254781037
porphobilinogen deaminase
GeneID in NCBI database: | 8210060 | Locus tag: | CLIBASIA_04695 |
Protein GI in NCBI database: | 254781037 | Protein Accession: | YP_003065450.1 |
Gene range: | -(1040348, 1041271) | Protein Length: | 307aa |
Gene description: | porphobilinogen deaminase | ||
COG prediction: | [H] Porphobilinogen deaminase | ||
KEGG prediction: | hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61] | ||
SEED prediction: | Porphobilinogen deaminase (EC 2.5.1.61) | ||
Pathway involved in KEGG: | Porphyrin and chlorophyll metabolism [PATH:las00860] | ||
Subsystem involved in SEED: | Heme and Siroheme Biosynthesis; | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 307 | porphobilinogen deaminase [Candidatus Liberibacter asia | |||
315122376 | 307 | porphobilinogen deaminase [Candidatus Liberibacter sola | 1 | 1e-145 | |
325294021 | 309 | Porphobilinogen deaminase [Agrobacterium sp. H13-3] Len | 1 | 9e-98 | |
15889908 | 309 | porphobilinogen deaminase [Agrobacterium tumefaciens st | 1 | 2e-95 | |
190893753 | 309 | porphobilinogen deaminase [Rhizobium etli CIAT 652] Len | 1 | 8e-93 | |
86359485 | 309 | porphobilinogen deaminase [Rhizobium etli CFN 42] Lengt | 1 | 1e-92 | |
209551271 | 309 | porphobilinogen deaminase [Rhizobium leguminosarum bv. | 1 | 9e-92 | |
241206704 | 309 | porphobilinogen deaminase [Rhizobium leguminosarum bv. | 1 | 4e-91 | |
222150055 | 309 | porphobilinogen deaminase [Agrobacterium vitis S4] Leng | 1 | 5e-91 | |
116254224 | 309 | porphobilinogen deaminase [Rhizobium leguminosarum bv. | 1 | 2e-90 | |
222087476 | 322 | porphobilinogen deaminase [Agrobacterium radiobacter K8 | 1 | 2e-90 |
>gi|315122376|ref|YP_004062865.1| porphobilinogen deaminase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 307 | Back alignment and organism information |
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Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 243/307 (79%), Positives = 276/307 (89%) Query: 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGG 60 ME+K F+IGTR SPLALAHAFETRS LM VHKIP I ++PLSTKGDRITNRTLTEIGG Sbjct: 1 MEEKDFKIGTRRSPLALAHAFETRSYLMSVHKIPLEKIFVVPLSTKGDRITNRTLTEIGG 60 Query: 61 KGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKD 120 KGLFTEEIE+KLISGEID AVHSAKDMPTKLLKGL+ISAYLPRED+RDVFISHTAQSL D Sbjct: 61 KGLFTEEIERKLISGEIDFAVHSAKDMPTKLLKGLRISAYLPREDVRDVFISHTAQSLND 120 Query: 121 LALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLK 180 LA++S++GTSSLRRKALLLRWR+D+S+IDFRGKIETRL KL N +A A+LLAYAGIKRLK Sbjct: 121 LAVNSIVGTSSLRRKALLLRWRADLSIIDFRGKIETRLTKLKNKQADAMLLAYAGIKRLK 180 Query: 181 KEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAEL 240 KE V+KEILN+EDFPPSPGQGAICIETH+NN +A EL INH +TWD+V+CERAFLAEL Sbjct: 181 KESVVKEILNLEDFPPSPGQGAICIETHMNNTRAHELATAINHRETWDTVSCERAFLAEL 240 Query: 241 DGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFIS 300 DGSCKSAIAGF+YCKG +LYFYG +L DGKIFHEVS++GN CDAI IGRDA ++IR I+ Sbjct: 241 DGSCKSAIAGFSYCKGQSLYFYGTILTPDGKIFHEVSKSGNCCDAIQIGRDAGRHIRLIA 300 Query: 301 NKNVFNF 307 +K +FN Sbjct: 301 DKTIFNL 307 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|325294021|ref|YP_004279885.1| Porphobilinogen deaminase [Agrobacterium sp. H13-3] Length = 309 | Back alignment and organism information |
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>gi|15889908|ref|NP_355589.1| porphobilinogen deaminase [Agrobacterium tumefaciens str. C58] Length = 309 | Back alignment and organism information |
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>gi|190893753|ref|YP_001980295.1| porphobilinogen deaminase [Rhizobium etli CIAT 652] Length = 309 | Back alignment and organism information |
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>gi|86359485|ref|YP_471377.1| porphobilinogen deaminase [Rhizobium etli CFN 42] Length = 309 | Back alignment and organism information |
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>gi|209551271|ref|YP_002283188.1| porphobilinogen deaminase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 309 | Back alignment and organism information |
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>gi|241206704|ref|YP_002977800.1| porphobilinogen deaminase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 309 | Back alignment and organism information |
