Query         gi|254781034|ref|YP_003065447.1| hypothetical protein CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 344
No_of_seqs    130 out of 162
Neff          6.2 
Searched_HMMs 13730
Date          Wed Jun  1 11:13:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781034.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d256ba_ a.24.3.1 (A:) Cytochro  18.7      19  0.0014   12.2   2.2   31  278-308    66-96  (106)
  2 d2cfua2 d.157.1.13 (A:20-524)   12.3      28   0.002   11.2   6.1   44  279-322   429-478 (505)
  3 g1f8v.1 b.121.4.4 (A:,D:) Alph   9.8      34  0.0025   10.7   0.4   61  216-277   321-381 (395)
  4 d2iy5a1 a.2.7.2 (A:15-84) Phen   9.2     9.6  0.0007   14.1  -2.7   38  286-323     8-45  (70)
  5 d1jb0l_ f.31.1.1 (L:) Photosys   8.4      39  0.0028   10.3   3.5   28   29-56    108-135 (151)
  6 d1gqea_ e.38.1.1 (A:) Polypept   7.2      45  0.0032    9.9   7.0   14  155-168    25-38  (362)
  7 d1qsaa1 a.118.5.1 (A:1-450) 70   7.0      46  0.0034    9.8   6.1   43  283-325   384-430 (450)
  8 d1v54i_ f.23.3.1 (I:) Mitochon   6.7      48  0.0035    9.7   3.4   38   28-65      3-40  (73)
  9 d3b7ca1 d.17.4.16 (A:1-121) Un   6.7      48  0.0035    9.7   2.0   14  181-194     8-21  (121)
 10 d2p90a1 c.56.8.1 (A:6-274) Hyp   6.6      50  0.0036    9.6   4.1   27  141-167   234-260 (269)

No 1  
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=18.74  E-value=19  Score=12.23  Aligned_cols=31  Identities=16%  Similarity=0.197  Sum_probs=23.8

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCH
Q ss_conf             8988899999999982998999998971998
Q gi|254781034|r  278 DAITDVIARIENNLKTGDLVKAAAEWDKIPE  308 (344)
Q Consensus       278 ~~~dailaRae~aL~~GdL~~Al~el~~Lp~  308 (344)
                      ++....+-|++..++.|+++.|-..++.|..
T Consensus        66 d~L~~~ld~i~~la~~G~l~eAk~~l~~l~~   96 (106)
T d256ba_          66 DILVGQIDDALKLANEGKVKEAQAAAEQLKT   96 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999999999999886999999999999999


No 2  
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.30  E-value=28  Score=11.18  Aligned_cols=44  Identities=9%  Similarity=0.103  Sum_probs=33.6

Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHC------CHHHHHHHHHHHHHHH
Q ss_conf             9888999999999829989999989719------9888999999999999
Q gi|254781034|r  279 AITDVIARIENNLKTGDLVKAAAEWDKI------PEKARQPSMFLRNALE  322 (344)
Q Consensus       279 ~~dailaRae~aL~~GdL~~Al~el~~L------p~~a~~~~~~w~~~~e  322 (344)
                      +.++++.+++.++.+||+.-|+.-++.|      ...+|...++.+.++-
T Consensus       429 G~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~  478 (505)
T d2cfua2         429 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  478 (505)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999998878989999999999629999999999999999999


No 3  
>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto virus [TaxId: 103782]}
Probab=9.80  E-value=34  Score=10.65  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=39.9

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCC
Q ss_conf             88755528999899999999999999975204677788899999999876324127887788
Q gi|254781034|r  216 LMQFANIKIPTTIEILAKFPKVSEEMVFASESLEKDSGFANYLLFQLTRLVKVRPIGGNIEG  277 (344)
Q Consensus       216 L~~~A~~Gvpt~a~L~~~F~~~A~~~~~a~~~~~~~~g~~~~l~~~~~slv~vR~~~~~~~G  277 (344)
                      |-.|+....|--.--.+.++.+++.+--+.. ...++.+|+|+.+-+++.+.+-+.-+.+-|
T Consensus       321 Lyqf~~dSPp~D~~ALq~Yr~v~r~lPVAV~-a~~Na~~WErVk~ilks~l~~aS~iPGPvG  381 (395)
T g1f8v.1         321 LFQFSGVSPPFDPLALECYHNLKMRFPVAVS-SRENSKFWEGVLRVLNQISGTLSVIPGPVG  381 (395)
T ss_dssp             TGGGCEECCCCCHHHHHHHHHHTTSSCSCBC-STTCCHHHHHHHHHHHHTCCC---------
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHCCCEEEE-ECHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             7874588998668899999988742770344-301046899999999876666523887501


