RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781036|ref|YP_003065449.1| hypothetical protein
CLIBASIA_04690 [Candidatus Liberibacter asiaticus str. psy62]
         (65 letters)



>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage
           sensor, voltage dependent, ION channel, shaker, membrane
           protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
           2a79_B*
          Length = 514

 Score = 24.4 bits (52), Expect = 5.9
 Identities = 8/43 (18%), Positives = 20/43 (46%)

Query: 12  AVLSRYVKSGVFNLDSLLVDFSVSLKEHFFDTYSIPWHSIFYF 54
             L+++ ++ + +    +  F     E+FFD     + +I Y+
Sbjct: 68  KTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYY 110


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 563,012
Number of extensions: 18582
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 65
Length of database: 5,693,230
Length adjustment: 36
Effective length of query: 29
Effective length of database: 4,820,446
Effective search space: 139792934
Effective search space used: 139792934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)