Query gi|254781036|ref|YP_003065449.1| hypothetical protein CLIBASIA_04690 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 65
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 23:47:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781036.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1td4_A Head decoration protein 7.4 41 0.0017 16.0 -1.3 19 16-34 77-95 (115)
2 3l8w_A Uricase, urate oxidase; 6.6 1.3E+02 0.0056 13.4 0.9 17 29-45 77-93 (296)
3 2yzc_A Uricase; oxidoreductase 6.3 1.4E+02 0.0059 13.3 0.9 17 29-45 85-101 (302)
4 2ifo_A Inovirus; helical virus 6.0 1.8E+02 0.0075 12.7 1.5 20 4-23 20-39 (46)
5 1tqz_A Necap1; endocytosis, st 5.1 1.7E+02 0.007 12.9 0.7 18 23-40 110-127 (133)
6 1ng7_A Poliovirus 3A-N, genome 4.9 92 0.0039 14.2 -0.7 11 55-65 30-40 (60)
7 1vd0_A Head decoration protein 3.9 85 0.0036 14.4 -1.5 19 16-34 73-91 (109)
8 1c5e_A Head decoration protein 3.9 81 0.0034 14.5 -1.6 19 16-34 59-77 (95)
9 1loi_A Cyclic 3',5'-AMP specif 3.6 2.7E+02 0.012 11.8 0.9 15 37-51 4-18 (26)
10 1j2g_A Uricase, urate oxidase; 3.3 2.9E+02 0.012 11.6 0.9 24 29-52 92-126 (319)
No 1
>1td4_A Head decoration protein; SHP, viral protein; 1.50A {Enterobacteria phage P21} SCOP: b.85.2.1 PDB: 1td3_A 1td0_A
Probab=7.35 E-value=41 Score=16.01 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=14.1
Q ss_pred HHHHHCCCCHHHHHHHHHH
Q ss_conf 9986120154441323202
Q gi|254781036|r 16 RYVKSGVFNLDSLLVDFSV 34 (65)
Q Consensus 16 ryvksgvfnldsllvdfsv 34 (65)
.|-|||.|+.++++---||
T Consensus 77 tyYKsGtF~~~av~WP~sv 95 (115)
T 1td4_A 77 TYYKSGTFATEAIHWPESV 95 (115)
T ss_dssp EEECEEEEEGGGSCCCTTC
T ss_pred EEEEECCEEEEEECCCHHH
T ss_conf 8997151475420173356
No 2
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation, xanthine, inhibition aspergillus flavus, acetylation, peroxisome; HET: XAN 4PO; 1.00A {Aspergillus flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A* 1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A* 1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 2iba_A* 2ic0_A* ...
Probab=6.56 E-value=1.3e+02 Score=13.41 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 32320247653111104
Q gi|254781036|r 29 LVDFSVSLKEHFFDTYS 45 (65)
Q Consensus 29 lvdfsvslkehffdtys 45 (65)
.-+|..-|-.||.++|+
T Consensus 77 ~E~F~~~L~~hFl~~y~ 93 (296)
T 3l8w_A 77 PELFGSILGTHFIEKYN 93 (296)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 89999999998705288
No 3
>2yzc_A Uricase; oxidoreductase, allantoate; HET: 1AL; 1.88A {Arthrobacter globiformis} SCOP: d.96.1.4 d.96.1.4 PDB: 2yzb_A* 2yzd_A* 2yze_A 1vax_A 1vay_A*
Probab=6.29 E-value=1.4e+02 Score=13.29 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 32320247653111104
Q gi|254781036|r 29 LVDFSVSLKEHFFDTYS 45 (65)
Q Consensus 29 lvdfsvslkehffdtys 45 (65)
.-+|...|-.||.++|+
T Consensus 85 ~E~Fa~~L~~HFl~~y~ 101 (302)
T 2yzc_A 85 TEEFLLRLGKHFTEGFD 101 (302)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 79999999998705378
No 4
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=6.03 E-value=1.8e+02 Score=12.74 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHHHCCC
Q ss_conf 52125569999999861201
Q gi|254781036|r 4 APFGSLGVAVLSRYVKSGVF 23 (65)
Q Consensus 4 apfgslgvavlsryvksgvf 23 (65)
.|.++.|.|||.-.|-.-|+
T Consensus 20 ~pi~~ig~avl~v~v~~~vy 39 (46)
