Query gi|254781034|ref|YP_003065447.1| hypothetical protein CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 344 No_of_seqs 130 out of 162 Neff 6.2 Searched_HMMs 13730 Date Wed Jun 1 11:13:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781034.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d256ba_ a.24.3.1 (A:) Cytochro 18.7 19 0.0014 12.2 2.2 31 278-308 66-96 (106) 2 d2cfua2 d.157.1.13 (A:20-524) 12.3 28 0.002 11.2 6.1 44 279-322 429-478 (505) 3 g1f8v.1 b.121.4.4 (A:,D:) Alph 9.8 34 0.0025 10.7 0.4 61 216-277 321-381 (395) 4 d2iy5a1 a.2.7.2 (A:15-84) Phen 9.2 9.6 0.0007 14.1 -2.7 38 286-323 8-45 (70) 5 d1jb0l_ f.31.1.1 (L:) Photosys 8.4 39 0.0028 10.3 3.5 28 29-56 108-135 (151) 6 d1gqea_ e.38.1.1 (A:) Polypept 7.2 45 0.0032 9.9 7.0 14 155-168 25-38 (362) 7 d1qsaa1 a.118.5.1 (A:1-450) 70 7.0 46 0.0034 9.8 6.1 43 283-325 384-430 (450) 8 d1v54i_ f.23.3.1 (I:) Mitochon 6.7 48 0.0035 9.7 3.4 38 28-65 3-40 (73) 9 d3b7ca1 d.17.4.16 (A:1-121) Un 6.7 48 0.0035 9.7 2.0 14 181-194 8-21 (121) 10 d2p90a1 c.56.8.1 (A:6-274) Hyp 6.6 50 0.0036 9.6 4.1 27 141-167 234-260 (269) No 1 >d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]} Probab=18.74 E-value=19 Score=12.23 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=23.8 Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCH Q ss_conf 8988899999999982998999998971998 Q gi|254781034|r 278 DAITDVIARIENNLKTGDLVKAAAEWDKIPE 308 (344) Q Consensus 278 ~~~dailaRae~aL~~GdL~~Al~el~~Lp~ 308 (344) ++....+-|++..++.|+++.|-..++.|.. T Consensus 66 d~L~~~ld~i~~la~~G~l~eAk~~l~~l~~ 96 (106) T d256ba_ 66 DILVGQIDDALKLANEGKVKEAQAAAEQLKT 96 (106) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999999999999886999999999999999 No 2 >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Probab=12.30 E-value=28 Score=11.18 Aligned_cols=44 Identities=9% Similarity=0.103 Sum_probs=33.6 Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHC------CHHHHHHHHHHHHHHH Q ss_conf 9888999999999829989999989719------9888999999999999 Q gi|254781034|r 279 AITDVIARIENNLKTGDLVKAAAEWDKI------PEKARQPSMFLRNALE 322 (344) Q Consensus 279 ~~dailaRae~aL~~GdL~~Al~el~~L------p~~a~~~~~~w~~~~e 322 (344) +.++++.+++.++.+||+.-|+.-++.| ...+|...++.+.++- T Consensus 429 G~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~ 478 (505) T d2cfua2 429 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 478 (505) T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999999998878989999999999629999999999999999999 No 3 >g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto virus [TaxId: 103782]} Probab=9.80 E-value=34 Score=10.65 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=39.9 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCC Q ss_conf 88755528999899999999999999975204677788899999999876324127887788 Q gi|254781034|r 216 LMQFANIKIPTTIEILAKFPKVSEEMVFASESLEKDSGFANYLLFQLTRLVKVRPIGGNIEG 277 (344) Q Consensus 216 L~~~A~~Gvpt~a~L~~~F~~~A~~~~~a~~~~~~~~g~~~~l~~~~~slv~vR~~~~~~~G 277 (344) |-.|+....|--.--.+.++.+++.+--+.. ...++.+|+|+.+-+++.+.+-+.-+.+-| T Consensus 321 Lyqf~~dSPp~D~~ALq~Yr~v~r~lPVAV~-a~~Na~~WErVk~ilks~l~~aS~iPGPvG 381 (395) T g1f8v.1 321 LFQFSGVSPPFDPLALECYHNLKMRFPVAVS-SRENSKFWEGVLRVLNQISGTLSVIPGPVG 381 (395) T ss_dssp TGGGCEECCCCCHHHHHHHHHHTTSSCSCBC-STTCCHHHHHHHHHHHHTCCC--------- T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHCCCEEEE-ECHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 7874588998668899999988742770344-301046899999999876666523887501 No 4 >d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]} Probab=9.19 E-value=9.6 Score=14.06 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=14.7 Q ss_pred HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 99999982998999998971998889999999999999 Q gi|254781034|r 286 RIENNLKTGDLVKAAAEWDKIPEKARQPSMFLRNALEA 323 (344) Q Consensus 286 Rae~aL~~GdL~~Al~el~~Lp~~a~~~~~~w~~~~ea 323 (344) |.