Query         gi|254781037|ref|YP_003065450.1| porphobilinogen deaminase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 307
No_of_seqs    169 out of 2086
Neff          5.8 
Searched_HMMs 39220
Date          Mon May 30 04:29:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781037.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00212 hemC porphobilinogen 100.0       0       0  814.4  24.8  294    6-300     1-312 (312)
  2 PRK00072 hemC porphobilinogen  100.0       0       0  774.7  30.5  299    1-302     1-300 (300)
  3 COG0181 HemC Porphobilinogen d 100.0       0       0  774.4  28.0  301    4-306     2-303 (307)
  4 cd00494 HMBS Hydroxymethylbila 100.0       0       0  760.6  29.8  291    6-298     1-292 (292)
  5 KOG2892 consensus              100.0       0       0  613.1  16.9  304    1-306     3-313 (320)
  6 pfam01379 Porphobil_deam Porph 100.0       0       0  581.9  16.6  213    5-219     1-213 (213)
  7 PRK01066 porphobilinogen deami 100.0       0       0  580.9  17.2  219    1-226    16-234 (234)
  8 pfam03900 Porphobil_deamC Porp  99.8 7.7E-20   2E-24  148.8  10.6   74  227-300     1-74  (74)
  9 PRK09861 cytoplasmic membrane   96.7   0.064 1.6E-06   32.8  12.6  195    3-228    31-258 (272)
 10 PRK10797 glutamate and asparta  96.3     0.1 2.6E-06   31.5  13.4  184    3-219    39-250 (302)
 11 PRK11260 cystine transporter s  95.9    0.11 2.8E-06   31.2   9.1  145   66-218    88-237 (264)
 12 PRK10859 putative transglycosy  95.2     0.3 7.6E-06   28.5  11.0  146    3-173    42-204 (507)
 13 PRK09959 hybrid sensory histid  94.8    0.36 9.2E-06   27.9  10.2  147   66-220   352-501 (1197)
 14 pfam09084 NMT1 NMT1/THI5 like.  94.4     0.3 7.7E-06   28.4   7.7  121   34-174    19-149 (216)
 15 PRK11063 metQ DL-methionine tr  94.0    0.26 6.7E-06   28.8   6.8  199    3-230    30-259 (271)
 16 pfam03180 Lipoprotein_9 NLPA l  93.4    0.31   8E-06   28.3   6.3  193    6-230     1-224 (236)
 17 cd00134 PBPb Bacterial peripla  92.8    0.85 2.2E-05   25.5   9.9  147   67-224    49-200 (218)
 18 pfam00497 SBP_bac_3 Bacterial   92.4    0.84 2.1E-05   25.5   7.2  144   66-224    48-204 (224)
 19 COG0834 HisJ ABC-type amino ac  92.3       1 2.5E-05   25.1   7.5  153   66-227    87-248 (275)
 20 COG1464 NlpA ABC-type metal io  91.2    0.94 2.4E-05   25.2   6.4  196    4-231    29-257 (268)
 21 PRK11553 alkanesulfonate trans  89.3     1.9 4.8E-05   23.3   7.5  149    4-179    27-190 (314)
 22 PRK11480 tauA taurine transpor  88.8       2 5.2E-05   23.0   9.4  196    4-233    23-240 (320)
 23 smart00062 PBPb Bacterial peri  88.3     2.2 5.5E-05   22.9   9.7  142   66-218    49-198 (219)
 24 PRK11917 bifunctional adhesin/  88.0     2.3 5.8E-05   22.7  10.6  142   65-219    90-240 (259)
 25 COG0715 TauA ABC-type nitrate/  86.1     2.9 7.4E-05   22.1   8.6  158   68-228    74-250 (335)
 26 CHL00180 rbcR LysR transcripti  85.2     3.2 8.1E-05   21.8  10.9  178    4-212    95-287 (307)
 27 PRK09495 glnH glutamine ABC tr  84.6     3.4 8.7E-05   21.6   9.1  146    3-175    24-182 (247)
 28 pfam04069 OpuAC Substrate bind  83.6     3.8 9.6E-05   21.3   5.8  188    4-222     1-226 (256)
 29 TIGR03431 PhnD phosphonate ABC  81.6     4.4 0.00011   20.9   8.7  154    4-180    27-203 (288)
 30 PRK04694 Maf-like protein; Rev  78.4    0.79   2E-05   25.7   0.8  114  126-263     3-120 (190)
 31 PRK12684 transcriptional regul  78.1     5.7 0.00015   20.1   6.3  133   65-211   131-278 (313)
 32 PRK12683 transcriptional regul  74.5     7.1 0.00018   19.5   6.7  136   65-211   131-278 (308)
 33 pfam03466 LysR_substrate LysR   71.3     8.5 0.00022   19.0  12.8  175    3-211     5-191 (209)
 34 PRK00078 Maf-like protein; Rev  68.6     2.6 6.5E-05   22.4   1.4   29  126-156     4-32  (192)
 35 PRK02676 consensus              64.0     4.1 0.00011   21.1   1.7   34  123-158     3-36  (196)
 36 PRK12679 cbl transcriptional r  61.7      13 0.00033   17.8   5.9  161   64-237   130-305 (316)
 37 PRK04425 Maf-like protein; Rev  61.6     4.9 0.00013   20.6   1.7   31  123-155     5-35  (196)
 38 pfam05023 Phytochelatin Phytoc  61.6     2.5 6.3E-05   22.5   0.2   66  197-262   102-171 (208)
 39 TIGR00060 L18_bact ribosomal p  61.3     7.1 0.00018   19.6   2.5   45  260-304    35-91  (118)
 40 TIGR01027 proB glutamate 5-kin  60.7     3.9   1E-04   21.2   1.1  129  124-288   207-351 (379)
 41 PRK12681 cysB transcriptional   59.8      14 0.00036   17.6   6.5  188    5-228    94-298 (324)
 42 PRK02478 Maf-like protein; Rev  58.2     6.1 0.00015   20.0   1.7   26  234-259    96-121 (199)
 43 PRK09508 leuO leucine transcri  57.8      15 0.00039   17.4   9.2   58    4-84    112-169 (314)
 44 PRK00238 consensus              57.1     5.3 0.00013   20.4   1.3   24  126-149     5-28  (198)
 45 PRK04719 consensus              56.9     5.6 0.00014   20.2   1.4   26  234-259    92-117 (188)
 46 PRK01946 consensus              56.6     6.2 0.00016   19.9   1.6   26  125-150    11-36  (195)
 47 PRK00234 Maf-like protein; Rev  56.6     5.7 0.00015   20.1   1.4  107  125-256     4-111 (192)
 48 PRK00648 Maf-like protein; Rev  56.3     6.1 0.00016   19.9   1.5  114  125-260     5-118 (191)
 49 PRK03797 consensus              55.9     3.9  0.0001   21.2   0.4  109  126-260     3-111 (186)
 50 PRK03442 consensus              55.9     5.8 0.00015   20.1   1.3   25  125-149     4-28  (213)
 51 PRK00884 Maf-like protein; Rev  54.9     6.3 0.00016   19.9   1.4   31  125-157     4-34  (194)
 52 cd00555 Maf Nucleotide binding  54.6     6.1 0.00016   20.0   1.2  110  126-258     2-111 (180)
 53 pfam02642 consensus             54.4      17 0.00044   17.0   7.4  100   65-171    37-140 (259)
 54 TIGR03427 ABC_peri_uca ABC tra  53.7      18 0.00045   17.0   7.4  166    4-195     2-183 (328)
 55 PRK00148 Maf-like protein; Rev  53.6     6.5 0.00017   19.8   1.3   32  125-158     4-35  (195)
 56 PRK03415 consensus              52.2     7.5 0.00019   19.4   1.4   27  234-260    90-116 (197)
 57 PRK02141 Maf-like protein; Rev  51.3     9.1 0.00023   18.8   1.7   33  122-156     8-40  (206)
 58 PRK04056 Maf-like protein; Rev  50.7     8.3 0.00021   19.1   1.4  114  126-262     3-116 (180)
 59 PRK00032 Maf-like protein; Rev  50.0     8.3 0.00021   19.1   1.3   25  235-259    91-115 (189)
 60 PRK12682 transcriptional regul  49.9      20 0.00052   16.6   4.7  134   65-211   131-278 (309)
 61 PRK11233 nitrogen assimilation  49.5      21 0.00052   16.6  11.7  134    5-170    92-238 (305)
 62 cd00985 Maf_Ham1 Maf_Ham1. Maf  49.4     7.2 0.00018   19.5   0.9  108  126-257     2-109 (131)
 63 COG0424 Maf Nucleotide-binding  48.8      11 0.00027   18.4   1.8  107  124-258     4-115 (193)
 64 KOG2098 consensus               48.5     9.9 0.00025   18.6   1.5   16   14-29      8-23  (591)
 65 pfam02545 Maf Maf-like protein  47.4     9.8 0.00025   18.6   1.4   27  234-260    91-117 (193)
 66 PRK03411 consensus              46.8      10 0.00026   18.5   1.4   25  125-149     4-28  (194)
 67 PRK01839 Maf-like protein; Rev  44.2      12  0.0003   18.1   1.4   32  123-156    10-41  (209)
 68 PRK04222 consensus              43.8      12  0.0003   18.1   1.3   30  125-156     5-34  (191)
 69 PRK10263 DNA translocase FtsK;  41.6      19 0.00049   16.8   2.1   38  142-179  1184-1224(1355)
 70 PRK01526 Maf-like protein; Rev  41.3      17 0.00043   17.1   1.8   23  118-142     5-27  (205)
 71 PRK05593 rplR 50S ribosomal pr  38.9      30 0.00076   15.5   5.7   45  260-304    36-88  (115)
 72 PRK03098 consensus              37.3      15 0.00037   17.5   1.0  111  126-260     1-111 (185)
 73 PRK11716 DNA-binding transcrip  35.5      34 0.00086   15.2  10.0  169    5-211    68-253 (269)
 74 PRK01441 Maf-like protein; Rev  34.3      21 0.00053   16.5   1.4   23  234-256    99-121 (207)
 75 COG0263 ProB Glutamate 5-kinas  33.9      13 0.00034   17.7   0.3  135  123-294   207-347 (369)
 76 PRK09791 putative DNA-binding   33.4      36 0.00093   14.9  12.3  176    4-211    95-280 (302)
 77 TIGR02114 coaB_strep phosphopa  33.0      37 0.00094   14.9   5.1   50   35-84     40-91  (253)
 78 TIGR01382 PfpI intracellular p  32.4     8.2 0.00021   19.1  -1.0   20  153-172    64-83  (189)
 79 KOG0605 consensus               31.7      39 0.00099   14.8   4.0   76  193-270   144-226 (550)
 80 TIGR01915 npdG NADPH-dependent  31.1      40   0.001   14.7   3.5   29    2-30     30-58  (233)
 81 TIGR00742 yjbN TIM-barrel prot  30.4      21 0.00054   16.5   0.9  119  117-240    51-178 (326)
 82 PRK12680 transcriptional regul  30.2      41   0.001   14.6   6.6  175    5-218    94-284 (327)
 83 COG3265 GntK Gluconate kinase   30.1      35  0.0009   15.0   2.0   42  123-164    68-111 (161)
 84 TIGR00172 maf septum formation  29.7      34 0.00086   15.1   1.8   20  123-142     3-22  (212)
 85 pfam10080 DUF2318 Predicted me  28.7      23 0.00058   16.3   0.8   29  234-263    61-92  (102)
 86 TIGR00422 valS valyl-tRNA synt  26.8      47  0.0012   14.2   3.0  105   52-161   232-359 (970)
 87 TIGR01313 therm_gnt_kin carboh  26.4      48  0.0012   14.2   2.5   44  124-167    79-130 (175)
 88 PRK09986 DNA-binding transcrip  25.6      49  0.0013   14.1  15.6  170    4-211    81-264 (278)
 89 COG3043 NapB Nitrate reductase  25.1      16  0.0004   17.3  -0.6   82   75-160    68-152 (155)
 90 pfam02621 DUF178 Putative peri  24.3      52  0.0013   13.9   4.7  101   65-176    34-143 (248)
 91 PRK05429 gamma-glutamyl kinase  23.9      51  0.0013   14.0   1.8  129  123-289   209-344 (372)
 92 PRK05331 putative glycerol-3-p  23.8      33 0.00084   15.2   0.9   38  128-170   189-226 (317)
 93 CHL00139 rpl18 ribosomal prote  23.7      53  0.0014   13.9   5.3   63  238-304     7-82  (109)
 94 pfam04261 Dyp_perox Dyp-type p  23.4      54  0.0014   13.8   3.7   57  214-270   187-255 (311)
 95 pfam07302 AroM AroM protein. T  22.9      55  0.0014   13.8   2.0  112   65-209    16-134 (221)
 96 PRK11545 gntK gluconate kinase  21.9      58  0.0015   13.6   2.9   90  121-223    79-173 (177)
 97 cd03575 NTR_WFIKKN NTR domain,  21.8      52  0.0013   13.9   1.6   25  117-141    82-106 (109)
 98 COG3572 GshA Gamma-glutamylcys  21.7      46  0.0012   14.3   1.3   34  174-208    63-96  (456)
 99 PRK07765 para-aminobenzoate sy  21.5      45  0.0011   14.3   1.2   25   62-86     10-34  (221)
100 TIGR03414 ABC_choline_bnd chol  21.2      60  0.0015   13.5   7.3   62    2-89      6-67  (290)
101 COG1732 OpuBC Periplasmic glyc  21.1      60  0.0015   13.5   5.8  201    3-233    32-281 (300)
102 KOG4134 consensus               20.7      61  0.0016   13.5   1.9   65  149-214    50-123 (253)