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>gi|222150055|ref|YP_002551012.1| porphobilinogen deaminase [Agrobacterium vitis S4] Length = 309 | Back alignment and organism information |
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>gi|116254224|ref|YP_770062.1| porphobilinogen deaminase [Rhizobium leguminosarum bv. viciae 3841] Length = 309 | Back alignment and organism information |
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>gi|222087476|ref|YP_002546013.1| porphobilinogen deaminase [Agrobacterium radiobacter K84] Length = 322 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 307 | porphobilinogen deaminase [Candidatus Liberibacter asia | ||
PRK00072 | 295 | PRK00072, hemC, porphobilinogen deaminase; Reviewed | 1e-104 | |
TIGR00212 | 292 | TIGR00212, hemC, porphobilinogen deaminase | 8e-84 | |
cd00494 | 292 | cd00494, HMBS, Hydroxymethylbilane synthase (HMBS), als | 1e-76 | |
PLN02691 | 351 | PLN02691, PLN02691, porphobilinogen deaminase | 2e-76 | |
KOG2892 | 320 | KOG2892, KOG2892, KOG2892, Porphobilinogen deaminase [C | 3e-59 | |
COG0181 | 307 | COG0181, HemC, Porphobilinogen deaminase [Coenzyme meta | 1e-88 | |
pfam01379 | 213 | pfam01379, Porphobil_deam, Porphobilinogen deaminase, d | 4e-61 | |
PRK01066 | 231 | PRK01066, PRK01066, porphobilinogen deaminase; Provisio | 7e-26 | |
pfam03900 | 74 | pfam03900, Porphobil_deamC, Porphobilinogen deaminase, | 3e-11 |
>gnl|CDD|178840 PRK00072, hemC, porphobilinogen deaminase; Reviewed | Back alignment and domain information |
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>gnl|CDD|161767 TIGR00212, hemC, porphobilinogen deaminase | Back alignment and domain information |
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>gnl|CDD|29604 cd00494, HMBS, Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12 | Back alignment and domain information |
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>gnl|CDD|178294 PLN02691, PLN02691, porphobilinogen deaminase | Back alignment and domain information |
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>gnl|CDD|38103 KOG2892, KOG2892, KOG2892, Porphobilinogen deaminase [Coenzyme transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|30530 COG0181, HemC, Porphobilinogen deaminase [Coenzyme metabolism] | Back alignment and domain information |
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>gnl|CDD|144826 pfam01379, Porphobil_deam, Porphobilinogen deaminase, dipyromethane cofactor binding domain | Back alignment and domain information |
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>gnl|CDD|167150 PRK01066, PRK01066, porphobilinogen deaminase; Provisional | Back alignment and domain information |
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>gnl|CDD|146500 pfam03900, Porphobil_deamC, Porphobilinogen deaminase, C-terminal domain | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 307 | porphobilinogen deaminase [Candidatus Liberibacter asia | ||
TIGR00212 | 312 | hemC porphobilinogen deaminase; InterPro: IPR000860 Tet | 100.0 | |
PRK00072 | 300 | hemC porphobilinogen deaminase; Reviewed | 100.0 | |
COG0181 | 307 | HemC Porphobilinogen deaminase [Coenzyme metabolism] | 100.0 | |
cd00494 | 292 | HMBS Hydroxymethylbilane synthase (HMBS), also known as | 100.0 | |
KOG2892 | 320 | consensus | 100.0 | |
pfam01379 | 213 | Porphobil_deam Porphobilinogen deaminase, dipyromethane | 100.0 | |
PRK01066 | 234 | porphobilinogen deaminase; Provisional | 100.0 | |
PRK09861 | 272 | cytoplasmic membrane lipoprotein-28; Provisional | 96.66 | |
PRK10797 | 302 | glutamate and aspartate transporter subunit; Provisiona | 96.33 | |
PRK11063 | 271 | metQ DL-methionine transporter substrate-binding subuni | 94.03 | |
pfam03180 | 236 | Lipoprotein_9 NLPA lipoprotein. This family of bacteria | 93.41 | |
COG1464 | 268 | NlpA ABC-type metal ion transport system, periplasmic c | 91.18 | |
pfam03900 | 74 | Porphobil_deamC Porphobilinogen deaminase, C-terminal d | 99.82 | |
PRK11260 | 264 | cystine transporter subunit; Provisional | 95.85 | |
PRK09959 | 1197 | hybrid sensory histidine kinase in two-component regula | 94.84 | |
cd00134 | 218 | PBPb Bacterial periplasmic transport systems use membra | 92.81 | |
pfam00497 | 224 | SBP_bac_3 Bacterial extracellular solute-binding protei | 92.37 | |
COG0834 | 275 | HisJ ABC-type amino acid transport/signal transduction | 92.27 | |
PRK10859 | 507 | putative transglycosylase; Provisional | 95.16 | |
