Query gi|254781036|ref|YP_003065449.1| hypothetical protein CLIBASIA_04690 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 65
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 20:45:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781036.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2ifo_A Inovirus; helical viru 13.2 79 0.0023 15.4 1.1 21 3-23 19-39 (46)
2 >1td4_A Head decoration protei 8.4 49 0.0015 16.4 -1.3 20 16-35 77-96 (115)
3 >2uvj_A TOGB, ABC type peripla 6.8 64 0.0019 15.8 -1.4 48 14-61 72-129 (173)
4 >1vd0_A Head decoration protei 5.8 75 0.0022 15.5 -1.5 19 16-34 73-91 (109)
5 >1c5e_A Head decoration protei 5.4 72 0.0021 15.6 -1.7 19 16-34 59-77 (95)
6 >2qtc_A Pyruvate dehydrogenase 5.2 2.1E+02 0.0062 13.1 0.6 11 35-45 37-47 (67)
7 >2yzc_A Uricase; oxidoreductas 5.1 2.6E+02 0.0077 12.7 0.9 17 29-45 85-101 (302)
8 >2iba_A Uricase, urate oxidase 4.5 3E+02 0.0088 12.4 0.9 17 29-45 77-93 (302)
9 >3bwv_A Putative 5'(3')-deoxyr 4.3 3.1E+02 0.0093 12.2 0.9 30 19-48 5-34 (180)
10 >1tqz_A Necap1; endocytosis, s 4.2 3E+02 0.0088 12.4 0.7 18 23-40 110-127 (133)
No 1
>>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} (A:)
Probab=13.20 E-value=79 Score=15.36 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 152125569999999861201
Q gi|254781036|r 3 IAPFGSLGVAVLSRYVKSGVF 23 (65)
Q Consensus 3 iapfgslgvavlsryvksgvf 23 (65)
+.|.|+.|.|||+--|---|+
T Consensus 19 ~gPi~~IG~AVL~V~V~~~VY 39 (46)
T 2ifo_A 19 AGPIAAIGGAVLTVMVGIKVY 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHEEEEEEEEEEHH
T ss_conf 586233101324643310169
No 2
>>1td4_A Head decoration protein; SHP, viral protein; 1.50A {Enterobacteria phage P21} (A:)
Probab=8.44 E-value=49 Score=16.41 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=14.7
Q ss_pred HHHHHCCCCHHHHHHHHHHH
Q ss_conf 99861201544413232024
Q gi|254781036|r 16 RYVKSGVFNLDSLLVDFSVS 35 (65)
Q Consensus 16 ryvksgvfnldsllvdfsvs 35 (65)
.|-|||.|+.++++---||.
T Consensus 77 t~YKsGtF~~~av~WPesvd 96 (115)
T 1td4_A 77 TYYKSGTFATEAIHWPEXVD 96 (115)
T ss_dssp EEECEEEEEGGGSCCCTTCC
T ss_pred EEEEECCEEEEEECCCHHHH
T ss_conf 89972514764201834566
No 3
>>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A (A:1-117,A:285-340)
Probab=6.78 E-value=64 Score=15.82 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=27.6
Q ss_pred HHHHHHHCCC-CHHHHHH------HHHHHHHHHH-H--HHCCCCHHHHHHHEECCHHH
Q ss_conf 9999861201-5444132------3202476531-1--11045546512330057277
Q gi|254781036|r 14 LSRYVKSGVF-NLDSLLV------DFSVSLKEHF-F--DTYSIPWHSIFYFVSENSKE 61 (65)
Q Consensus 14 lsryvksgvf-nldsllv------dfsvslkehf-f--dtysipwhsifyfvsenske 61 (65)
+.+|+..|.+ +|+.++- +|.-++.+-. + ..|.+||-+-++-++.|||.