No 1  
>TIGR00212 hemC porphobilinogen deaminase; InterPro: IPR000860   Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin .   The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA.   The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III.   Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) .   This entry represents hydroxymethylbilane synthase (or porphobilinogen deaminase, 2.5.1.61 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain . The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis , . A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) . ; GO: 0004418 hydroxymethylbilane synthase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=100.00  E-value=0  Score=814.43  Aligned_cols=294  Identities=46%  Similarity=0.673  Sum_probs=286.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCC-HHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             8997079888899999999999974089983389999973274115875-567486226999999998709836997403
Q gi|254781037|r    6 FRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRT-LTEIGGKGLFTEEIEKKLISGEIDCAVHSA   84 (307)
Q Consensus         6 i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~-l~~~g~kg~Ftkele~aLl~g~iDiAVHSl   84 (307)
                      ||||||+|+||||||++|.+.|+++|+ |.+++||++|+|+||+++++| |+++||||+||||||+|||+|+||||||||
T Consensus         1 l~IGTRgS~LAl~Qa~~V~~~l~~~~~-p~~~~ei~~~kT~GD~~~~~~~L~~~GgKGlFtKEle~aLL~geiD~AVHSl   79 (312)
T TIGR00212         1 LRIGTRGSKLALAQANLVKEQLKEVYP-PELDTEIVIIKTTGDKIQDKPLLSDIGGKGLFTKELEQALLDGEIDLAVHSL   79 (312)
T ss_pred             CEEECCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf             978404868999999999999997369-7402179999804861116100021375036688999996259844888430


Q ss_pred             CCCCCCC-CCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHC
Q ss_conf             4321110-122101222365683105665243243324567322047530288899842377310330767999998637
Q gi|254781037|r   85 KDMPTKL-LKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNN  163 (307)
Q Consensus        85 KDlP~~~-~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~  163 (307)
                      ||||+.+ |+||.|+||++|+|||||||++++.+|.+||+||+|||||+||++||+.+||||+++++||||+|||+||++
T Consensus        80 KD~P~~~~~~gL~~~a~~~RedP~D~l~s~~~~~l~~LP~GA~vGTSS~RR~aql~~~RPDl~~~~lRGNi~TRl~Kl~~  159 (312)
T TIGR00212        80 KDVPTVLSPEGLEIAAVLKREDPRDVLVSRKYLSLEELPQGAKVGTSSLRRKAQLKALRPDLEIEPLRGNIDTRLRKLDE  159 (312)
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCC
T ss_conf             23576559888278635587886426886278885127798889745799999998308994499746987999998518


Q ss_pred             -CCCCEEEEEHHHHHHCCCC-CCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf             -8765563014545421621-12223368667358543207899985276124556776239788888788999998717
Q gi|254781037|r  164 -NKAHAILLAYAGIKRLKKE-KVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELD  241 (307)
Q Consensus       164 -g~~DaiilA~Agl~RL~l~-~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~  241 (307)
                       |+|||||||+|||+|||+. +.++++|+++.|+|||||||||||||+||.++.++++.|||++|+.|+.|||+||+.|+
T Consensus       160 Gg~~DAiiLA~AGL~RLg~~~~~i~~~~~~~~~~PA~GQG~i~ve~R~dD~~~~~il~~i~h~~t~~~~~aER~fL~~L~  239 (312)
T TIGR00212       160 GGEYDAIILAAAGLKRLGLENDVITEVLDPEVMLPAVGQGAIAVECRKDDTEIKEILKEINHEETAVEVTAERAFLKELD  239 (312)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf             88204899988875302541013431478114178866757999984587799998620288889999999999998728


Q ss_pred             CCCCCCEEEEEEEECC-----EEEEEEEEECCCCC---EEEEEEEECCHH----HHHHHH--HHHHHHHHHHC
Q ss_conf             7648852899999999-----89999999869987---899999843988----899999--99999999706
Q gi|254781037|r  242 GSCKSAIAGFAYCKGS-----TLYFYGIVLASDGK---IFHEVSRNGNRC----DAINIG--RDAAQYIRFIS  300 (307)
Q Consensus       242 GgC~~PIGa~A~i~~~-----~l~l~a~v~s~DG~---~~i~~~~~g~~~----~a~~LG--~~la~~Ll~~g  300 (307)
                      |||++||||||+++++     +|+|+|+|+++||+   ..++.+..++.+    +++++|  .++|+++++++
T Consensus       240 GgC~~Pig~~a~~~~~~~~t~~l~l~a~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~A~~~~~~~  312 (312)
T TIGR00212       240 GGCQTPIGAYAEYEGDDNDTDKLKLKAVVLSLDGKIVREVIRAEKEGNIENKKEDAEELGNPLEVAEELLKRG  312 (312)
T ss_pred             CCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCHHHHHCCHHHCCCHHHHHHHHHHHC
T ss_conf             8964331468898337788427999999971787164001001320313444105765067889999999719


No 2  
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=100.00  E-value=0  Score=774.73  Aligned_cols=299  Identities=43%  Similarity=0.655  Sum_probs=293.0

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             99882899707988889999999999997408998338999997327411587556748622699999999870983699
Q gi|254781037|r    1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA   80 (307)
Q Consensus         1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA   80 (307)
                      |+ ++||||||+|+||+|||++|+++|++.+  |++++||++|+|+||+++++||+++||||+||||||++|++|+||||
T Consensus         1 M~-~~irIgtR~S~LAl~Qa~~V~~~L~~~~--p~~~~ei~~i~T~GD~~~~~pL~~iGgkG~Ftkele~aLl~g~iDiA   77 (300)
T PRK00072          1 MM-RKLRIGTRGSKLALWQAEWVKDRLKAAH--PGLEVELVPIKTKGDRILDVPLAKIGGKGLFVKELEEALLDGEIDIA   77 (300)
T ss_pred             CC-CCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCCHHHCCCCEEEHHHHHHHHHHCCCCEE
T ss_conf             99-7669997898999999999999999758--99718999996467445687578828950358999999982875525


Q ss_pred             EECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHH
Q ss_conf             74034321110122101222365683105665243243324567322047530288899842377310330767999998
Q gi|254781037|r   81 VHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNK  160 (307)
Q Consensus        81 VHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~K  160 (307)
                      ||||||||+++|+||.|+||++|+|||||||+++++++++||+|++|||||+||++||+++|||++|+++||||+|||+|
T Consensus        78 VHSlKDlPt~~~~~l~i~avl~R~d~rDvLv~~~~~~l~~Lp~ga~IGTSS~RR~aql~~~~pdl~~~~iRGNv~TRl~K  157 (300)
T PRK00072         78 VHSLKDVPTELPEGLVLAAIPEREDPRDAFVSNDYASLDDLPEGAVVGTSSLRRQAQLLALRPDLEIKDLRGNVDTRLRK  157 (300)
T ss_pred             EEECCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHH
T ss_conf             54134578758988558765547886785301466751338999888504650899999867999567766888999999


Q ss_pred             HHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             63787655630145454216211222336866735854320789998527612455677623978888878899999871
Q gi|254781037|r  161 LNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAEL  240 (307)
Q Consensus       161 l~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L  240 (307)
                      |++|+|||+|||+|||+|||+.++++++|++++|+|||||||||||||++|.++.+++++|||++|+.|+.+||+||+.|
T Consensus       158 l~~g~~DaiiLA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaiave~r~~d~~~~~~l~~in~~~t~~~~~aER~~L~~L  237 (300)
T PRK00072        158 LDEGEYDAIILAAAGLKRLGLEDRITELLDPDEMLPAVGQGALGIECRADDEEILELLAPLNHAETRLCVTAERAFLRAL  237 (300)
T ss_pred             HHCCCCCEEEHHHHHHHHCCCCCCEEEEECHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf             75678645420676786657854216985533357854630389999449988887766508988999999999999863


Q ss_pred             CCCCCCCEEEEEEEECC-EEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             77648852899999999-899999998699878999998439888999999999999970605
Q gi|254781037|r  241 DGSCKSAIAGFAYCKGS-TLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFISNK  302 (307)
Q Consensus       241 ~GgC~~PIGa~A~i~~~-~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~~g~k  302 (307)
                      +|||++|||+||+++++ +++|+|+|+|+||+++++.+.+|+.+++.++|.++|++|+++||+
T Consensus       238 ~ggC~~PIg~~a~~~~~~~l~l~~~v~s~dG~~~i~~~~~g~~~~a~~lG~~la~~Ll~~Gak  300 (300)
T PRK00072        238 EGGCQVPIGAYAEIEGDDELHLRGLVGSPDGSRIIREERIGNGADAEALGIELAEELLAQGAR  300 (300)
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999998448899998898699999999899987999999857999999999999999975799


No 3  
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=100.00  E-value=0  Score=774.42  Aligned_cols=301  Identities=43%  Similarity=0.652  Sum_probs=295.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r    4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS   83 (307)
Q Consensus         4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS   83 (307)
                      ++||||||+|+||+|||++|+++|++.+  |+++|||++|+|+||+++++||+++||||+||||||++|++|+||+||||
T Consensus         2 ~~irIgTR~S~LAl~Qa~~V~~~L~~~~--p~~~~ei~~i~T~GD~i~d~pL~~iGgkGlFtkEle~all~g~~DiAVHS   79 (307)
T COG0181           2 MKLRIGTRGSKLALAQANEVIERLKAAY--PDLEVEIVTIKTKGDRILDKPLSKIGGKGLFTKELEQALLEGEIDIAVHS   79 (307)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCHHCCCHHHHCCCCEEEHHHHHHHHHCCCCCEEEEE
T ss_conf             7358851787889999999999999868--99538999985145142013488848818779999999976997789760