pfam09084 | 216 | NMT1 NMT1/THI5 like. This family contains the NMT1 and | 94.43 |
>TIGR00212 hemC porphobilinogen deaminase; InterPro: IPR000860 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway | Back alignment and domain information |
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>PRK00072 hemC porphobilinogen deaminase; Reviewed | Back alignment and domain information |
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>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism] | Back alignment and domain information |
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>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12 | Back alignment and domain information |
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>KOG2892 consensus | Back alignment and domain information |
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>pfam01379 Porphobil_deam Porphobilinogen deaminase, dipyromethane cofactor binding domain | Back alignment and domain information |
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>PRK01066 porphobilinogen deaminase; Provisional | Back alignment and domain information |
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>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional | Back alignment and domain information |
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>PRK10797 glutamate and aspartate transporter subunit; Provisional | Back alignment and domain information |
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>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional | Back alignment and domain information |
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>pfam03180 Lipoprotein_9 NLPA lipoprotein | Back alignment and domain information |
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>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>pfam03900 Porphobil_deamC Porphobilinogen deaminase, C-terminal domain | Back alignment and domain information |
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>PRK11260 cystine transporter subunit; Provisional | Back alignment and domain information |
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>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
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>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions | Back alignment and domain information |
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>pfam00497 SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 | Back alignment and domain information |
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>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
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>PRK10859 putative transglycosylase; Provisional | Back alignment and domain information |
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>pfam09084 NMT1 NMT1/THI5 like | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 307 | porphobilinogen deaminase [Candidatus Liberibacter asia | ||
1pda_A | 313 | Structure Of Porphobilinogen Deaminase Reveals A Fl | 3e-75 | |
2ypn_A | 313 | Hydroxymethylbilane Synthase Length = 313 | 3e-75 | |
1ypn_A | 313 | Reduced Form Hydroxymethylbilane Synthase (K59q Mut | 1e-74 | |
1ah5_A | 313 | Reduced Form Selenomethionine-Labelled Hydroxymethy | 2e-73 | |
3ecr_A | 364 | Structure Of Human Porphobilinogen Deaminase Length | 1e-60 | |
3eq1_A | 361 | The Crystal Structure Of Human Porphobilinogen Deam | 6e-60 |
>gi|157833452|pdb|1PDA|A Chain A, Structure Of Porphobilinogen Deaminase Reveals A Flexible Multidomain Polymerase With A Single Catalytic Site Length = 313 | Back alignment and structure |
Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 166/305 (54%), Gaps = 2/305 (0%) Query: 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGG 60 M RI TR SPLAL A + LM H P + ++P+ T+GD I + L ++GG Sbjct: 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGG 58 Query: 61 KGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKD 120 KGLF +E+E L+ D AVHS KD+P + +GL + RED RD F+S+ SL Sbjct: 59 KGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDA 118 Query: 121 LALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLK 180 L S++GTSSLRR+ L R D+ + RG + TRL+KL+N + AI+LA AG+KRL Sbjct: 119 LPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLG 178 Query: 181 KEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAEL 240 E I+ L E P+ GQGA+ IE +++ + +EL+ +NH +T V ERA L Sbjct: 179 LESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRL 238 Query: 241 DGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFIS 300 +G+C+ I +A ++ G+V A DG R G DA +G A+ + Sbjct: 239 EGACQVPIGSYAELIDGEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNG 298 Query: 301 NKNVF 305 + + Sbjct: 299 AREIL 303 |
