + L
Sbjct: 29 IQEIGSFTSPNLMRWIALSLFTIAS---ITDFFDGYLARVWNQTSNIGRML 76
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
str. psy62]
Length = 1828
Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 331 VSKIALEMGSIDQAHAKAMLAMKIAPRKEIFLLLAQIEQA 370
++ IAL + ++ ++ M ++ A RKEI L+ +I++A
Sbjct: 175 IAGIALRLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRA 214
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,802
Number of Sequences: 1233
Number of extensions: 12205
Number of successful extensions: 42
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 10
length of query: 492
length of database: 328,796
effective HSP length: 78
effective length of query: 414
effective length of database: 232,622
effective search space: 96305508
effective search space used: 96305508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)