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHC
Q ss_conf             34321110122101222365683105665243243324567322047530288899842377310330767999998637
Q gi|254781037|r   84 AKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNN  163 (307)
Q Consensus        84 lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~  163 (307)
                      |||||+++|++|.++||++|+||||+||++++.+|.+||+||+|||||+||+||++++|||++|+++||||||||+||.+
T Consensus        80 lKDvP~~~p~gL~laai~~R~dprDalVs~~~~~l~~LP~Ga~VGTSSlRR~aql~~~rPdl~i~~lRGNVdTRL~KL~~  159 (307)
T COG0181          80 LKDVPTELPEGLVLAAIPEREDPRDALVSRDGYDLEELPEGAVVGTSSLRRQAQLKALRPDLKIEPLRGNVDTRLRKLDE  159 (307)
T ss_pred             CCCCCCCCCCCCEEEEECCCCCHHHEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHC
T ss_conf             44487568999369996178995366888788856348998831452687999999869997699665768889998616


Q ss_pred             CCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             87655630145454216211222336866735854320789998527612455677623978888878899999871776
Q gi|254781037|r  164 NKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGS  243 (307)
Q Consensus       164 g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~Gg  243 (307)
                      |+|||||||+|||+|||+.++++++|++++|+|||||||||||||++|.++.++++.|||.+|+.|+.|||+|++.|+||
T Consensus       160 g~yDAIILA~AGL~RLgl~~~~~~~l~p~~~~PA~gQGal~ie~R~~d~~~~~ll~~i~~~~t~~~v~aERa~l~~L~gg  239 (307)
T COG0181         160 GEYDAIILAAAGLKRLGLENRITEILDPEEFLPAPGQGALAIECRAGDEKVLELLAELNDEDTRICVTAERAFLRELEGG  239 (307)
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCEEECCHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             78529999999998628742220634754268988886699999639678999998615820889999999999962899


Q ss_pred             CCCCEEEEEEEECC-EEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCC
Q ss_conf             48852899999999-8999999986998789999984398889999999999999706056337
Q gi|254781037|r  244 CKSAIAGFAYCKGS-TLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFISNKNVFN  306 (307)
Q Consensus       244 C~~PIGa~A~i~~~-~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~~g~k~iLn  306 (307)
                      |++|||+||.++++ +|+|+|.|+++||++.++.+..|+.+++.++|+++|++++++|++++|+
T Consensus       240 C~~PIg~~a~~~~~~~l~l~~~v~~~DG~~~~~~~~~g~~~~a~~lG~~~a~~l~~~ga~e~l~  303 (307)
T COG0181         240 CQVPIGAYAELTGGGELRLRALVGSPDGSQIIKAEIRGDAEDAEELGKELAEELLEKGAKEILE  303 (307)
T ss_pred             CCCCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8771288899858973999999988887635788730656669999999999999987899987


No 4  
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12.  HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB).  HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II.  HMBS is found in all organisms except viruses.
Probab=100.00  E-value=0  Score=760.65  Aligned_cols=291  Identities=44%  Similarity=0.625  Sum_probs=286.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             89970798888999999999999740899833899999732741158755674862269999999987098369974034
Q gi|254781037|r    6 FRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAK   85 (307)
Q Consensus         6 i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlK   85 (307)
                      ||||||+|+||+|||++|+++|++.+  |++++||++|+|+||+++++||+++||||+||||||++|++|++||||||||
T Consensus         1 IrIgTR~S~LAl~Qa~~V~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~L~~~ggkG~Ftkele~aLl~g~iDiAVHSlK   78 (292)
T cd00494           1 IRIGTRKSKLALIQTNKVIEKLKELC--PGIEVEIVIIKTTGDKILDKPLAKIGGKGLFTKELEEALLNGEIDLAVHSLK   78 (292)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCHHHCCCCCEEHHHHHHHHHCCCCCEEEEECC
T ss_conf             98993798999999999999999758--9981899999665731367638774996144799999997098787986046


Q ss_pred             CCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCC
Q ss_conf             32111012210122236568310566524324332456732204753028889984237731033076799999863787
Q gi|254781037|r   86 DMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNK  165 (307)
Q Consensus        86 DlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~  165 (307)
                      |||+++|+||.|+|+++|+|||||||+++++++++||+|++|||||+||++||+++|||++|++|||||+|||+||++|+
T Consensus        79 DlPt~~~~gl~i~avl~R~dprDvlv~~~~~~l~~lp~ga~IGTSS~RR~aql~~~~pdl~i~~iRGNV~TRl~KL~~g~  158 (292)
T cd00494          79 DVPTELPEGLVLGAIPKREDPRDALVSRNGSSLEDLPAGSVVGTSSLRRQAQLKRKRPDLKFEPLRGNVDTRLRKLDEGE  158 (292)
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCHHHCCCCHHHHCCCCCCEEEECCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCC
T ss_conf             57774798746876634788222444064002212898987851474379999986899954676588999999851678


Q ss_pred             CCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             65563014545421621122233686673585432078999852761245567762397888887889999987177648
Q gi|254781037|r  166 AHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCK  245 (307)
Q Consensus       166 ~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~  245 (307)
                      |||||||+|||+|||+.++++++|++++|+|||||||||||||++|.++.+++++|||++|+.|+.+||+||+.|+|||+
T Consensus       159 ~DaiILA~AGL~RLgl~~~i~~~l~~~~~~PA~gQGaiave~r~~d~~~~~~l~~in~~~t~~~~~aER~~l~~l~ggC~  238 (292)
T cd00494         159 YDAIILAAAGLKRLGLEDRITQYLSPEVMLPAVGQGALAIECRKGDEELLALLKPLNHEETALCVLAERAFLRELEGGCQ  238 (292)
T ss_pred             CCEEEEHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             74775446567554784202300363107887665306888724898888888775587889999999999998489999


Q ss_pred             CCEEEEEEEECC-EEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             852899999999-89999999869987899999843988899999999999997
Q gi|254781037|r  246 SAIAGFAYCKGS-TLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRF  298 (307)
Q Consensus       246 ~PIGa~A~i~~~-~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~  298 (307)
                      +||||||+++++ +++|+|+|+|+||+++++.+.+|+.+++.++|.++|++|++
T Consensus       239 ~Piga~a~i~~~~~l~l~~~v~s~DG~~~~~~~~~g~~~~a~~lG~~lA~~Lla  292 (292)
T cd00494         239 VPIGVYAELDGGEELKLKGLVGSPDGKRLIEGEVRGNIEDAEELGKKLAEELLA  292 (292)
T ss_pred             CCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_conf             845889999699879999999988898799999997789999999999999719


No 5  
>KOG2892 consensus
Probab=100.00  E-value=0  Score=613.06  Aligned_cols=304  Identities=39%  Similarity=0.564  Sum_probs=288.6

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             99882899707988889999999999997408998338999997327411587556748622699999999870983699
Q gi|254781037|r    1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA   80 (307)
Q Consensus         1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA   80 (307)
                      |+.+.|+||||+|+||++|+++|.+.|++.|  |+++|+|..++|+||+++++||++||+|++||||||++|.+|.+||+
T Consensus         3 ~~~~~irIGtRKSkLAvIQs~~v~~~Lek~Y--P~l~f~I~t~~T~GDkIl~k~L~~ig~KsLfTkELE~aL~~~~~div   80 (320)
T KOG2892           3 PRTAVIRIGTRKSKLAVIQSYHVREKLEKKY--PELAFEIITMSTTGDKILSKPLAKIGGKSLFTKELEDALINGHVDIV   80 (320)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHHHCHHHHHCCCCHHHHHHHHHHHCCCCCEE
T ss_conf             8654897147666101230799999998659--88635799831433677614476626541007889999853985289


Q ss_pred             EECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC---CCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHH
Q ss_conf             7403432111012210122236568310566524---3243324567322047530288899842377310330767999
Q gi|254781037|r   81 VHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT---AQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETR  157 (307)
Q Consensus        81 VHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~---~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TR  157 (307)
                      |||||||||.+|+|+.|+|++||+||+|+||.+.   |+++.+||+|++|||||+||+||+++.||+|.|.++|||++||
T Consensus        81 VHSLKDlPT~LP~G~~ig~i~kRedp~DalV~~~~s~~kTladLP~GsVVGTSSlRR~Aql~RkyPHL~f~~~rgn~~tr  160 (320)
T KOG2892          81 VHSLKDLPTYLPEGMIIGCILKREDPRDALVFLTYSAYKTLADLPAGSVVGTSSLRRKAQILRKYPHLHVESIRGNLQTR  160 (320)
T ss_pred             EEECCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCHHHCCCCCEECHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf             87512363218997375032577786531787144332558668998631418876899987548961899834708777


Q ss_pred             HHHHHCCC-CCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             99863787-65563014545421621122233686673585432078999852761245567762397888887889999
Q gi|254781037|r  158 LNKLNNNK-AHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAF  236 (307)
Q Consensus       158 l~Kl~~g~-~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~f  236 (307)
                      ++||+.+. |-+||||.|||.|+++.+++.+.|.+++|+||+||||++|+||++|..+..++..+||.+|..|+.+||+|
T Consensus       161 l~kld~~~~~~~iilA~agl~rmg~~~ri~qil~p~~~~~avgqgalgie~r~~d~~m~~~l~~l~~~~t~~~~~~eraf  240 (320)
T KOG2892         161 LSKLDGGKPFQAIILALAGLKRMGWTNRIAQILHPDEMLYAVGQGALGIECRADDDKMLTYLASLNDLNTTLRILAERAF  240 (320)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             77625898402389988889874167677776185889987435306788705817799999873183778999999999


Q ss_pred             HHHHCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHHH--HH-HHHHHHHHHHHCCHHHCC
Q ss_conf             98717764885289999999989999999869987899999843988899--99-999999999706056337
Q gi|254781037|r  237 LAELDGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAI--NI-GRDAAQYIRFISNKNVFN  306 (307)
Q Consensus       237 L~~L~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g~~~~a~--~L-G~~la~~Ll~~g~k~iLn  306 (307)
                      ++.|+|||++||++|+..+++++.|+|.|+|.||++.+..+..+.+.+..  .. |+++++.|...+++.+++
T Consensus       241 lrtl~Ggcs~piav~s~~~~g~l~L~g~v~s~dg~~~i~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~~~  313 (320)
T KOG2892         241 LRTLEGGCSVPIAVYSSKKEGNLILTGLVWSLDGTKVIETSRKGPIVYEKMVKMGGKEAGQQLLSRTAPGIFG  313 (320)
T ss_pred             HHHHCCCCCCCEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCCC
T ss_conf             9860798667335675225775799854764665267887762234555443221454238888524578888


No 6  
>pfam01379 Porphobil_deam Porphobilinogen deaminase, dipyromethane cofactor binding domain.
Probab=100.00  E-value=0  Score=581.94  Aligned_cols=213  Identities=46%  Similarity=0.673  Sum_probs=209.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r    5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA   84 (307)
Q Consensus         5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl   84 (307)
                      +|+||||+|+||+|||++|.++|++.  +|++++|+++|+|+||++++.||+++||||+||||||++|++|+||||||||
T Consensus         1 tIrIgtR~S~LAl~Qa~~v~~~L~~~--~p~~~~ei~~i~T~GD~~~~~~l~~~ggkG~Ftkele~aLl~~~iDiAVHS~   78 (213)
T pfam01379         1 TIRIGTRKSKLALIQTNHVIEKLKEL--CPDIEVEIVIIKTTGDKILDKPLAKIGGKGLFTKELEEALLNGEIDLAVHSL   78 (213)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHH--CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCEEEEEC
T ss_conf             96999589999999999999999986--8998689999978784436665311698414269999999709878787604