gi|4388845|pdb|2YPN|A Chain A, Hydroxymethylbilane Synthase Length = 313 | Back alignment and structure |
>gi|157834325|pdb|1YPN|A Chain A, Reduced Form Hydroxymethylbilane Synthase (K59q Mutant) Crystal Structure After 2 Hours In A Flow Cell Determined By Time-Resolved Laue Diffraction Length = 313 | Back alignment and structure |
>gi|157829875|pdb|1AH5|A Chain A, Reduced Form Selenomethionine-Labelled Hydroxymethylbilane Synthase Determined By Mad Length = 313 | Back alignment and structure |
>gi|208435725|pdb|3ECR|A Chain A, Structure Of Human Porphobilinogen Deaminase Length = 364 | Back alignment and structure |
>gi|224510663|pdb|3EQ1|A Chain A, The Crystal Structure Of Human Porphobilinogen Deaminase At 2.8a Resolution Length = 361 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 307 | porphobilinogen deaminase [Candidatus Liberibacter asia | ||
1gtk_A | 313 | Porphobilinogen deaminase; lyase, biosynthesis of linea | 3e-73 | |
3ecr_A | 364 | Porphobilinogen deaminase; heme biosynthesis, porphobil | 6e-52 |
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Length = 313 | Back alignment and structure |
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Score = 270 bits (691), Expect = 3e-73 Identities = 113/297 (38%), Positives = 162/297 (54%), Gaps = 2/297 (0%) Query: 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGG 60 M RI TR SPLAL A + LM H P + ++P+ T+GD I + L ++GG Sbjct: 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGG 58 Query: 61 KGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKD 120 KGLF +E+E L+ D AVHS KD+P + +GL + RED RD F+S+ SL Sbjct: 59 KGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDA 118 Query: 121 LALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLK 180 L S++GTSSLRR+ L R D+ + RG + TRL+KL+N + AI+LA AG+KRL Sbjct: 119 LPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLG 178 Query: 181 KEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAEL 240 E I+ L E P+ GQGA+ IE +++ + +EL+ +NH +T V ERA L Sbjct: 179 LESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRL 238 Query: 241 DGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIR 297 +G C+ I +A ++ +V A DG R G DA +G A+ + Sbjct: 239 EGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELL 295 |
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* Length = 364 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 307 | porphobilinogen deaminase [Candidatus Liberibacter asia | ||
1gtk_A | 313 | Porphobilinogen deaminase; lyase, biosynthesis of linea | 100.0 | |
3ecr_A | 364 | Porphobilinogen deaminase; heme biosynthesis, porphobil | 100.0 | |
3gxa_A | 275 | Outer membrane lipoprotein GNA1946; periplasmic, L-meth | 98.0 | |
1p99_A | 295 | Hypothetical protein PG110; structural genomics, PSI, p | 97.96 | |
3ir1_A | 245 | Outer membrane lipoprotein GNA1946; D-methionine cultur | 97.92 | |
3k2d_A | 237 | ABC-type metal ION transport system, periplasmic; alpha | 97.62 | |
1xs5_A | 241 | 29 kDa protein, membrane lipoprotein TPN32; periplasmic | 97.49 | |
3del_B | 242 | Arginine binding protein; alpha and beta protein (A/B), | 94.64 | |
2vha_A | 287 | Periplasmic binding transport protein; periplasmic bind | 93.72 | |
3hv1_A | 268 | Polar amino acid ABC uptake transporter substrate bindi | 92.86 | |
2ozz_A | 231 | Hypothetical protein YHFZ; alpha-beta structure, struct | 97.4 | |
2x26_A | 308 | Periplasmic aliphatic sulphonates-binding protein; tran | 97.03 | |
1wdn_A | 226 | GLNBP, glutamine binding protein; closed form, complex, | 94.81 | |
3g41_A | 246 | Amino acid ABC transporter, periplasmic amino acid-bind | 93.23 | |
3hn0_A | 283 | Nitrate transport protein; YP_001302749.1, structural g | 96.28 | |
2pyy_A | 228 | Ionotropic glutamate receptor bacterial homologue; GLUR | 90.83 | |
3ksx_A | 324 | Nitrate transport protein; SSUA, alkanesulfonate-bindin | 90.71 | |
2a5s_A | 284 | N-methyl-D-aspartate receptor nmdar2A subunit, NMDA rec | 95.77 | |
