HHsearch alignment for GI: 254781034 and conserved domain: pfam01601
>pfam01601 Corona_S2 Coronavirus S2 glycoprotein. The coronavirus spike glycoprotein forms the characteristic 'corona' after which the group is named. The Spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 pfam01600 and S2.
Probab=94.62 E-value=0.3 Score=26.22 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=57.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45433014667776423467899999-75332032320266335103336788873112323220027899999999999
Q gi|254781034|r 29 VKKITWRKFFWEKILSNKTFFKILAL-VCVIVLTFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIIS 107 (344)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ggiial-~~~~~lq~~~~~~~~~~~~~a~~~~~~~~~~~~~~q~~~~~~~l~~~~~el~~ 107 (344)
T Consensus 198 v~da~~~amYT~sL~g~ma~ggitaaaaIPFa~~vQ~RlN~lglt~~VL~eNQk~iA-----------~sFN~Ai~~iq~ 266 (609)
T pfam01601 198 VVDAEMMAMYTASLVGAMALGGITAAAAIPFATQVQARLNYVGLTTDVLQENQKLIA-----------NSFNKALGNIQD 266 (609)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHEECCHHHHHHHHHHHHEEEHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_conf 788789988999999987614510310174699899886334020999998899999-----------999999999988
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999975311014478899888887633678999999999999999999999999995
Q gi|254781034|r 108 QNLSIAQQKDEETADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMET 166 (344)
Q Consensus 108 ~~~~~~s~~~e~~~~~e~~~~~~~~~~~~~~~v~~Le~~~~~~~~~~~~l~~~l~~~e~ 166 (344)
T Consensus 267 gf~tts~A------L~kiQdVVN~q~~aL~~L~~qL~~nFgAISssI~dIy~RLD~leA 319 (609)
T pfam01601 267 GFTTTASA------LSKIQDVVNQQGQALSQLTNQLSNNFGAISSSIQDIYSRLDALEA 319 (609)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 88999999------999999998889999999999875302156789999998887776