++.=+.|-|......+..||...|.....++..++. T Consensus 8 r~~~lGKkG~i~~~~k~l~~l~~eek~~~G~~lN~~K~ 45 (70) T d2iy5a1 8 KARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKA 45 (70) T ss_dssp HHHHHHHHHHTTSTTSCTTTGGGCCTTHHHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 99992760599999987707998988996399999999 No 5 >d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]} Probab=8.39 E-value=39 Score=10.30 Aligned_cols=28 Identities=11% Similarity=-0.041 Sum_probs=15.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4543301466777642346789999975 Q gi|254781034|r 29 VKKITWRKFFWEKILSNKTFFKILALVC 56 (344) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ggiial~~ 56 (344) ..+...-+.|.+|.+.+++.|.+.|+.+ T Consensus 108 l~t~~gWs~F~~GF~~Gg~GGa~fAy~L 135 (151) T d1jb0l_ 108 LKTSEGWSQFTAGFFVGAMGSAFVAFFL 135 (151) T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHCHHHHCCCCHHHHHHHH T ss_conf 3371148886121021025389999999 No 6 >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Probab=7.16 E-value=45 Score=9.92 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=4.9 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999500 Q gi|254781034|r 155 QDIVTRLTKMETLT 168 (344) Q Consensus 155 ~~l~~~l~~~e~~~ 168 (344) +.+..|+.+++.+. T Consensus 25 d~kk~Rl~ELE~~l 38 (362) T d1gqea_ 25 DAKKERLEEVNAEL 38 (362) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 98999999999986 No 7 >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Probab=6.96 E-value=46 Score=9.82 Aligned_cols=43 Identities=12% Similarity=-0.010 Sum_probs=30.8 Q ss_pred HHHHHHHHHHCCCHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999999998299899999897----199888999999999999999 Q gi|254781034|r 283 VIARIENNLKTGDLVKAAAEWD----KIPEKARQPSMFLRNALEAHI 325 (344) Q Consensus 283 ilaRae~aL~~GdL~~Al~el~----~Lp~~a~~~~~~w~~~~eaRl 325 (344) .+.|+...+.-|....|..||. .+++.....+..+..+..-+- T Consensus 384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~ 430 (450) T d1qsaa1 384 EMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWD 430 (450) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH T ss_conf 98999999986994699999999986799999999999999879846 No 8 >d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]} Probab=6.73 E-value=48 Score=9.71 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=23.8 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH Q ss_conf 54543301466777642346789999975332032320 Q gi|254781034|r 28 DVKKITWRKFFWEKILSNKTFFKILALVCVIVLTFIFI 65 (344) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~ggiial~~~~~lq~~~~ 65 (344) ...++..++...+-+--..+..+++++++.....|.+. T Consensus 3 ~l~KPqmrGLl~~~lk~hl~~a~~lsl~~a~~~Kf~v~ 40 (73) T d1v54i_ 3 ALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVA 40 (73) T ss_dssp CCCCCCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 76621776799999999999999999999999998724 No 9 >d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]} Probab=6.73 E-value=48 Score=9.70 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=6.2 Q ss_pred HHHHHHHHHHHCCC Q ss_conf 99999999996699 Q gi|254781034|r 181 VSLLILKNALDKGE 194 (344) Q Consensus 181 ~A~~~L~~Ai~~G~ 194 (344) .++.....|+.+|- T Consensus 8 ~~i~~~~~A~~~gD 21 (121) T d3b7ca1 8 QLLKGQEEAWNRGD 21 (121) T ss_dssp HHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999998499 No 10 >d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]} Probab=6.58 E-value=50 Score=9.63 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999950 Q gi|254781034|r 141 ASLKQLISDLSKNYQDIVTRLTKMETL 167 (344) Q Consensus 141 ~~Le~~~~~~~~~~~~l~~~l~~~e~~ 167 (344) ...+.+++++..+..++..-+.++|.+ T Consensus 234 e~~e~~i~~l~e~~~e~~~~v~~LE~~ 260 (269) T d2p90a1 234 EKVHRQLMEQTEESSEIQRVVGALEQQ 260 (269) T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHH T ss_conf 999999999986287999999999986 Done!