HHsearch alignment for GI: 254781034 and conserved domain: pfam01601

>pfam01601 Corona_S2 Coronavirus S2 glycoprotein. The coronavirus spike glycoprotein forms the characteristic 'corona' after which the group is named. The Spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 pfam01600 and S2.
Probab=94.62  E-value=0.3  Score=26.22  Aligned_cols=121  Identities=14%  Similarity=0.068  Sum_probs=57.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             45433014667776423467899999-75332032320266335103336788873112323220027899999999999
Q gi|254781034|r   29 VKKITWRKFFWEKILSNKTFFKILAL-VCVIVLTFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIIS  107 (344)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~ggiial-~~~~~lq~~~~~~~~~~~~~a~~~~~~~~~~~~~~q~~~~~~~l~~~~~el~~  107 (344)
T Consensus       198 v~da~~~amYT~sL~g~ma~ggitaaaaIPFa~~vQ~RlN~lglt~~VL~eNQk~iA-----------~sFN~Ai~~iq~  266 (609)
T pfam01601       198 VVDAEMMAMYTASLVGAMALGGITAAAAIPFATQVQARLNYVGLTTDVLQENQKLIA-----------NSFNKALGNIQD  266 (609)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCHHHEECCHHHHHHHHHHHHEEEHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_conf             788789988999999987614510310174699899886334020999998899999-----------999999999988


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999975311014478899888887633678999999999999999999999999995
Q gi|254781034|r  108 QNLSIAQQKDEETADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMET  166 (344)
Q Consensus       108 ~~~~~~s~~~e~~~~~e~~~~~~~~~~~~~~~v~~Le~~~~~~~~~~~~l~~~l~~~e~  166 (344)
T Consensus       267 gf~tts~A------L~kiQdVVN~q~~aL~~L~~qL~~nFgAISssI~dIy~RLD~leA  319 (609)
T pfam01601       267 GFTTTASA------LSKIQDVVNQQGQALSQLTNQLSNNFGAISSSIQDIYSRLDALEA  319 (609)
T ss_pred             HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             88999999------999999998889999999999875302156789999998887776