BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781034|ref|YP_003065447.1| hypothetical protein CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62] (344 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781034|ref|YP_003065447.1| hypothetical protein CLIBASIA_04680 [Candidatus Liberibacter asiaticus str. psy62] Length = 344 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/344 (100%), Positives = 344/344 (100%) Query: 1 MSDSSMEKDIRRSTESPKQEETSPPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIVL 60 MSDSSMEKDIRRSTESPKQEETSPPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIVL Sbjct: 1 MSDSSMEKDIRRSTESPKQEETSPPSCDVKKITWRKFFWEKILSNKTFFKILALVCVIVL 60 Query: 61 TFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQKDEET 120 TFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQKDEET Sbjct: 61 TFIFIFTALFTEKFLRTDNNLLLLPSVSPLKEDPKDISPVIEKEIISQNLSIAQQKDEET 120 Query: 121 ADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRM 180 ADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRM Sbjct: 121 ADKELANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRM 180 Query: 181 VSLLILKNALDKGEYSSLNTTMQENFSVLKPCTATLMQFANIKIPTTIEILAKFPKVSEE 240 VSLLILKNALDKGEYSSLNTTMQENFSVLKPCTATLMQFANIKIPTTIEILAKFPKVSEE Sbjct: 181 VSLLILKNALDKGEYSSLNTTMQENFSVLKPCTATLMQFANIKIPTTIEILAKFPKVSEE 240 Query: 241 MVFASESLEKDSGFANYLLFQLTRLVKVRPIGGNIEGDAITDVIARIENNLKTGDLVKAA 300 MVFASESLEKDSGFANYLLFQLTRLVKVRPIGGNIEGDAITDVIARIENNLKTGDLVKAA Sbjct: 241 MVFASESLEKDSGFANYLLFQLTRLVKVRPIGGNIEGDAITDVIARIENNLKTGDLVKAA 300 Query: 301 AEWDKIPEKARQPSMFLRNALEAHICSDAILKEEMAKIPQTDLP 344 AEWDKIPEKARQPSMFLRNALEAHICSDAILKEEMAKIPQTDLP Sbjct: 301 AEWDKIPEKARQPSMFLRNALEAHICSDAILKEEMAKIPQTDLP 344 >gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 27.3 bits (59), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 125 LANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLL 184 + N Q ++ PL EE +QLIS+ DI + + K + AN LR V + Sbjct: 127 VENVQRKDLNPL-EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREM 185 Query: 185 ILKNALDKGEYSSLNTT 201 I K + G +L +T Sbjct: 186 IRKEEISLGHARTLVST 202 >gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 492 Score = 22.7 bits (47), Expect = 8.7, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 255 ANYLLFQLTRLVKVRPIGGNIEGDAITDVIAR 286 AN L+ + TR+V +PIG N+ I R Sbjct: 137 ANNLVTEHTRVVLEKPIGSNLSSAQEIHAITR 168 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.132 0.364 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,635 Number of Sequences: 1233 Number of extensions: 7783 Number of successful extensions: 25 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 7 length of query: 344 length of database: 328,796 effective HSP length: 75 effective length of query: 269 effective length of database: 236,321 effective search space: 63570349 effective search space used: 63570349 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 39 (19.6 bits)