2iee_A | 271 | ORF2, probable ABC transporter extracellular-binding pr | 94.32 | |
3h7m_A | 234 | Sensor protein; histidine kinase sensor domain, kinase, | 91.93 | |
3ix1_A | 302 | N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine prote | 91.13 | |
2v25_A | 259 | Major cell-binding factor; antigen, adhesin, aspartate, | 93.95 | |
1xt8_A | 292 | Putative amino-acid transporter periplasmic solute-bind | 93.05 | |
3mpk_A | 267 | Virulence sensor protein BVGS; venus flytrap, sensor do | 92.9 | |
2czl_A | 272 | Hypothetical protein TTHA1568; conserved hypothetical p | 91.87 |
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* | Back alignment and structure |
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Probab=100.00 E-value=0 Score=776.72 Aligned_cols=304 Identities=37% Similarity=0.566 Sum_probs=300.1 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 99882899707988889999999999997408998338999997327411587556748622699999999870983699 Q gi|254781037|r 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA 80 (307) Q Consensus 1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA 80 (307) |++|+||||||+|+||+|||++|+++|++.+ |++++||++|+|+||+++++||+++||||+||||||++|++|+|||| T Consensus 1 mm~~~IrIgtR~S~LAl~Qa~~v~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~l~~~ggkg~F~kele~aLl~g~iDiA 78 (313) T 1gtk_A 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIA 78 (313) T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHHHHHHC--TTCEEEEEECC-----------------CTTHHHHHHHHHTTSCSEE T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCCHHHCCCCEEEHHHHHHHHHCCCCCEE T ss_conf 9988669995884999999999999999758--99729999996348434687477728863017999999863876489 Q ss_pred EECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHH Q ss_conf 74034321110122101222365683105665243243324567322047530288899842377310330767999998 Q gi|254781037|r 81 VHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNK 160 (307) Q Consensus 81 VHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~K 160 (307) ||||||||+++|+||.|+||++|+|||||||+++++++.+||+|++|||||+||++|++++|||++|++|||||+|||+| T Consensus 79 VHSlKDlP~~~~~gl~i~av~~R~d~rD~li~~~~~~l~~lp~g~~IGTsS~RR~aql~~~~pdl~i~~iRGNVdTRl~K 158 (313) T 1gtk_A 79 VHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSK 158 (313) T ss_dssp EEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHH T ss_pred EEECCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHH T ss_conf 75136577546998569999567888887503763556248998988318888999999868999377564769999999 Q ss_pred HHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 63787655630145454216211222336866735854320789998527612455677623978888878899999871 Q gi|254781037|r 161 LNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAEL 240 (307) Q Consensus 161 l~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L 240 (307) |++|+|||||||+|||+|||+.+.++++|++++|+|||||||||||||++|.++.++++.|||++|+.|+.+||+||+.| T Consensus 159 L~~g~~DaiILA~AGl~RLgl~~~~~~~l~~~~~~PA~gQGaiave~r~~d~~~~~~l~~in~~~t~~~~~aER~fL~~L 238 (313) T 1gtk_A 159 LDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRL 238 (313) T ss_dssp HHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCCHHHHHHHHHHHHHHHHH T ss_pred HHCCCCCEEEEECCHHCCCCCCCCCEEECCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 76789778986400121012113304861602046641001256655178588999998744578999999999999985 Q ss_pred CCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCC Q ss_conf 776488528999999998999999986998789999984398889999999999999706056337 Q gi|254781037|r 241 DGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFISNKNVFN 306 (307) Q Consensus 241 ~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~~g~k~iLn 306 (307) +|||++|||+||++++++++|+|+|+|+||++.+..+.+|+.++++++|+++|++|+++||+++|+ T Consensus 239 ~ggC~sPIga~A~~~~~~l~l~~~v~s~DG~~~i~~~~~g~~~~a~~lG~~la~~Ll~~Ga~ell~ 304 (313) T 1gtk_A 239 EGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILA 304 (313) T ss_dssp TCCTTSCEEEEEEEETTEEEEEEEEECTTSSCEEEEEEEECGGGHHHHHHHHHHHHHHTTHHHHHH T ss_pred CCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCHHHHHH T ss_conf 899998649999998999999999998899789999998478999999999999999848999999 |
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* | Back alignment and structure |
