BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781034|ref|YP_003065447.1| hypothetical protein
CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62]
         (344 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781034|ref|YP_003065447.1| hypothetical protein CLIBASIA_04680 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 344

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/344 (100%), Positives = 344/344 (100%)

Query: 1   MSDSSMEKDIRRSTESPKQEETSPPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIVL 60
           MSDSSMEKDIRRSTESPKQEETSPPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIVL
Sbjct: 1   MSDSSMEKDIRRSTESPKQEETSPPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIVL 60

Query: 61  TFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQKDEET 120
           TFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQKDEET
Sbjct: 61  TFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQKDEET 120

Query: 121 ADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRM 180
           ADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRM
Sbjct: 121 ADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRM 180

Query: 181 VSLLILKNALDKGEYSSLNTTMQENFSVLKPCTATLMQFANIKIPTTIEILAKFPKVSEE 240
           VSLLILKNALDKGEYSSLNTTMQENFSVLKPCTATLMQFANIKIPTTIEILAKFPKVSEE
Sbjct: 181 VSLLILKNALDKGEYSSLNTTMQENFSVLKPCTATLMQFANIKIPTTIEILAKFPKVSEE 240

Query: 241 MVFASESLEKDSGFANYLLFQLTRLVKVRPIGGNIEGDAITDVIARIENNLKTGDLVKAA 300
           MVFASESLEKDSGFANYLLFQLTRLVKVRPIGGNIEGDAITDVIARIENNLKTGDLVKAA
Sbjct: 241 MVFASESLEKDSGFANYLLFQLTRLVKVRPIGGNIEGDAITDVIARIENNLKTGDLVKAA 300

Query: 301 AEWDKIPEKARQPSMFLRNALEAHICSDAILKEEMAKIPQTDLP 344
           AEWDKIPEKARQPSMFLRNALEAHICSDAILKEEMAKIPQTDLP
Sbjct: 301 AEWDKIPEKARQPSMFLRNALEAHICSDAILKEEMAKIPQTDLP 344


>gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 300

 Score = 27.3 bits (59), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 125 LANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLL 184
           + N Q  ++ PL EE    +QLIS+      DI + + K  +  AN LR       V  +
Sbjct: 127 VENVQRKDLNPL-EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREM 185

Query: 185 ILKNALDKGEYSSLNTT 201
           I K  +  G   +L +T
Sbjct: 186 IRKEEISLGHARTLVST 202


>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 492

 Score = 22.7 bits (47), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 255 ANYLLFQLTRLVKVRPIGGNIEGDAITDVIAR 286
           AN L+ + TR+V  +PIG N+        I R
Sbjct: 137 ANNLVTEHTRVVLEKPIGSNLSSAQEIHAITR 168


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.132    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,635
Number of Sequences: 1233
Number of extensions: 7783
Number of successful extensions: 25
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 7
length of query: 344
length of database: 328,796
effective HSP length: 75
effective length of query: 269
effective length of database: 236,321
effective search space: 63570349
effective search space used: 63570349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)