T 2ifo_A 20 GPIAAIGGAVLTVMVGIKVY 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 84467646475334568899
No 5
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=5.12 E-value=1.7e+02 Score=12.90 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 154441323202476531
Q gi|254781036|r 23 FNLDSLLVDFSVSLKEHF 40 (65)
Q Consensus 23 fnldsllvdfsvslkehf 40 (65)
|.--+---||+|.|.+|+
T Consensus 110 F~dR~dAFDFnvaLqd~~ 127 (133)
T 1tqz_A 110 FTDRGDAFDFNVSLQDHF 127 (133)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHH
T ss_conf 144664320558999999
No 6
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=4.91 E-value=92 Score=14.23 Aligned_cols=11 Identities=36% Similarity=0.909 Sum_probs=7.1
Q ss_pred EECCHHHHHCC
Q ss_conf 00572776309
Q gi|254781036|r 55 VSENSKEYCKK 65 (65)
Q Consensus 55 vsenskeyckk 65 (65)
-||.-.||||+
T Consensus 30 DseEVReYCk~ 40 (60)
T 1ng7_A 30 DSQEVRDYCEK 40 (60)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 85999999997
No 7
>1vd0_A Head decoration protein; virus/viral protein, capsid protein, structural genomics, NPPSFA; NMR {Enterobacteria phage lambda} SCOP: b.85.2.1
Probab=3.94 E-value=85 Score=14.41 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=14.6
Q ss_pred HHHHHCCCCHHHHHHHHHH
Q ss_conf 9986120154441323202
Q gi|254781036|r 16 RYVKSGVFNLDSLLVDFSV 34 (65)
Q Consensus 16 ryvksgvfnldsllvdfsv 34 (65)
.|-|||.|+.+.++---||
T Consensus 73 tyYKsG~F~~~av~WP~sv 91 (109)
T 1vd0_A 73 TFYKSGTFRYEDVLWPEAA 91 (109)
T ss_dssp EEECSBCCCTTTSCCCTTC
T ss_pred EEEEECCEEEEEEECCCHH
T ss_conf 9996151576432085013
No 8
>1c5e_A Head decoration protein; bacteriophage lambda, head protein D, protein virus assembly, phage display, viral protein; 1.10A {Enterobacteria phage lambda} SCOP: b.85.2.1 PDB: 1tcz_A
Probab=3.92 E-value=81 Score=14.51 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=14.5
Q ss_pred HHHHHCCCCHHHHHHHHHH
Q ss_conf 9986120154441323202
Q gi|254781036|r 16 RYVKSGVFNLDSLLVDFSV 34 (65)
Q Consensus 16 ryvksgvfnldsllvdfsv 34 (65)
.|-|||.|+.+.+.---||
T Consensus 59 tyYKsGtF~~~av~WP~sV 77 (95)
T 1c5e_A 59 TFYKSGTFRYEDVLWPEAA 77 (95)
T ss_dssp EEECEEEECTTTSCCCTTC
T ss_pred EEEEECCEEEEEEECCHHH
T ss_conf 9997151576432085024
No 9
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=3.56 E-value=2.7e+02 Score=11.76 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=10.3
Q ss_pred HHHHHHHCCCCHHHH
Q ss_conf 653111104554651
Q gi|254781036|r 37 KEHFFDTYSIPWHSI 51 (65)
Q Consensus 37 kehffdtysipwhsi 51 (65)
-..|-.|.|-||---
T Consensus 4 vdffcetcskpwlvg 18 (26)
T 1loi_A 4 VDFFCETCSKPWLVG 18 (26)
T ss_dssp HHHHHHTSSCTTGGG
T ss_pred HHHHHHHCCCCHHHH
T ss_conf 888987369725444
No 10
>1j2g_A Uricase, urate oxidase; T-fold barrel, purine, oxidoreductase; HET: AZA; 2.20A {Bacillus SP} SCOP: d.96.1.4 d.96.1.4
Probab=3.33 E-value=2.9e+02 Score=11.64 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHCC-----------CCHHHHH
Q ss_conf 32320247653111104-----------5546512
Q gi|254781036|r 29 LVDFSVSLKEHFFDTYS-----------IPWHSIF 52 (65)
Q Consensus 29 lvdfsvslkehffdtys-----------ipwhsif 52 (65)
.-+|..-|-.||.++|+ .||..+.
T Consensus 92 ~E~Fa~~La~HFl~~Y~hV~~a~v~iee~pW~R~~ 126 (319)
T 1j2g_A 92 IEGFLEYVATSFLKKYSHIEKISLIGEEIPFETTF 126 (319)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEEE
T ss_conf 89999999998647588847999999997788898
Done!