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>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis} | Back alignment and structure |
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>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1 | Back alignment and structure |
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>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis} | Back alignment and structure |
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>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus} | Back alignment and structure |
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>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 | Back alignment and structure |
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>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis} | Back alignment and structure |
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>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* | Back alignment and structure |
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>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} | Back alignment and structure |
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>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 | Back alignment and structure |
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>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} | Back alignment and structure |
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>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A | Back alignment and structure |
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>3hn0_A Nitrate transport protein; YP_001302749.1, structural genomics, joint center for structural genomics, JCSG; 1.75A {Parabacteroides distasonis} | Back alignment and structure |
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>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme pcc 73102} | Back alignment and structure |
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>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* | Back alignment and structure |
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>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* | Back alignment and structure |
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>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} | Back alignment and structure |
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>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} | Back alignment and structure |
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>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} | Back alignment and structure |
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>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} | Back alignment and structure |
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>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 | Back alignment and structure |
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>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A | Back alignment and structure |
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>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
307 | porphobilinogen deaminase [Candidatus Liberibacter asia | |||
d1pdaa1 | 217 | c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxyme | 8e-43 | |
d1pdaa2 | 88 | d.50.2.1 (A:220-307) Porphobilinogen deaminase (hydroxy | 4e-15 |
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain species: Escherichia coli [TaxId: 562] Score = 167 bits (425), Expect = 8e-43 Identities = 90/218 (41%), Positives = 129/218 (59%), Gaps = 2/218 (0%) Query: 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGL 63 RI TR SPLAL A + LM H P + ++P+ T+GD I + L ++GGKGL Sbjct: 2 NVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGL 59 Query: 64 FTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLAL 123 F +E+E L+ D AVHS KD+P + +GL + RED RD F+S+ SL L Sbjct: 60 FVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPA 119 Query: 124 HSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEK 183 S++GTSSLRR+ L R D+ + RG + TRL+KL+N + AI+LA AG+KRL E Sbjct: 120 GSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLES 179 Query: 184 VIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVI 221 I+ L E P+ GQGA+ IE +++ + +EL+ + Sbjct: 180 RIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAAL 217 |