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCC
Q ss_conf             43211101221012223656831056652432433245673220475302888998423773103307679999986378
Q gi|254781037|r   85 KDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNN  164 (307)
Q Consensus        85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g  164 (307)
                      ||||+++++||.|+||++|+|||||||+++++++.+||+|++|||||+||++|++++|||++++++||||+|||+||++|
T Consensus        79 KDlP~~~~~~l~i~avl~R~d~rD~Li~~~~~~l~~lp~ga~IGTSS~RR~aql~~~~pdl~~~~iRGNV~TRl~KL~~g  158 (213)
T pfam01379        79 KDVPTELPEGLVLGAIPKREDPRDALVSRNGKSLEDLPEGSVVGTSSLRRSAQLKRKRPDLKFEPLRGNVDTRLRKLDEG  158 (213)
T ss_pred             CCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCHHHCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCC
T ss_conf             65776479874687664478866644302676665677676553253779999998689984677668889999997578


Q ss_pred             CCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf             7655630145454216211222336866735854320789998527612455677
Q gi|254781037|r  165 KAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVK  219 (307)
Q Consensus       165 ~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~  219 (307)
                      +|||+|||+|||+|||+.++++++|++++|+|||||||||||||++|.++.++++
T Consensus       159 ~~DaiiLA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaie~r~~d~~i~~llk  213 (213)
T pfam01379       159 EYDAIILAAAGLKRLGLEDRITQSLPPEDMLPAVGQGALAIECRKGDEEILALLK  213 (213)
T ss_pred             CCCEEEEHHHHHHHCCCCCCCCEECCHHHCCCHHHHHHEEEEEECCCHHHHHHHC
T ss_conf             9879863676786668731140671877648837430369988169899999749


No 7  
>PRK01066 porphobilinogen deaminase; Provisional
Probab=100.00  E-value=0  Score=580.87  Aligned_cols=219  Identities=32%  Similarity=0.403  Sum_probs=212.1

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             99882899707988889999999999997408998338999997327411587556748622699999999870983699
Q gi|254781037|r    1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA   80 (307)
Q Consensus         1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA   80 (307)
                      |++|+||||||+|+||+|||++|.++|++.+  |++++||++|+|+||+++++||+++||||+||||||++|++|+||+|
T Consensus        16 ~~kk~IrIGTR~S~LAl~Qa~~V~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~L~~iggkG~Ftkele~aLl~g~iDiA   93 (234)
T PRK01066         16 LGKRPLRIASRKSPLAKAQVHECLRLLRSFF--PKLWFQISTTTTQGDLDQKTPLHLVENTGFFTDDVDFLVLSGKCDLA   93 (234)
T ss_pred             HCCCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCCHHHCCCCCEEHHHHHHHHHCCCCCEE
T ss_conf             0688469995887999999999999999768--99739999996337314577687748974548999999976987789


Q ss_pred             EECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHH
Q ss_conf             74034321110122101222365683105665243243324567322047530288899842377310330767999998
Q gi|254781037|r   81 VHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNK  160 (307)
Q Consensus        81 VHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~K  160 (307)
                      ||||||||+  |+|+.|+|+++|+|||||||++++.++.+||+|++|||||+||++||+++|||++|+++||||+|||+|
T Consensus        94 VHSlKDlP~--~~~l~i~av~~R~d~rDvLv~~~~~~l~~lp~~a~IGTSS~RR~aql~~~~pdl~i~~iRGNI~TRl~K  171 (234)
T PRK01066         94 IHSAKDLPE--PPKLTVVAITAGLDPSDLLVYAEKYLLQPLPKRPRIGSSSLRREELLKLLFPSGIILDIRGTIEERLKL  171 (234)
T ss_pred             EEECCCCCC--CCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHH
T ss_conf             871578899--999768999657898888760467641228866877316661999999878999789640899999998


Q ss_pred             HHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHH
Q ss_conf             637876556301454542162112223368667358543207899985276124556776239788
Q gi|254781037|r  161 LNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDT  226 (307)
Q Consensus       161 l~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T  226 (307)
                      |.+|+|||||||+|||+|||+...+++++++   +++|||||||||||++|.++.+++++|||.++
T Consensus       172 l~~g~~DaiILA~AGL~RLgl~~~~~~~lp~---~~~pgQGalaIe~R~dD~~~~~ll~~ln~~e~  234 (234)
T PRK01066        172 LERGKYDAIVVAKAAVLRLGLRLPYTIELPP---PYHPLQGRLAITAKKHIAKWKTLFLPLNITEN  234 (234)
T ss_pred             HCCCCCCEEEHHHHHHHHCCCCCCCEEECCC---CCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf             6178989533898999875897754585589---88788682889980797999999997378798


No 8  
>pfam03900 Porphobil_deamC Porphobilinogen deaminase, C-terminal domain.
Probab=99.82  E-value=7.7e-20  Score=148.79  Aligned_cols=74  Identities=32%  Similarity=0.464  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHC
Q ss_conf             88878899999871776488528999999998999999986998789999984398889999999999999706
Q gi|254781037|r  227 WDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFIS  300 (307)
Q Consensus       227 ~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~~g  300 (307)
                      ++||.|||+||+.|+|||++|||+||++++++|+|+++|+|+||+++++.+.+++.+++.+||+++|++|+++|
T Consensus         1 alcv~AER~fl~~L~GgC~~PIga~A~i~~~~i~l~~~v~s~DG~~~~~~~~~g~~~~a~~lG~~lA~~Ll~~G   74 (74)
T pfam03900         1 ALCVLAERAFLRELEGGCQVPIGAYAVLKDGNLRLKGLVGSPDGTRVFEIEVRGDIEDAEELGKKLAEELLAQG   74 (74)
T ss_pred             CEEHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCC
T ss_conf             95649899999986899998519999998999999999998989889999999858999999999999999683


No 9  
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=96.66  E-value=0.064  Score=32.78  Aligned_cols=195  Identities=11%  Similarity=0.119  Sum_probs=104.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE-
Q ss_conf             8828997079888899999999999974089983389999973274115875567486226999999998709836997-
Q gi|254781037|r    3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV-   81 (307)
Q Consensus         3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV-   81 (307)
                      .++|+||+-..+-+-+- +.+...+++-   .++++|++.+.   |-.+                -..||-+|+||.-. 
T Consensus        31 ~k~ikVG~~~~p~~~i~-e~~~~~~~ek---~G~~leiv~Fs---Dy~~----------------PN~AL~~G~iDaN~f   87 (272)
T PRK09861         31 AKHIKVGVINGAEQDVA-EVAKKVAKEK---YGLDVELVGFS---GSLL----------------PNDATNHGELDANVF   87 (272)
T ss_pred             CCEEEEEECCCCHHHHH-HHHHHHHHHH---CCCEEEEEEEC---CCCC----------------HHHHHHCCCCCCHHH
T ss_conf             97389996789869999-9999888761---79768999946---8622----------------628976798360245


Q ss_pred             -EC--CCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCC----CHHHHHHHH------HC-----
Q ss_conf             -40--3432111012210122236568310566524324332456732204753----028889984------23-----
Q gi|254781037|r   82 -HS--AKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSL----RRKALLLRW------RS-----  143 (307)
Q Consensus        82 -HS--lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~----RR~aql~~~------~p-----  143 (307)
                       |-  |+..-  -..|..+.++-+-.-.-=.+-|++++++++||.|++|+-++-    -|.-.++..      .|     
T Consensus        88 QH~pyL~~~n--~~~g~~L~~v~~~~~~P~glYS~K~ksl~dlp~Ga~IaIPnDpsN~~RAL~lL~~aGLI~Lk~~~~~~  165 (272)
T PRK09861         88 QHRPFLEQDN--QAHGYKLVAVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLL  165 (272)
T ss_pred             HHHHHHHHHH--HHCCCCEEEEEEEEEEEEEECCCCCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCC
T ss_conf             5799999999--98699579973167830140344659875847999898047812699999999988978977999977


Q ss_pred             -----------CCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC---
Q ss_conf             -----------773103307679999986378765563014545421621122233686673585432078999852---
Q gi|254781037|r  144 -----------DISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV---  209 (307)
Q Consensus       144 -----------~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~---  209 (307)
                                 +++|+++...--  -+-|++.++|+.|.-..=...-|+...-...+-.+.  .  .+=+..|.+|+   
T Consensus       166 ~t~~DI~~NPk~lk~~e~~aaql--~rsl~Dp~vD~avin~n~a~~agl~p~~dal~~E~~--~--~py~niiavr~~~~  239 (272)
T PRK09861        166 PTALDITDNPRHLQIMELEGAQL--PRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDK--N--SPYVNILVAREDNK  239 (272)
T ss_pred             CCHHHHHCCCCCCEEEECCHHHH--HHHHCCCCCCEEEECHHHHHHCCCCCCCCCEEECCC--C--CCEEEEEEECCCCC
T ss_conf             77445760887767998267774--675057761689976057988777944002036689--9--98379999827676


Q ss_pred             CCCHHHHHHHHHCCHHHHH
Q ss_conf             7612455677623978888
Q gi|254781037|r  210 NNPKAQELVKVINHEDTWD  228 (307)
Q Consensus       210 ~d~~i~~il~~Ind~~T~~  228 (307)
                      +|+.+..+.+....++...
T Consensus       240 d~~~ik~lv~a~~S~evk~  258 (272)
T PRK09861        240 NAENVKEFLQSYQSPEVAK  258 (272)
T ss_pred             CCHHHHHHHHHHCCHHHHH
T ss_conf             9989999999977999999


No 10 
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=96.33  E-value=0.1  Score=31.47  Aligned_cols=184  Identities=18%  Similarity=0.206  Sum_probs=96.8

Q ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHH
Q ss_conf             8828997079888--------------89999999999997408998338999997327411587556748622699999
Q gi|254781037|r    3 KKPFRIGTRCSPL--------------ALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEI   68 (307)
Q Consensus         3 ~~~i~IgtR~S~L--------------Al~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkel   68 (307)
                      +.+|+||++.+-=              ..=-++.+++.|...-+.|+++++++++.+                    ..+
T Consensus        39 ~G~l~vG~~~~~pPf~~~d~~g~~vGfdvDla~~ia~~l~~~l~~~~~~v~~v~~~~--------------------~~r   98 (302)
T PRK10797         39 NGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITS--------------------QNR   98 (302)
T ss_pred             CCEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCH--------------------HHH
T ss_conf             998999989998997168999985154179999999999877446773499997578--------------------887


Q ss_pred             HHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC--CCCCCCCCCCEE----ECCCCCHHHHHH---
Q ss_conf             99987098369974034321110122101222365683105665243--243324567322----047530288899---
Q gi|254781037|r   69 EKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA--QSLKDLALHSVI----GTSSLRRKALLL---  139 (307)
Q Consensus        69 e~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~--~~l~~lp~~a~I----GTsS~RR~aql~---  139 (307)
                      -.+|.+|++|++++++=.-|. ..+...++ .+.=...--++|.++.  +++.||. |-+|    ||++-   ..+.   
T Consensus        99 ip~L~~gk~Di~~~~~t~T~e-R~k~vdFS-~pY~~~~~~llv~k~s~Iks~~DL~-GK~V~V~~GTt~e---~~~~~~~  172 (302)
T PRK10797         99 IPLLQNGTFDFECGSTTNNLE-RQKQAAFS-DTIFVVGTRLLTKKGGDIKDFADLK-GKAVVVTSGTTSE---VLLNKLN  172 (302)
T ss_pred             HHHHHCCCCCEEEECCCCCHH-HHCCEEEC-CCCEECCEEEEEECCCCCCCHHHHC-CCEEEEECCCHHH---HHHHHHH
T ss_conf             799978980889735756977-74124214-6627714689997788666756608-9979996787399---9999866