No 4  
>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]}
Probab=9.19  E-value=9.6  Score=14.06  Aligned_cols=38  Identities=21%  Similarity=0.161  Sum_probs=14.7

Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             99999982998999998971998889999999999999
Q gi|254781034|r  286 RIENNLKTGDLVKAAAEWDKIPEKARQPSMFLRNALEA  323 (344)
Q Consensus       286 Rae~aL~~GdL~~Al~el~~Lp~~a~~~~~~w~~~~ea  323 (344)
                      |.++.=+.|-|......+..||...|.....++..++.
T Consensus         8 r~~~lGKkG~i~~~~k~l~~l~~eek~~~G~~lN~~K~   45 (70)
T d2iy5a1           8 KARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKA   45 (70)
T ss_dssp             HHHHHHHHHHTTSTTSCTTTGGGCCTTHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99992760599999987707998988996399999999


No 5  
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=8.39  E-value=39  Score=10.30  Aligned_cols=28  Identities=11%  Similarity=-0.041  Sum_probs=15.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4543301466777642346789999975
Q gi|254781034|r   29 VKKITWRKFFWEKILSNKTFFKILALVC   56 (344)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~ggiial~~   56 (344)
                      ..+...-+.|.+|.+.+++.|.+.|+.+
T Consensus       108 l~t~~gWs~F~~GF~~Gg~GGa~fAy~L  135 (151)
T d1jb0l_         108 LKTSEGWSQFTAGFFVGAMGSAFVAFFL  135 (151)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHCHHHHCCCCHHHHHHHH
T ss_conf             3371148886121021025389999999


No 6  
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=7.16  E-value=45  Score=9.92  Aligned_cols=14  Identities=14%  Similarity=0.133  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999500
Q gi|254781034|r  155 QDIVTRLTKMETLT  168 (344)
Q Consensus       155 ~~l~~~l~~~e~~~  168 (344)
                      +.+..|+.+++.+.
T Consensus        25 d~kk~Rl~ELE~~l   38 (362)
T d1gqea_          25 DAKKERLEEVNAEL   38 (362)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             98999999999986


No 7  
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}
Probab=6.96  E-value=46  Score=9.82  Aligned_cols=43  Identities=12%  Similarity=-0.010  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998299899999897----199888999999999999999
Q gi|254781034|r  283 VIARIENNLKTGDLVKAAAEWD----KIPEKARQPSMFLRNALEAHI  325 (344)
Q Consensus       283 ilaRae~aL~~GdL~~Al~el~----~Lp~~a~~~~~~w~~~~eaRl  325 (344)
                      .+.|+...+.-|....|..||.    .+++.....+..+..+..-+-
T Consensus       384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~  430 (450)
T d1qsaa1         384 EMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWD  430 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
T ss_conf             98999999986994699999999986799999999999999879846


No 8  
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.73  E-value=48  Score=9.71  Aligned_cols=38  Identities=11%  Similarity=0.041  Sum_probs=23.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             54543301466777642346789999975332032320
Q gi|254781034|r   28 DVKKITWRKFFWEKILSNKTFFKILALVCVIVLTFIFI   65 (344)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~ggiial~~~~~lq~~~~   65 (344)
                      ...++..++...+-+--..+..+++++++.....|.+.
T Consensus         3 ~l~KPqmrGLl~~~lk~hl~~a~~lsl~~a~~~Kf~v~   40 (73)
T d1v54i_           3 ALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVA   40 (73)
T ss_dssp             CCCCCCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             76621776799999999999999999999999998724


No 9  
>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}
Probab=6.73  E-value=48  Score=9.70  Aligned_cols=14  Identities=21%  Similarity=0.245  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999999996699
Q gi|254781034|r  181 VSLLILKNALDKGE  194 (344)
Q Consensus       181 ~A~~~L~~Ai~~G~  194 (344)
                      .++.....|+.+|-
T Consensus         8 ~~i~~~~~A~~~gD   21 (121)
T d3b7ca1           8 QLLKGQEEAWNRGD   21 (121)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999998499


No 10 
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=6.58  E-value=50  Score=9.63  Aligned_cols=27  Identities=7%  Similarity=0.186  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999950
Q gi|254781034|r  141 ASLKQLISDLSKNYQDIVTRLTKMETL  167 (344)
Q Consensus       141 ~~Le~~~~~~~~~~~~l~~~l~~~e~~  167 (344)
                      ...+.+++++..+..++..-+.++|.+
T Consensus       234 e~~e~~i~~l~e~~~e~~~~v~~LE~~  260 (269)
T d2p90a1         234 EKVHRQLMEQTEESSEIQRVVGALEQQ  260 (269)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf             999999999986287999999999986


Done!