BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] (492 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 492 Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/492 (100%), Positives = 492/492 (100%) Query: 1 MLRLIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFA 60 MLRLIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFA Sbjct: 1 MLRLIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFA 60 Query: 61 VSRFFLSCPAMLFHMLHKRNYDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEY 120 VSRFFLSCPAMLFHMLHKRNYDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEY Sbjct: 61 VSRFFLSCPAMLFHMLHKRNYDKGYKALYTGLMSIAAHNIPLARKMHSYVSQQHTFHNEY 120 Query: 121 LVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLNSAQRYATKA 180 LVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLNSAQRYATKA Sbjct: 121 LVYLLEVQIALAERQYNIAHEKLEMMLQIPATREFAVYSLYFESCRIGDLNSAQRYATKA 180 Query: 181 LDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKG 240 LDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKG Sbjct: 181 LDISPDAPWVTEAVVQQYVLAKEWSRAITFLNQKKKNAKEWNRNRAILLIARSLENADKG 240 Query: 241 DMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYT 300 DMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYT Sbjct: 241 DMIASYHDAIESLKLCDNSIMASICAAKSLISQNKKRKAEVILEKIWKVNPHPEIANIYT 300 Query: 301 HLLSENTVGKLKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRKEI 360 HLLSENTVGKLKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRKEI Sbjct: 301 HLLSENTVGKLKRALRLEEINKESVESLVIVSKIALEMGSIDQAHAKAMLAMKIAPRKEI 360 Query: 361 FLLLAQIEQANSHNTDKILYWTQSALHAMPDPLWISDDGYLSSVWLPLSPISKTLCYFEW 420 FLLLAQIEQANSHNTDKILYWTQSALHAMPDPLWISDDGYLSSVWLPLSPISKTLCYFEW Sbjct: 361 FLLLAQIEQANSHNTDKILYWTQSALHAMPDPLWISDDGYLSSVWLPLSPISKTLCYFEW 420 Query: 421 KIPTKSPEYISSENINFSLEMAYPADDLQSMLNNGKKNHLPSIKKVSSFEDSTIHPLDPH 480 KIPTKSPEYISSENINFSLEMAYPADDLQSMLNNGKKNHLPSIKKVSSFEDSTIHPLDPH Sbjct: 421 KIPTKSPEYISSENINFSLEMAYPADDLQSMLNNGKKNHLPSIKKVSSFEDSTIHPLDPH 480 Query: 481 IRQPDDPGIKEQ 492 IRQPDDPGIKEQ Sbjct: 481 IRQPDDPGIKEQ 492 >gi|254780774|ref|YP_003065187.1| phosphatidate cytidylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 269 Score = 29.3 bits (64), Expect = 0.15, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 400 YLSSVWLPLSPISKTLC-YFEWKIPTKSPEYISSENI 435 ++ +W L + +LC Y+EWKI T S SE I Sbjct: 24 WIGGIWFRLWTMVMSLCIYYEWKIITGSVSLSLSEKI 60 >gi|254780255|ref|YP_003064668.1| 30S ribosomal protein S3 [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 29.3 bits (64), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 4/79 (5%) Query: 350 LAMKIAPRKEIFLLLAQIEQANSHNTDKILYWTQSALHAMPDPLWISDDGY--LSSVWLP 407 L++ P+ EI L I Q+ + ++ + + ++ A+ + DG ++S L Sbjct: 101 LSVNEVPKPEINATL--IAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLN 158 Query: 408 LSPISKTLCYFEWKIPTKS 426 + +S+T CY E ++P ++ Sbjct: 159 GAELSRTECYLEGRVPLQT 177 >gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 6 RYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILL 58 R FV L S ++ P D +++W R+Y + +V S +F L W L Sbjct: 19 RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLF 69 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 25.0 bits (53), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 199 VLAKEWSRAITFLNQKK--KNAKEWNRNRAILLIARSLENADKGDMIASYHDAI 250 +L E A+ N++K K +E R R + + L DM+ HD + Sbjct: 448 LLLDEMGSALDIENEQKIWKVLREQRRGRTTIFASHRLSAIQDADMVFVLHDQV 501 >gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 200 Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 367 IEQANSHNTDKILYWTQSALHAMPDPLWISD--DGYLSSVWLPLSPISKTL 415 I++ S + ++ W +L + I+D DGYL+ VW S I + L Sbjct: 29 IQEIGSFTSPNLMRWIALSLFTIAS---ITDFFDGYLARVWNQTSNIGRML 76 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust. Identities = 12/40 (30%), Positives = 25/40 (62%) Query: 331 VSKIALEMGSIDQAHAKAMLAMKIAPRKEIFLLLAQIEQA 370 ++ IAL + ++ ++ M ++ A RKEI L+ +I++A Sbjct: 175 IAGIALRLIDPEEYSSEKMQSISSAVRKEIVLMTEEIDRA 214 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.134 0.400 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 309,802 Number of Sequences: 1233 Number of extensions: 12205 Number of successful extensions: 42 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 10 length of query: 492 length of database: 328,796 effective HSP length: 78 effective length of query: 414 effective length of database: 232,622 effective search space: 96305508 effective search space used: 96305508 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)