Q ss_pred             -HHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHH---H-HHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHH
Q ss_conf             -84237731033076799999863787655630145---4-542162112223368667358543207899985276124
Q gi|254781037|r  140 -RWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYA---G-IKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKA  214 (307)
Q Consensus       140 -~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~A---g-l~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i  214 (307)
                       ...++.+++....+ .+-+..|.+|+.||.+.-.+   | ..+-.-.+ ..+.+.     ....+--+||-.|++|++.
T Consensus       173 ~~~~~~~~iv~~~~~-~~a~~~L~~GrvDA~~~D~~~l~~~~~~~~~~~-~~~iv~-----~~~~~e~ygia~rKgd~~L  245 (302)
T PRK10797        173 EEQKMNMRIISAKDH-GDSFRTLESGRAVAFMMDDALLAGERAKAKKPD-NWEIVG-----KPQSQEAYGCMLRKDDPQF  245 (302)
T ss_pred             HHHCCCCEEEECCCH-HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC-CEEEEC-----CCCCCCCEEEEEECCCHHH
T ss_conf             750677237850888-999999985995099812298889998636997-549937-----8677760799996899999


Q ss_pred             HHHHH
Q ss_conf             55677
Q gi|254781037|r  215 QELVK  219 (307)
Q Consensus       215 ~~il~  219 (307)
                      ++.+.
T Consensus       246 ~~~Vn  250 (302)
T PRK10797        246 KKLMD  250 (302)
T ss_pred             HHHHH
T ss_conf             99999


No 11 
>PRK11260 cystine transporter subunit; Provisional
Probab=95.85  E-value=0.11  Score=31.21  Aligned_cols=145  Identities=14%  Similarity=0.092  Sum_probs=76.6

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC----CCCCCCCCCCCEEECCCCCH-HHHHHH
Q ss_conf             9999998709836997403432111012210122236568310566524----32433245673220475302-888998
Q gi|254781037|r   66 EEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT----AQSLKDLALHSVIGTSSLRR-KALLLR  140 (307)
Q Consensus        66 kele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~----~~~l~~lp~~a~IGTsS~RR-~aql~~  140 (307)
                      .++-.+|.+|++|++++++---|. ....+.+. .+.-...--+++.++    ..+++||. |.+||+..--- ..+++.
T Consensus        88 ~~~i~~L~~g~~Di~~~~~t~T~e-R~~~~~Fs-~PY~~~~~~~~v~~~~~~~i~~~~dL~-Gk~V~v~~gs~~~~~l~~  164 (264)
T PRK11260         88 DGMLASLDSKRIDVVINQVTISDE-RKKKYDFS-TPYTVSGIQALVKKGNEGTIKTAADLK-GKKVGVGLGTNYEEWLRQ  164 (264)
T ss_pred             HHHHHHHHCCCCCEEECCCCCCHH-HHHHCCCC-CCEEEEEEEEEEECCCCCCCCCHHHHC-CCEEEEECCCHHHHHHHH
T ss_conf             999999866994667257535888-88517767-743774459999878976668978966-871688569789999986


Q ss_pred             HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf             423773103307679999986378765563014545421621122233686673585432078999852761245567
Q gi|254781037|r  141 WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELV  218 (307)
Q Consensus       141 ~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il  218 (307)
                      ..|+.+++.+. |..+.+..|.+|+.||++.-......+--.......+.    .++...--.++-.+++|+++.+.+
T Consensus       165 ~~~~~~i~~~~-~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~iav~k~~~~L~~~i  237 (264)
T PRK11260        165 NVQGVDVRTYD-DDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVT----GEAFSRQESGVALRKGNPDLLKAV  237 (264)
T ss_pred             HCCCCCEEEEC-CHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCEEEC----CCCCCCCEEEEEEECCCHHHHHHH
T ss_conf             08898168636-61899999875986799945999999998689978980----687666508999989999999999


No 12 
>PRK10859 putative transglycosylase; Provisional
Probab=95.16  E-value=0.3  Score=28.46  Aligned_cols=146  Identities=14%  Similarity=0.126  Sum_probs=86.7

Q ss_pred             CCCEEEEECCCHHHHHHH--------HHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHC
Q ss_conf             882899707988889999--------999999997408998338999997327411587556748622699999999870
Q gi|254781037|r    3 KKPFRIGTRCSPLALAHA--------FETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLIS   74 (307)
Q Consensus         3 ~~~i~IgtR~S~LAl~Qa--------~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~   74 (307)
                      .-.|||+||.|+..-.+.        .+.++...+.   -+++.++++..+                   ..++=.+|-+
T Consensus        42 rG~LrV~T~~spttYy~~~~~~~GFEYELak~FA~~---LGV~L~i~~~~~-------------------~~el~~~L~~   99 (507)
T PRK10859         42 RGELRVSTIHSPLTYSTINGKPFGLDYELAKQFADY---LGVKLKVTVRQN-------------------ISQLFDDLDN   99 (507)
T ss_pred             CCEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHH---CCCEEEEEECCC-------------------HHHHHHHHHC
T ss_conf             896899997589659941996477999999999998---099179997499-------------------9999999867


Q ss_pred             CCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC----CCCCCCCCCC-EE--ECCCCCHHHHHHHH-HCCCC
Q ss_conf             98369974034321110122101222365683105665243----2433245673-22--04753028889984-23773
Q gi|254781037|r   75 GEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA----QSLKDLALHS-VI--GTSSLRRKALLLRW-RSDIS  146 (307)
Q Consensus        75 g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~----~~l~~lp~~a-~I--GTsS~RR~aql~~~-~p~l~  146 (307)
                      |++|||...|- ...+....+.  .-++=-...-.||.+.+    +++.||.... .|  |+|-..+-..++.. .|++.
T Consensus       100 G~~DiaAAgLt-~t~~R~~~~~--~~p~Y~~v~q~LVyr~g~~rP~~l~DL~G~~I~V~~gSsy~e~L~~Lk~~~~P~L~  176 (507)
T PRK10859        100 GNADLLAAGLV-YNSERVKNYQ--PGPTYYSVSQQLVYRVGQYRPRTLGDLTGEQLTVAPGHVVVNDLQTLKETKFPELS  176 (507)
T ss_pred             CCCCEEECCCC-CCHHHHHCCC--CCCCCCCEEEEEEEECCCCCCCCHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEE
T ss_conf             99888955787-7853674043--56865030039999589989889778379869981797599999998853489715


Q ss_pred             CHHH-CCCHHHHHHHHHCCCCCEEEEEH
Q ss_conf             1033-07679999986378765563014
Q gi|254781037|r  147 VIDF-RGKIETRLNKLNNNKAHAILLAY  173 (307)
Q Consensus       147 ~~~i-RGNv~TRl~Kl~~g~~DaiilA~  173 (307)
                      .... ..+.+.=|+++.+|++|.+|.-.
T Consensus       177 w~~~~~~~teeLL~~V~~g~IdyTVaDS  204 (507)
T PRK10859        177 WKVDDKKGSAELLEQVIEGKLDYTIADS  204 (507)
T ss_pred             EEECCCCCHHHHHHHHHCCCCCEEEECC
T ss_conf             9955899999999999759877688554


No 13 
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.84  E-value=0.36  Score=27.90  Aligned_cols=147  Identities=10%  Similarity=0.103  Sum_probs=81.0

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCC-CCCCCEEEEECCCCCCCEEEEECCCC-CCCCCCCCCEEECCC-CCHHHHHHHHH
Q ss_conf             9999998709836997403432111-01221012223656831056652432-433245673220475-30288899842
Q gi|254781037|r   66 EEIEKKLISGEIDCAVHSAKDMPTK-LLKGLQISAYLPREDIRDVFISHTAQ-SLKDLALHSVIGTSS-LRRKALLLRWR  142 (307)
Q Consensus        66 kele~aLl~g~iDiAVHSlKDlP~~-~~~~l~i~a~~~R~d~rD~lv~~~~~-~l~~lp~~a~IGTsS-~RR~aql~~~~  142 (307)
                      .+..+++.+|++|+..--.   ++. ....+.+.- +-=..| -|+|.++.. ....|..|.+|+..+ ..-..+++..+
T Consensus       352 ~~~~~~l~~g~~D~l~~~~---~s~~r~~~l~fT~-py~~~p-~ViV~r~~~~~~~~l~~gkrvai~~~~~~~~~l~~~y  426 (1197)
T PRK09959        352 IHAGTQLNPGGWDILPGAI---YSEDRENNVLFAE-AFITTP-YVFVMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMY  426 (1197)
T ss_pred             HHHHHHHHCCCCHHCCCCC---CCCCCCCCCEECC-CCCCCC-EEEEEECCCCCCCCHHCCCEEEECCCCCHHHHHHHHC
T ss_conf             9999998769812203235---7854434655413-235687-5999963786301142198899917850689999868


Q ss_pred             CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHH
Q ss_conf             377310330767999998637876556301454542162112223368667358543207899985276124556776
Q gi|254781037|r  143 SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKV  220 (307)
Q Consensus       143 p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~  220 (307)
                      |++.++.+ .|..+-++.+.+|++||.|-....-.-+ +.......+. ....|..-.-.++.-++++++++..++.+
T Consensus       427 P~i~~v~v-~s~~~al~~v~~G~aDa~v~~l~~a~y~-i~~~~~~~L~-~~~~~~~~~~~lafaV~~d~peL~sILnK  501 (1197)
T PRK09959        427 PEVEWIKV-DNASAAFHKVKEGELDALVATQLNSRYM-IDHYYPNELY-HFLIPGVPNASLSFAFPRGEPELKDIINK  501 (1197)
T ss_pred             CCCEEEEE-CCHHHHHHHHHCCCCCEEEEHHHHHHHH-HHHHCCCCCE-EEECCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             98349980-9999999999778876674244778999-9874566504-87415877632699987998899999999


No 14 
>pfam09084 NMT1 NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine.
Probab=94.43  E-value=0.3  Score=28.39  Aligned_cols=121  Identities=21%  Similarity=0.141  Sum_probs=69.9

Q ss_pred             CCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE--EEECCCCCCCEEEE
Q ss_conf             9833899999732741158755674862269999999987098369974034321110122101--22236568310566
Q gi|254781037|r   34 PPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQI--SAYLPREDIRDVFI  111 (307)
Q Consensus        34 p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i--~a~~~R~d~rD~lv  111 (307)
                      .++++|++...+.++                   .-++|..|++|+++-+.=-+-.....|..+  .+..-..++..+++
T Consensus        19 ~GL~Ve~~~~~~~~~-------------------~~~al~sG~~D~a~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~v   79 (216)
T pfam09084        19 EGLDVEIVEPADPSD-------------------AVQLVAAGKADFGVSYQPSLLLARAKGLPVVSVAALIQHPPNGLIS   79 (216)
T ss_pred             CCCCEEEEECCCCHH-------------------HHHHHHCCCCCEEECCCHHHHHHHHCCCEEEEEEECCCCCCEEEEE
T ss_conf             498089996688278-------------------9999976986778537199999997898499999643589728999


