RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781036|ref|YP_003065449.1| hypothetical protein CLIBASIA_04690 [Candidatus Liberibacter asiaticus str. psy62] (65 letters) >2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage sensor, voltage dependent, ION channel, shaker, membrane protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 2a79_B* Length = 514 Score = 24.4 bits (52), Expect = 5.9 Identities = 8/43 (18%), Positives = 20/43 (46%) Query: 12 AVLSRYVKSGVFNLDSLLVDFSVSLKEHFFDTYSIPWHSIFYF 54 L+++ ++ + + + F E+FFD + +I Y+ Sbjct: 68 KTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYY 110 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.139 0.442 Gapped Lambda K H 0.267 0.0651 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 563,012 Number of extensions: 18582 Number of successful extensions: 44 Number of sequences better than 10.0: 1 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 2 Length of query: 65 Length of database: 5,693,230 Length adjustment: 36 Effective length of query: 29 Effective length of database: 4,820,446 Effective search space: 139792934 Effective search space used: 139792934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.2 bits)