>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 88 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 307 | porphobilinogen deaminase [Candidatus Liberibacter asia | ||
d1pdaa1 | 217 | Porphobilinogen deaminase (hydroxymethylbilane synthase | 100.0 | |
d1p99a_ | 255 | Putative lipoprotein (NlpA family) {Staphylococcus aure | 97.44 | |
d1pdaa2 | 88 | Porphobilinogen deaminase (hydroxymethylbilane synthase | 99.89 | |
d1xs5a_ | 240 | Putative lipoprotein (NlpA family) {Treponema pallidum | 97.89 | |
d2ozza1 | 228 | Hypothetical protein YhfZ {Shigella flexneri [TaxId: 62 | 97.13 | |
d1xt8a1 | 248 | Putative amino-acid transporter CjaA {Campylobacter jej | 94.74 | |
d2czla1 | 270 | Hypothetical protein TTHA1568 {Thermus thermophilus [Ta | 93.39 |
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=0 Score=580.54 Aligned_cols=217 Identities=41% Similarity=0.643 Sum_probs=212.7 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 88289970798888999999999999740899833899999732741158755674862269999999987098369974 Q gi|254781037|r 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH 82 (307) Q Consensus 3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH 82 (307) +|.||||||+|+||+|||++|.+.|++.+ |++++||++|+|+||++++.||+++||||+||+|||++|++|++||||| T Consensus 1 ~~~IrIgtR~S~LAl~Qa~~v~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~l~~~ggkg~Ftkele~~Ll~~~iDiAVH 78 (217) T d1pdaa1 1 DNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVH 78 (217) T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHHC--TTCEEEEEECCCHHHHC---------CCCTTTHHHHHHHHTTSCSEEEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHH T ss_conf 98479996885999999999999999858--9981899998625876230344342016799999999997076435035 Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHH Q ss_conf 03432111012210122236568310566524324332456732204753028889984237731033076799999863 Q gi|254781037|r 83 SAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLN 162 (307) Q Consensus 83 SlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~ 162 (307) ||||||+++|++|.|+|+++|+||||+||+++++++++||+|++|||||+||++|++++||+++|++|||||+|||+||. T Consensus 79 S~KDlP~~~~~~l~i~a~~~R~d~rD~li~~~~~~l~~l~~~~~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~ 158 (217) T d1pdaa1 79 SMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD 158 (217) T ss_dssp EGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSTTTSCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHHHH T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHCCCCCEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHH T ss_conf 33144532577651213335677300100467477736789998234651179999876888754664142343888856 Q ss_pred CCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHH Q ss_conf 78765563014545421621122233686673585432078999852761245567762 Q gi|254781037|r 163 NNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVI 221 (307) Q Consensus 163 ~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~I 221 (307) +|+|||+|||+|||+||++.++++++|++++|+||||||+||||||++|.++.+++++| T Consensus 159 ~g~~DaiILA~AGL~RL~l~~~i~~~l~~~~~~PA~gQGaiaIe~r~~d~~~~~il~~i 217 (217) T d1pdaa1 159 NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAAL 217 (217) T ss_dssp TTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGG T ss_pred CCCCCEEEEEHHHHHHCCCCHHEEEECCHHHCCCHHHHHHEEEEECCCCHHHHHHHHCC T ss_conf 56867899555678654733301577585544794865054889817999999998549 |
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} | Back information, alignment and structure |
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>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
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>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
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>d2czla1 c.94.1.1 (A:3-272) Hypothetical protein TTHA1568 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 307 | porphobilinogen deaminase [Candidatus Liberibacter | ||
1gtk_A_1-103_194-219 | 129 | (A:1-103,A:194-219) Porphobilinogen deaminase; lya | 4e-32 | |
3ecr_A_1-120_217-241 | 145 | (A:1-120,A:217-241) Porphobilinogen deaminase; hem | 2e-29 | |
1gtk_A_104-193 | 90 | (A:104-193) Porphobilinogen deaminase; lyase, bios | 1e-23 | |
3ecr_A_121-216 | 96 | (A:121-216) Porphobilinogen deaminase; heme biosyn | 1e-21 | |