Q ss_pred             ECCC--CCCCCCCCCCEEECCCCC-HHHHHHHHH--CCC---CCHHHCCCHHHHHHHHHCCCCCEEEEEHH
Q ss_conf             5243--243324567322047530-288899842--377---31033076799999863787655630145
Q gi|254781037|r  112 SHTA--QSLKDLALHSVIGTSSLR-RKALLLRWR--SDI---SVIDFRGKIETRLNKLNNNKAHAILLAYA  174 (307)
Q Consensus       112 ~~~~--~~l~~lp~~a~IGTsS~R-R~aql~~~~--p~l---~~~~iRGNv~TRl~Kl~~g~~DaiilA~A  174 (307)
                      .++.  ++++|| +|.+||++..= -...+.+..  -.+   .+.-+.-+-.....-|.+|+.||.++...
T Consensus        80 ~~~~~i~s~~DL-kGk~i~~~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~~al~~G~vDa~~~~~~  149 (216)
T pfam09084        80 LKDSGIKSPKDL-KGKRIGYSGSPFEEALLKALLAKAGGDPSDVTLVNVGGTSLSPALLTGKVDAAIGGYY  149 (216)
T ss_pred             ECCCCCCCHHHH-CCCEEEEECCCHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHCCCCCEEEECCC
T ss_conf             788898997895-8988996379728999999999859998990899678488888985699558996246


No 15 
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=94.03  E-value=0.26  Score=28.80  Aligned_cols=199  Identities=14%  Similarity=0.156  Sum_probs=104.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE-
Q ss_conf             8828997079888899999999999974089983389999973274115875567486226999999998709836997-
Q gi|254781037|r    3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV-   81 (307)
Q Consensus         3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV-   81 (307)
                      .++|+||.-..+-+-+- +.+...+++-   .++++|++.+.   |-.                ....||-+|+||.-. 
T Consensus        30 ~~~ikVG~~~gp~~ei~-e~~~~~~~ek---~G~~veiv~Fs---Dy~----------------~pN~AL~~G~iDaN~f   86 (271)
T PRK11063         30 PNHIKVGVIVGAEQQVA-EVAQKVAKEK---YGLDVELVTFN---DYV----------------LPNEALSKGDIDANAF   86 (271)
T ss_pred             CCEEEEEECCCCHHHHH-HHHHHHHHHH---CCCEEEEEEEC---CCH----------------HHHHHHHCCCCCHHHH
T ss_conf             98189984689879999-9988888860---79768999936---832----------------1558986798442345


Q ss_pred             -EC--CCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCC----CCHHHHHHHH------HCCC---
Q ss_conf             -40--343211101221012223656831056652432433245673220475----3028889984------2377---
Q gi|254781037|r   82 -HS--AKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSS----LRRKALLLRW------RSDI---  145 (307)
Q Consensus        82 -HS--lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS----~RR~aql~~~------~p~l---  145 (307)
                       |-  |.+--  -..|..+.++-+-.-.-=.|-|++++++++||.|++|+-+.    .-|.-.++..      .|+.   
T Consensus        87 QH~~yL~~~n--k~~g~~L~~v~~~~~~P~glYS~K~ksl~elp~Ga~IaIPND~sN~~RAL~lL~~aGLIkLk~~~~~~  164 (271)
T PRK11063         87 QHKPYLDQQI--KDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLL  164 (271)
T ss_pred             HCHHHHHHHH--HHCCCCEEEEEEEEEEEEEEEECCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCC
T ss_conf             5799999999--97799579986677841586423658864756999998048856099999999988988977999987


Q ss_pred             -CCHHHCCCH----------HHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC---CC
Q ss_conf             -310330767----------9999986378765563014545421621122233686673585432078999852---76
Q gi|254781037|r  146 -SVIDFRGKI----------ETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV---NN  211 (307)
Q Consensus       146 -~~~~iRGNv----------~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~---~d  211 (307)
                       .+.+|..|-          ..--+-|++.++|+.+.-..=....|+...-.-.+-.+  .+.|  =+.-|.+|+   +|
T Consensus       165 ~T~~DI~~Npk~l~~~e~daaql~rsl~D~dv~~aviN~~~a~~agl~p~kdal~~E~--~~~p--y~Nvivvr~~~kd~  240 (271)
T PRK11063        165 PTVLDIVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVED--KDSP--YVNLIVAREDNKDA  240 (271)
T ss_pred             CCHHHHHCCCCCCEEEECCHHHHHHHCCCCCEEEEEECHHHHHHCCCCCCCCCEEECC--CCCC--EEEEEEECCCCCCC
T ss_conf             8966885488774899903776443135765108981477897779893425047778--9998--38999982777799


Q ss_pred             CHHHHHHHHHCCHHHHHHH
Q ss_conf             1245567762397888887
Q gi|254781037|r  212 PKAQELVKVINHEDTWDSV  230 (307)
Q Consensus       212 ~~i~~il~~Ind~~T~~~v  230 (307)
                      +.+..+.+....++...-+
T Consensus       241 ~~ik~lv~~~~S~evk~~I  259 (271)
T PRK11063        241 ENVKKFVQAYQSDEVYEAA  259 (271)
T ss_pred             HHHHHHHHHHCCHHHHHHH
T ss_conf             8999999997799999999


No 16 
>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=93.41  E-value=0.31  Score=28.30  Aligned_cols=193  Identities=17%  Similarity=0.169  Sum_probs=101.9

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             89970798888999999999999740899833899999732741158755674862269999999987098369974034
Q gi|254781037|r    6 FRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAK   85 (307)
Q Consensus         6 i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlK   85 (307)
                      |+||.-..|-|-+- +.|...+++.    ++++|++.+.   |-.+                ...||-+|+||+-.  .-
T Consensus         1 lkvG~~~~p~~~i~-~~v~~~~~~~----Gi~veiv~F~---Dy~~----------------pN~AL~~GeIDaN~--fQ   54 (236)
T pfam03180         1 LKVGATPGPHAEVL-EVAKPLAKKK----GLDLEIVEFT---DYVQ----------------PNTALADGEIDANA--FQ   54 (236)
T ss_pred             CEEEECCCCHHHHH-HHHHHHHHHC----CCEEEEEEEC---CCCC----------------HHHHHHCCCCCHHH--HC
T ss_conf             98964389769999-9999999964----9879999816---8645----------------50797789955244--43


Q ss_pred             CCCC----CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCC----CCHHHHHHHHH------CC----CCC
Q ss_conf             3211----101221012223656831056652432433245673220475----30288899842------37----731
Q gi|254781037|r   86 DMPT----KLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSS----LRRKALLLRWR------SD----ISV  147 (307)
Q Consensus        86 DlP~----~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS----~RR~aql~~~~------p~----l~~  147 (307)
                      -.|-    .-..|..+.++-+---.-=.|-|++++++++||.|++|+-+.    .-|.-.++...      ++    ..+
T Consensus        55 H~~yl~~~n~~~g~~L~~v~~~~~~p~glYS~k~ksl~~lp~Ga~IaIpnD~sN~~RAL~lL~~aGLI~Lk~~~~~~~t~  134 (236)
T pfam03180        55 HLPYLDQFNKEGGLDLVAVGNTHVEPIGLYSKKYKSLSELPDGATIAVPNDPSNEGRALLLLEKAGLIKLKDGAGLLATV  134 (236)
T ss_pred             CHHHHHHHHHHCCCCEEEEEEEEECCEEEEECCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCH
T ss_conf             89999999997799679963046723795433768875857999898158844299999999988988976899987898


Q ss_pred             HHHCCCH---------HHH-HHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC---CCCHH
Q ss_conf             0330767---------999-9986378765563014545421621122233686673585432078999852---76124
Q gi|254781037|r  148 IDFRGKI---------ETR-LNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV---NNPKA  214 (307)
Q Consensus       148 ~~iRGNv---------~TR-l~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~---~d~~i  214 (307)
                      .+|..|-         ... -+-|  .++|+.|+-..=...-|+...-.-.+..    +..-+=+..+.+|+   +|+++
T Consensus       135 ~DI~~Npk~l~~~ev~a~ql~~~l--~dvD~avin~n~a~~agl~p~~~~l~~e----~~~~~y~n~ivvr~~~~d~~~i  208 (236)
T pfam03180       135 KDITENPKNLKIKELEAAQLPRAL--DDVDAAVINTNYALQAGLDPKKDALFEE----DKDSPYVNIIVVREDDKDDPAV  208 (236)
T ss_pred             HHHHHCCCCCEEEEECHHHHHHHC--CCCCEEEECHHHHHHCCCCHHHHHHHCC----CCCCCEEEEEEEECCCCCCHHH
T ss_conf             889728677669991677755421--6657899865679887949212133147----8899837999981777699999


Q ss_pred             HHHHHHHCCHHHHHHH
Q ss_conf             5567762397888887
Q gi|254781037|r  215 QELVKVINHEDTWDSV  230 (307)
Q Consensus       215 ~~il~~Ind~~T~~~v  230 (307)
                      ..+.+....++...-+
T Consensus       209 k~l~e~~~s~~vk~~i  224 (236)
T pfam03180       209 KKLVKAYQSEEVKAFI  224 (236)
T ss_pred             HHHHHHHCCHHHHHHH
T ss_conf             9999998799999999


No 17 
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=92.81  E-value=0.85  Score=25.49  Aligned_cols=147  Identities=16%  Similarity=0.214  Sum_probs=78.2

Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCC-CHHHHHHHHH
Q ss_conf             9999987098369974034321110122101222365683105665243---24332456732204753-0288899842
Q gi|254781037|r   67 EIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSL-RRKALLLRWR  142 (307)
Q Consensus        67 ele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~-RR~aql~~~~  142 (307)
                      ++-.+|.+|++|+++.++.--|.. ...+.... +--.. .-+++.+++   .++++|. |.+||+-.- --...+...+
T Consensus        49 ~~~~~l~~g~~D~~~~~~~~t~~R-~~~~~fs~-p~~~~-~~~~~~~~~~~~~~~~dl~-g~~i~v~~g~~~~~~l~~~~  124 (218)
T cd00134          49 GLITALKSGKVDLIAAGMTITPER-AKQVDFSD-PYYKS-GQVILVKKGSPIKSVKDLK-GKKVAVQKGSTAEKYLKKAL  124 (218)
T ss_pred             HHHHHHHCCCCCEEEEEECCCHHH-HCCCCCCC-CEECC-CEEEEEECCCCCCCHHHHC-CCEEEEECCCHHHHHHHHHH
T ss_conf             999998579977688850258566-14145576-44415-7079998689999989977-96267958988999999731


Q ss_pred             CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCC-CCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf             377310330767999998637876556301454542162112-2233686673585432078999852761245567762
Q gi|254781037|r  143 SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKV-IKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVI  221 (307)
Q Consensus       143 p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~-i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~I  221 (307)
                      |+.++..+- |.+.-+++|..|+.|+.+.-...+..+-.... ....+.+. +  ..-.-.+++-.++++.++   +..+
T Consensus       125 ~~~~~~~~~-~~~~~~~~l~~G~vD~~v~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l---~~~~  197 (218)
T cd00134         125 PEAKVVSYD-DNAEALAALENGRADAVIVDEIALAALLKKHPPELKIVGPS-I--DLEPLGFGVAVGKDNKEL---LDAV  197 (218)
T ss_pred             CCCEEEEEC-CHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCEEECCC-C--CCCCEEEEEEECCCCHHH---HHHH
T ss_conf             575499969-99999999985994699976999999998679981996356-6--767348999974999999---9999


