HHsearch alignment for GI: 254781037 and conserved domain: cd00494
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.
Probab=100.00 E-value=0 Score=760.65 Aligned_cols=291 Identities=44% Similarity=0.625 Sum_probs=286.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 89970798888999999999999740899833899999732741158755674862269999999987098369974034
Q gi|254781037|r 6 FRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAK 85 (307)
Q Consensus 6 i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlK 85 (307)
T Consensus 1 IrIgTR~S~LAl~Qa~~V~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~L~~~ggkG~Ftkele~aLl~g~iDiAVHSlK 78 (292)
T cd00494 1 IRIGTRKSKLALIQTNKVIEKLKELC--PGIEVEIVIIKTTGDKILDKPLAKIGGKGLFTKELEEALLNGEIDLAVHSLK 78 (292)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCHHHCCCCCEEHHHHHHHHHCCCCCEEEEECC
T ss_conf 98993798999999999999999758--9981899999665731367638774996144799999997098787986046
Q ss_pred CCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCC
Q ss_conf 32111012210122236568310566524324332456732204753028889984237731033076799999863787
Q gi|254781037|r 86 DMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNK 165 (307)
Q Consensus 86 DlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~ 165 (307)
T Consensus 79 DlPt~~~~gl~i~avl~R~dprDvlv~~~~~~l~~lp~ga~IGTSS~RR~aql~~~~pdl~i~~iRGNV~TRl~KL~~g~ 158 (292)
T cd00494 79 DVPTELPEGLVLGAIPKREDPRDALVSRNGSSLEDLPAGSVVGTSSLRRQAQLKRKRPDLKFEPLRGNVDTRLRKLDEGE 158 (292)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCHHHCCCCHHHHCCCCCCEEEECCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCC
T ss_conf 57774798746876634788222444064002212898987851474379999986899954676588999999851678
Q ss_pred CCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 65563014545421621122233686673585432078999852761245567762397888887889999987177648
Q gi|254781037|r 166 AHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCK 245 (307)
Q Consensus 166 ~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~ 245 (307)
T Consensus 159 ~DaiILA~AGL~RLgl~~~i~~~l~~~~~~PA~gQGaiave~r~~d~~~~~~l~~in~~~t~~~~~aER~~l~~l~ggC~ 238 (292)
T cd00494 159 YDAIILAAAGLKRLGLEDRITQYLSPEVMLPAVGQGALAIECRKGDEELLALLKPLNHEETALCVLAERAFLRELEGGCQ 238 (292)
T ss_pred CCEEEEHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 74775446567554784202300363107887665306888724898888888775587889999999999998489999
Q ss_pred CCEEEEEEEECC-EEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 852899999999-89999999869987899999843988899999999999997
Q gi|254781037|r 246 SAIAGFAYCKGS-TLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRF 298 (307)
Q Consensus 246 ~PIGa~A~i~~~-~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~ 298 (307)
T Consensus 239 ~Piga~a~i~~~~~l~l~~~v~s~DG~~~~~~~~~g~~~~a~~lG~~lA~~Lla 292 (292)
T cd00494 239 VPIGVYAELDGGEELKLKGLVGSPDGKRLIEGEVRGNIEDAEELGKKLAEELLA 292 (292)
T ss_pred CCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 845889999699879999999988898799999997789999999999999719