1gtk_A_220-313 | 94 | (A:220-313) Porphobilinogen deaminase; lyase, bios | 8e-17 | |
3ecr_A_242-364 | 123 | (A:242-364) Porphobilinogen deaminase; heme biosyn | 9e-16 |
>1gtk_A (A:1-103,A:194-219) Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli}Length = 129 | Back alignment and structure |
---|
Score = 132 bits (335), Expect = 4e-32 Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 2/105 (1%) Query: 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGG 60 M RI TR SPLAL A + LM H P + ++P+ T+GD I + L ++GG Sbjct: 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGG 58 Query: 61 KGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPRED 105 KGLF +E+E L+ D AVHS KD+P + +GL + RED Sbjct: 59 KGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICERED 103 |
>3ecr_A (A:1-120,A:217-241) Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*Length = 145 | Back alignment and structure |
---|
>1gtk_A (A:104-193) Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli}Length = 90 | Back alignment and structure |
---|
>3ecr_A (A:121-216) Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*Length = 96 | Back alignment and structure |
---|
>1gtk_A (A:220-313) Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli}Length = 94 | Back alignment and structure |
---|
>3ecr_A (A:242-364) Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*Length = 123 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 307 | porphobilinogen deaminase [Candidatus Liberibacter asia | ||
1gtk_A_1-103_194-219 | 129 | Porphobilinogen deaminase; lyase, biosynthesis of | 100.0 | |
3ecr_A_1-120_217-241 | 145 | Porphobilinogen deaminase; heme biosynthesis, porp | 100.0 | |
1gtk_A_104-193 | 90 | Porphobilinogen deaminase; lyase, biosynthesis of | 100.0 | |
3ecr_A_121-216 | 96 | Porphobilinogen deaminase; heme biosynthesis, porp | 100.0 | |
1gtk_A_220-313 | 94 | Porphobilinogen deaminase; lyase, biosynthesis of | 99.88 | |
3ecr_A_242-364 | 123 | Porphobilinogen deaminase; heme biosynthesis, porp | 99.85 |
>1gtk_A (A:1-103,A:194-219) Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} | Back alignment and structure |
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Probab=100.00 E-value=7e-43 Score=297.53 Aligned_cols=104 Identities=41% Similarity=0.653 Sum_probs=102.3 Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 99882899707988889999999999997408998338999997327411587556748622699999999870983699 Q gi|254781037|r 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA 80 (307) Q Consensus 1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA 80 (307) |++++|+||||+|+||++||++|++.|++.| |++++||++|+|+||+++++||+++||||+||||||++|++|++|+| T Consensus 1 Mm~~~i~IGTR~S~LAl~Qt~~V~~~L~~~~--P~~~~eiv~i~T~GD~~~~~~L~~~ggKGlFtkELe~aLl~g~iDiA 78 (129) T 1gtk_A 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIA 78 (129) T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHHHHHHC--TTCEEEEEECC-----------------CTTHHHHHHHHHTTSCSEE T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCCHHHCCCCEEEHHHHHHHHHCCCCCEE T ss_conf 9988679996885999999999999999758--99718999996327434687577738862543899999871877689 Q ss_pred EECCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 74034321110122101222365683 Q gi|254781037|r 81 VHSAKDMPTKLLKGLQISAYLPREDI 106 (307) Q Consensus 81 VHSlKDlP~~~~~~l~i~a~~~R~d~ 106 (307) ||||||||+.+|+||.|+|+++|+|| T Consensus 79 VHSlKDlPt~l~~gl~iaAv~~ReD~ 104 (129) T 1gtk_A 79 VHSMKDVPVEFPQGLGLVTICEREDP 104 (129) T ss_dssp EEEGGGSCSCCCTTEEEEEECCCCCC T ss_pred EEECCCCCCHHCCCCEEEECCCCCCC T ss_conf 84035477221188158502556775 |
>3ecr_A (A:1-120,A:217-241) Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* | Back alignment and structure |
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>1gtk_A (A:104-193) Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} | Back alignment and structure |
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>3ecr_A (A:121-216) Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* | Back alignment and structure |
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>1gtk_A (A:220-313) Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} | Back alignment and structure |
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>3ecr_A (A:242-364) Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* | Back alignment and structure |
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