Q ss_pred             CCH
Q ss_conf             397
Q gi|254781037|r  222 NHE  224 (307)
Q Consensus       222 nd~  224 (307)
                      |..
T Consensus       198 n~~  200 (218)
T cd00134         198 NKA  200 (218)
T ss_pred             HHH
T ss_conf             999


No 18 
>pfam00497 SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3.
Probab=92.37  E-value=0.84  Score=25.54  Aligned_cols=144  Identities=15%  Similarity=0.185  Sum_probs=74.8

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC-------CCCCCCCCCCEEECCCCCHHHH-
Q ss_conf             99999987098369974034321110122101222365683105665243-------2433245673220475302888-
Q gi|254781037|r   66 EEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA-------QSLKDLALHSVIGTSSLRRKAL-  137 (307)
Q Consensus        66 kele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-------~~l~~lp~~a~IGTsS~RR~aq-  137 (307)
                      ++.-.++.+|++|++.+++-.-|.. .+.+.... +--..+.-+++.++.       +++.+|. |-+||+..--...+ 
T Consensus        48 ~~~~~~l~~g~~D~~~~~~~~t~~R-~~~~~~s~-p~~~~~~~~~~~~~~~~~~~~~~~~~dL~-~~~I~v~~g~~~~~~  124 (224)
T pfam00497        48 DGLIPALQSGKIDVIIAGMTITPER-KKKVDFSD-PYYYSGQVLVVRKDSPPKIKSIKDLADLK-GKKVGVQKGTTQEDL  124 (224)
T ss_pred             HHHHHHHHCCCCCEEECCCCCCHHH-HHHHCCCC-CEEECCEEEEEECCCCCCCCCCCCHHHHC-CCEEEEECCCHHHHH
T ss_conf             9999999769987661367788555-10212575-34404717999989876545658989977-977999689779999


Q ss_pred             HHHH-HCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHH----HHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCC
Q ss_conf             9984-2377310330767999998637876556301454----5421621122233686673585432078999852761
Q gi|254781037|r  138 LLRW-RSDISVIDFRGKIETRLNKLNNNKAHAILLAYAG----IKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNP  212 (307)
Q Consensus       138 l~~~-~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Ag----l~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~  212 (307)
                      +... .++.++..+. +.+.-+++|..|+.|+++.-...    +++.+....+        ..|...+.-+++-+++++.
T Consensus       125 l~~~~~~~~~i~~~~-~~~~~l~~L~~gr~D~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~k~~~  195 (224)
T pfam00497       125 LKELAPKGAEIVLYD-DQAEALQALAAGRVDAVVADSPVAAYLIKKNPGLNLV--------VGEPLSGEPYGIAVRKGDP  195 (224)
T ss_pred             HHHHCCCCCEEEEEC-CHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEE--------ECCCCCCCEEEEEEECCCH
T ss_conf             986062445169954-2788888987497689995799999999868997299--------4367776149999979999


Q ss_pred             HHHHHHHHHCCH
Q ss_conf             245567762397
Q gi|254781037|r  213 KAQELVKVINHE  224 (307)
Q Consensus       213 ~i~~il~~Ind~  224 (307)
                      .+   +..+|..
T Consensus       196 ~l---~~~~n~~  204 (224)
T pfam00497       196 EL---LAAVNKA  204 (224)
T ss_pred             HH---HHHHHHH
T ss_conf             99---9999999


No 19 
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=92.27  E-value=1  Score=25.05  Aligned_cols=153  Identities=16%  Similarity=0.137  Sum_probs=89.5

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC----CCCCCCCC---CCEEECCCCCHHHHH
Q ss_conf             99999987098369974034321110122101222365683105665243----24332456---732204753028889
Q gi|254781037|r   66 EEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA----QSLKDLAL---HSVIGTSSLRRKALL  138 (307)
Q Consensus        66 kele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~----~~l~~lp~---~a~IGTsS~RR~aql  138 (307)
                      ..+-.+|..|++|+.+.++=-.| +..+.+.. ..+.-....-+++.+..    ++++||.-   +...||+ .+-....
T Consensus        87 ~~~~~~l~~g~~D~~~~~~~~t~-~r~~~~~f-s~py~~~~~~~~~~~~~~~~~~~~~DL~gk~v~v~~gt~-~~~~~~~  163 (275)
T COG0834          87 DGLIPALKAGKVDIIIAGMTITP-ERKKKVDF-SDPYYYSGQVLLVKKDSDIGIKSLEDLKGKKVGVQLGTT-DEAEEKA  163 (275)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCH-HHHHCCCC-CCCEEECCEEEEEECCCCCCCCCHHHHCCCEEEEECCCH-HHHHHHH
T ss_conf             77638987799888985673687-77520056-777365465899976885455898895897699966845-8888776


Q ss_pred             HHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC--CCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHH
Q ss_conf             98423773103307679999986378765563014545421--6211222336866735854320789998527612455
Q gi|254781037|r  139 LRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL--KKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQE  216 (307)
Q Consensus       139 ~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL--~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~  216 (307)
                      ....+..+++....+ ..-+..|.+|+.|+.+.-..-+..+  ..............+.+   ...+++..++++ . .+
T Consensus       164 ~~~~~~~~~~~~~~~-~~~~~al~~Gr~Da~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~-~~  237 (275)
T COG0834         164 KKPGPNAKIVAYDSN-AEALLALKNGRADAVVSDSAVLAGLKLLKKNPGLYVLLVFPGLS---VEYLGIALRKGD-D-PE  237 (275)
T ss_pred             HHCCCCCEEEECCCH-HHHHHHHHCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCEEEEECCCC-H-HH
T ss_conf             404677449981888-99999998499889970688876666530155653211455665---432000124685-5-99


Q ss_pred             HHHHHCCHHHH
Q ss_conf             67762397888
Q gi|254781037|r  217 LVKVINHEDTW  227 (307)
Q Consensus       217 il~~Ind~~T~  227 (307)
                      +...+|..-..
T Consensus       238 l~~~~n~~l~~  248 (275)
T COG0834         238 LLEAVNKALKE  248 (275)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 20 
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=91.18  E-value=0.94  Score=25.22  Aligned_cols=196  Identities=16%  Similarity=0.127  Sum_probs=92.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r    4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS   83 (307)
Q Consensus         4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS   83 (307)
                      ++|+||+..-+=|-+--..+...+++.    +++++|+.++     +-..              -..||-+|++|.-.  
T Consensus        29 ~~I~vg~~~~p~a~ile~~~k~~~~k~----Gi~l~i~~Ft-----DY~~--------------PN~AL~~gdiDaN~--   83 (268)
T COG1464          29 KTIKVGATPGPHAEILEVVVKPALKKK----GLDLKIVEFT-----DYVQ--------------PNEALADGDIDANA--   83 (268)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEEEC-----CCCC--------------HHHHHHCCCCCCHH--
T ss_conf             717996368965999999987788855----9659999814-----8766--------------55787668846001--


Q ss_pred             CCCCCC---CCCC-CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCC----CCHHHHHHHHH------C----CC
Q ss_conf             343211---1012-21012223656831056652432433245673220475----30288899842------3----77
Q gi|254781037|r   84 AKDMPT---KLLK-GLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSS----LRRKALLLRWR------S----DI  145 (307)
Q Consensus        84 lKDlP~---~~~~-~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS----~RR~aql~~~~------p----~l  145 (307)
                      +--.|.   +.-+ +..+.++-.-.-.-=.+-|++++++++||.|++|+-+-    .-|.-.++.--      +    .-
T Consensus        84 FQH~pyL~~~~k~~~~~Lv~vg~~~i~Pmg~YSkk~ksl~el~~GatIaiPNDpsN~gRAL~lL~~aGLIkLk~~~~~~a  163 (268)
T COG1464          84 FQHKPYLDQFNKEHGGKLVAVGNTHIEPMGLYSKKYKSLAELKDGATIAIPNDPTNEGRALLLLQKAGLIKLKDGVNLLA  163 (268)
T ss_pred             HHCHHHHHHHHHHCCCCEEEEEEEEECCCEECCHHCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCC
T ss_conf             21468899999973997898755776142501220086846799998988789873567999999879679768876558


Q ss_pred             CCHHHCCCHHHHHHHHHCCCCCEEEEEHH------------HHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC---C
Q ss_conf             31033076799999863787655630145------------45421621122233686673585432078999852---7
Q gi|254781037|r  146 SVIDFRGKIETRLNKLNNNKAHAILLAYA------------GIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV---N  210 (307)
Q Consensus       146 ~~~~iRGNv~TRl~Kl~~g~~DaiilA~A------------gl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~---~  210 (307)
                      .+.+|..|-    ++|.-.|.||-.|+.|            =...-||+..-.-++.++  - ...+=+--|.+|+   +
T Consensus       164 T~~DI~eNP----K~lki~EldAaqlpRaLddvD~AvIN~nyA~~AgL~p~kdai~~e~--~-~~spY~Niivvr~~d~d  236 (268)
T COG1464         164 TPKDITENP----KNLKIKELEAAQLPRALDDVDAAVINTNYALQAGLNPKKDALFEED--K-DSSPYVNIIVVREEDKD  236 (268)
T ss_pred             CHHHHHHCC----CCCEEEECCHHHCCCCCCCCCEEEECCHHHHHCCCCCCCCCEECCC--C-CCCCCEEEEEECCCCCC
T ss_conf             887886194----4575687056756532035677987430797759991204214146--6-67862479997155668


Q ss_pred             CCHHHHHHHHHCCHHHHHHHH
Q ss_conf             612455677623978888878
Q gi|254781037|r  211 NPKAQELVKVINHEDTWDSVN  231 (307)
Q Consensus       211 d~~i~~il~~Ind~~T~~~v~  231 (307)
                      ++.+..+++....+++...+.
T Consensus       237 ~~~ik~lv~a~qs~evk~~i~  257 (268)
T COG1464         237 DPAVKKLVEAYQSDEVKAFIE  257 (268)
T ss_pred             CHHHHHHHHHHCCHHHHHHHH
T ss_conf             889999999974999999999


No 21 
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=89.32  E-value=1.9  Score=23.29  Aligned_cols=149  Identities=17%  Similarity=0.199  Sum_probs=87.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r    4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS   83 (307)
Q Consensus         4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS   83 (307)
                      +++|||.-++.+.+.= ..-...+++.  +++..++.+.+.+ |                  -.+-++|..|.+|++  +
T Consensus        27 ~~lrIgyq~~~~~~~~-~~~~~~~ek~--~~~~kV~w~~F~~-G------------------~~~~eAl~aG~iD~~--~   82 (314)
T PRK11553         27 EALRIGYQKGSIGLVL-AKSHQLLEKR--FPQTKISWVEFPA-G------------------PQMLEALNVGSIDLG--S   82 (314)
T ss_pred             CEEEEEECCCCHHHHH-HHHCCHHHHH--CCCCCEEEEECCC-C------------------HHHHHHHHCCCCCEE--E
T ss_conf             7599996177415899-9852867661--7898358997897-4------------------899999976997545--1


Q ss_pred             CCCCCCCC----CCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECC--CCCHHHHHHHH------HCCCCCH
Q ss_conf             34321110----122101222365683105665243---243324567322047--53028889984------2377310
Q gi|254781037|r   84 AKDMPTKL----LKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTS--SLRRKALLLRW------RSDISVI  148 (307)
Q Consensus        84 lKDlP~~~----~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTs--S~RR~aql~~~------~p~l~~~  148 (307)
                      +=|.|...    ...+.+.++.+.....++++.+.+   +++.|| +|-+|++.  |---...++.+      ..|++++
T Consensus        83 ~g~~p~i~a~a~G~~~~~va~~~~~~~~~~i~V~~~S~I~s~aDL-kGKkVa~~~Gs~~~~~l~~aL~~aGL~~~DV~~v  161 (314)
T PRK11553         83 TGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADL-KGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPT  161 (314)
T ss_pred             ECCHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCHHHH-CCCEEEEECCCHHHHHHHHHHHHCCCCHHHEEEE
T ss_conf             158589999866998699998637886418998489877888893-8998974179737999999999869988991898