T Consensus 72 ~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~dGk~ygiP~~~~~~~i~~~sk~ 129 (173)
T 2uvj_A 72 LPIFSKDGTGFYNLFSVKEQLDLAQFDPKELQQTTVNGKLNGIPISAQMLSIGKSTKH 129 (173)
T ss_dssp HHHHCTTSCSBCCGGGGTTTSCGGGSCHHHHHTTEETTEECCEEEEEEEEEEBTTCSC
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCCEEECCCCCC
T ss_conf 9999981986677444441202454234421124789874455212532020456888
No 4
>>1vd0_A Head decoration protein; virus/viral protein, capsid protein, structural genomics, NPPSFA; NMR {Enterobacteria phage lambda} (A:)
Probab=5.76 E-value=75 Score=15.47 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=14.9
Q ss_pred HHHHHCCCCHHHHHHHHHH
Q ss_conf 9986120154441323202
Q gi|254781036|r 16 RYVKSGVFNLDSLLVDFSV 34 (65)
Q Consensus 16 ryvksgvfnldsllvdfsv 34 (65)
.|-|||.|+.+.++---||
T Consensus 73 tyYKsGtF~~~av~WP~sV 91 (109)
T 1vd0_A 73 TFYKSGTFRYEDVLWPEAA 91 (109)
T ss_dssp EEECSBCCCTTTSCCCTTC
T ss_pred EEEEECCEEEEEECCCCHH
T ss_conf 8996251576531085002
No 5
>>1c5e_A Head decoration protein; head protein D, protein virus assembly, phage display; 1.10A {Bacteriophage lambda} (A:)
Probab=5.44 E-value=72 Score=15.56 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=14.9
Q ss_pred HHHHHCCCCHHHHHHHHHH
Q ss_conf 9986120154441323202
Q gi|254781036|r 16 RYVKSGVFNLDSLLVDFSV 34 (65)
Q Consensus 16 ryvksgvfnldsllvdfsv 34 (65)
.|-|||.|+.++++---||
T Consensus 59 tyYKsGtF~~~av~WP~sV 77 (95)
T 1c5e_A 59 TFYKSGTFRYEDVLWPEAA 77 (95)
T ss_dssp EEECEEEECTTTSCCCTTC
T ss_pred EEEEECCEEEEEECCCCHH
T ss_conf 9997151577531085014
No 6
>>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, X-RAY diffraction, glycolysis, magnesium, metal-binding, oxidoreductase; HET: TDK; 1.77A {Escherichia coli} (A:296-362)
Probab=5.24 E-value=2.1e+02 Score=13.15 Aligned_cols=11 Identities=45% Similarity=1.047 Sum_probs=7.9
Q ss_pred HHHHHHHHHCC
Q ss_conf 47653111104
Q gi|254781036|r 35 SLKEHFFDTYS 45 (65)
Q Consensus 35 slkehffdtys 45 (65)
-..||||..|.
T Consensus 37 y~RehFFg~~P 47 (67)
T 2qtc_A 37 YVREHFFGKYP 47 (67)
T ss_dssp HHHHHTSTTSH
T ss_pred CCCCCCCCCCH
T ss_conf 11223567525
No 7
>>2yzc_A Uricase; oxidoreductase, allantoate; HET: 1AL; 1.88A {Arthrobacter globiformis} (A:)
Probab=5.07 E-value=2.6e+02 Score=12.67 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 32320247653111104
Q gi|254781036|r 29 LVDFSVSLKEHFFDTYS 45 (65)
Q Consensus 29 lvdfsvslkehffdtys 45 (65)
.-+|..-|-.||.++|+
T Consensus 85 ~E~Fa~~L~~HFl~~y~ 101 (302)
T 2yzc_A 85 TEEFLLRLGKHFTEGFD 101 (302)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 79999999998717388
No 8
>>2iba_A Uricase, urate oxidase; URIC acid degradation, T-fold domain, tetrameric enzyme, oxidoreductase; HET: AZA; 1.50A {Aspergillus flavus} (A:)
Probab=4.55 E-value=3e+02 Score=12.37 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 32320247653111104
Q gi|254781036|r 29 LVDFSVSLKEHFFDTYS 45 (65)
Q Consensus 29 lvdfsvslkehffdtys 45 (65)
.-+|..-|-.||.++|+
T Consensus 77 ~E~Fa~~L~~HFl~~y~ 93 (302)
T 2iba_A 77 PELFGSILGTHFIEKYN 93 (302)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 89999999998717488
No 9
>>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein, structural genomics; HET: MSE; 1.55A {Staphylococcus epidermidis atcc 12228} (A:)
Probab=4.31 E-value=3.1e+02 Score=12.25 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=22.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 612015444132320247653111104554
Q gi|254781036|r 19 KSGVFNLDSLLVDFSVSLKEHFFDTYSIPW 48 (65)
Q Consensus 19 ksgvfnldsllvdfsvslkehffdtysipw 48 (65)
|.=+|.+|..|+|+.-...+.+...+.++-
T Consensus 5 k~iiFD~DGTL~D~~~~~~~~~~~~~g~~~ 34 (180)
T 3bwv_A 5 QRIAIDXDEVLADTLGAVVKAVNERADLNI 34 (180)
T ss_dssp CEEEEETBTTTBCHHHHHHHHHHHHSCCCC
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 899998997552549999999987558777
No 10
>>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} (A:)
Probab=4.23 E-value=3e+02 Score=12.36 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 154441323202476531
Q gi|254781036|r 23 FNLDSLLVDFSVSLKEHF 40 (65)
Q Consensus 23 fnldsllvdfsvslkehf 40 (65)
|.--+---||.|.|.+|+
T Consensus 110 F~dR~dAFDFnvaLqD~~ 127 (133)
T 1tqz_A 110 FTDRGDAFDFNVSLQDHF 127 (133)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHH
T ss_conf 143564233206899999
Done!