Q ss_pred             HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC
Q ss_conf             3307679999986378765563014545421
Q gi|254781037|r  149 DFRGKIETRLNKLNNNKAHAILLAYAGIKRL  179 (307)
Q Consensus       149 ~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL  179 (307)
                      ++  .-..-..-|.+|+.||.+....-+.+.
T Consensus       162 ~l--~p~d~~aAl~~G~VDA~~~w~P~~~~a  190 (314)
T PRK11553        162 YL--TPADARAAFQQGNVDAWAIWDPYYSAA  190 (314)
T ss_pred             EC--CCHHHHHHHHCCCCCEEEECCHHHHHH
T ss_conf             45--938899999669978899756789999


No 22 
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=88.77  E-value=2  Score=23.05  Aligned_cols=196  Identities=11%  Similarity=0.150  Sum_probs=112.5

Q ss_pred             CCEEEEECCC--HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             8289970798--88899999999999974089983389999973274115875567486226999999998709836997
Q gi|254781037|r    4 KPFRIGTRCS--PLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV   81 (307)
Q Consensus         4 ~~i~IgtR~S--~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV   81 (307)
                      +.+|||--.|  |+.++|++-.   +++.   .++.++.+.+.+-.                   ++-+||..|.+||+ 
T Consensus        23 ~~v~igYq~~~~p~~~aka~g~---~ek~---~G~kV~W~~F~sG~-------------------~~~eAlasG~vDig-   76 (320)
T PRK11480         23 VNVTVAYQTSAEPAKVAQADNT---FAKE---SGATVDWRKFDSGA-------------------SIVRALASGDVQIG-   76 (320)
T ss_pred             CEEEEEEECCCCCHHHHHHCCC---HHHH---CCCCEEEEECCCHH-------------------HHHHHHHCCCCCEE-
T ss_conf             4599998069862899986384---5675---19812799779759-------------------99999966997564-


Q ss_pred             ECCCCCCCCC--CCC--CEEEEECCCCCCCEEEEECCC-CCCCCCCCCCEEECCCCCH--HHHHHHH------HCCCCCH
Q ss_conf             4034321110--122--101222365683105665243-2433245673220475302--8889984------2377310
Q gi|254781037|r   82 HSAKDMPTKL--LKG--LQISAYLPREDIRDVFISHTA-QSLKDLALHSVIGTSSLRR--KALLLRW------RSDISVI  148 (307)
Q Consensus        82 HSlKDlP~~~--~~~--l~i~a~~~R~d~rD~lv~~~~-~~l~~lp~~a~IGTsS~RR--~aql~~~------~p~l~~~  148 (307)
                       ++=+.|...  ..|  +.+..+.....-.+++|.+++ .+..|| +|-+|++.-.--  -..++.+      ..|++++
T Consensus        77 -~~G~~P~~~a~a~g~~ik~v~i~~~~~~~ealvv~~~I~s~~DL-kGKkVav~~gS~~hy~ll~aL~~~Gl~~~dV~iv  154 (320)
T PRK11480         77 -NLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKTISKPEDL-IGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIV  154 (320)
T ss_pred             -CCCCCHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCCHHHC-CCCEEECCCCCCHHHHHHHHHHHCCCCHHHEEEE
T ss_conf             -57784799998679985999985478974389956899996884-9998960788731899999999859998990788


Q ss_pred             HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCC--CCCCCCEEEEEEE-----CCCCHHHHHHHHH
Q ss_conf             33076799999863787655630145454216211222336866735--8543207899985-----2761245567762
Q gi|254781037|r  149 DFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFP--PSPGQGAICIETH-----VNNPKAQELVKVI  221 (307)
Q Consensus       149 ~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~--PA~gQGaIaIe~r-----~~d~~i~~il~~I  221 (307)
                      ++.=  ..-..-+..|+.||...=.-.+.++.-..+  ..++-.+.-  ..|-=. + ...|     ++-+.+..+++.+
T Consensus       155 ~m~p--~d~~aA~~~G~vDa~~~W~P~l~~l~~~G~--vL~~s~~~~~~G~pt~d-~-~vv~~~Fa~e~Pe~V~~flkv~  228 (320)
T PRK11480        155 NLQP--PAIIAAWQRGDIDGAYVWAPAVNALEKDGK--VLTDSEQVGQWGAPTLD-V-WVVRKDFAEKHPEVVKAFAKSA  228 (320)
T ss_pred             ECCC--HHHHHHHHCCCCCEEEECCHHHHHHHHCCC--EEEECHHHHHCCCCCCC-E-EEECHHHHHHCHHHHHHHHHHH
T ss_conf             4492--889999976997879626779999984397--88641664204897455-6-8863999988989999999999


Q ss_pred             CCHHHHHHHHHH
Q ss_conf             397888887889
Q gi|254781037|r  222 NHEDTWDSVNCE  233 (307)
Q Consensus       222 nd~~T~~~v~aE  233 (307)
                      .+...+....-+
T Consensus       229 ~~A~~~~~~npd  240 (320)
T PRK11480        229 IDAQQPYIANPD  240 (320)
T ss_pred             HHHHHHHHHCHH
T ss_conf             999999995967


No 23 
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=88.34  E-value=2.2  Score=22.86  Aligned_cols=142  Identities=16%  Similarity=0.242  Sum_probs=78.3

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCCH-HHHHHHH
Q ss_conf             99999987098369974034321110122101222365683105665243---2433245673220475302-8889984
Q gi|254781037|r   66 EEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLRR-KALLLRW  141 (307)
Q Consensus        66 kele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~RR-~aql~~~  141 (307)
                      ++.-.+|.+|++|++.-++---|.. .+.+....  +=-..+-+++.+.+   .++++| .|.+||+..--- ...+...
T Consensus        49 ~r~~~~l~~g~~D~~~~~~~~~~~r-~~~~~~s~--p~~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~~l~~~  124 (219)
T smart00062       49 DNLLTALKSGKIDVVAAGMTITPER-AKQVDFSD--PYYKSGQVILVRKDSPIKSLEDL-KGKKVAVVAGTTGEELLKKL  124 (219)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCHHH-HHCCCCCC--CEECCCEEEEEECCCCCCCHHHH-CCCEEEEECCCHHHHHHHHH
T ss_conf             9999999758977053113578677-50022245--50024447999658997997996-79779995798799999972


Q ss_pred             HCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHC----CCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHH
Q ss_conf             23773103307679999986378765563014545421----62112223368667358543207899985276124556
Q gi|254781037|r  142 RSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRL----KKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQEL  217 (307)
Q Consensus       142 ~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL----~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~i  217 (307)
                      .++.++..+. |.+.-+++|.+|+.|+.|.-...+...    +..+... ..     .+..-+.-+++-.++++..+.+.
T Consensus       125 ~~~~~~~~~~-~~~~~~~~l~~g~vD~~i~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~l~~~  197 (219)
T smart00062      125 YPEAKIVSYD-SQAEALAALKAGRADAAVADAPALAALVKQHGLPELKI-VG-----DPLDTPEGYAFAVRKGDPELLDK  197 (219)
T ss_pred             CCCCEEEEEC-CHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEE-EC-----CCCCCCCEEEEEEECCCHHHHHH
T ss_conf             8785289859-99999999983987999977999999998489998378-34-----67777641999995999999999


Q ss_pred             H
Q ss_conf             7
Q gi|254781037|r  218 V  218 (307)
Q Consensus       218 l  218 (307)
                      +
T Consensus       198 ~  198 (219)
T smart00062      198 I  198 (219)
T ss_pred             H
T ss_conf             9


No 24 
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=87.98  E-value=2.3  Score=22.72  Aligned_cols=142  Identities=18%  Similarity=0.224  Sum_probs=74.9

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEC--CCCCCCEEEEECC--CCCCCCCCCCCEEEC--CCCCHHHH-
Q ss_conf             9999999870983699740343211101221012223--6568310566524--324332456732204--75302888-
Q gi|254781037|r   65 TEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYL--PREDIRDVFISHT--AQSLKDLALHSVIGT--SSLRRKAL-  137 (307)
Q Consensus        65 tkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~--~R~d~rD~lv~~~--~~~l~~lp~~a~IGT--sS~RR~aq-  137 (307)
                      ...+-.+|.+|++|+.+.++=--    ++......+.  .=.+..-+++.++  .++++|| +|.+||+  +|.-.... 
T Consensus        90 ~~~~~p~L~~gkvD~i~~~~tiT----~eR~k~vdFS~PY~~~~~~ilv~k~~~i~~~~DL-~gk~Vgv~~gst~~~~~~  164 (259)
T PRK11917         90 AKTRGPLLDNGSVDAVIATFTIT----PERKRIYNFSEPYYQDAIGLLVLKEKNYKSLADM-KGANIGVAQAATTKKAIG  164 (259)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCC----CCHHCCEEECCCEEEEEEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHH
T ss_conf             78776898779855998664767----6543057622476996559999899999998995-898179992784699999


Q ss_pred             --HHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHH
Q ss_conf             --998423773103307679999986378765563014545421621122233686673585432078999852761245
Q gi|254781037|r  138 --LLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQ  215 (307)
Q Consensus       138 --l~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~  215 (307)
                        .+....+.++..+. |...-...|.+|..||.+....-+.-.  .......++ +.+-|    --.||-.|++|++..
T Consensus       165 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~grvDa~~~d~~~~~~~--~~~~~~~~~-~~~~~----~~~giavrKgd~~l~  236 (259)
T PRK11917        165 EAAKKIGIDVKFSEFP-DYPSIKAALDAKRVDAFSVDKSILLGY--VDDKSEILP-DSFEP----QSYGIVTKKDDPAFA  236 (259)
T ss_pred             HHHHHCCCCEEEEECC-CHHHHHHHHHCCCEEEEECCHHHHHHH--HHCCCCCCC-CCCCC----CEEEEEEECCCHHHH
T ss_conf             9888608851699649-999999999849802998269999999--861980168-88875----258999948998999


Q ss_pred             HHHH
Q ss_conf             5677
Q gi|254781037|r  216 ELVK  219 (307)
Q Consensus       216 ~il~  219 (307)
                      +.+.
T Consensus       237 ~~vn  240 (259)
T PRK11917        237 KYVD  240 (259)
T ss_pred             HHHH
T ss_conf             9999


No 25 
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=86.09  E-value=2.9  Score=22.05  Aligned_cols=158  Identities=15%  Similarity=0.141  Sum_probs=92.0

Q ss_pred             HHHHHHCCCCEEEEECCCCCCC--CCCC--CCEEEEECCCCCCCEEEEECCCC---CCCCCCCCCEEECCCCCH-HHHHH
Q ss_conf             9999870983699740343211--1012--21012223656831056652432---433245673220475302-88899
Q gi|254781037|r   68 IEKKLISGEIDCAVHSAKDMPT--KLLK--GLQISAYLPREDIRDVFISHTAQ---SLKDLALHSVIGTSSLRR-KALLL  139 (307)
Q Consensus        68 le~aLl~g~iDiAVHSlKDlP~--~~~~--~l~i~a~~~R~d~rD~lv~~~~~---~l~~lp~~a~IGTsS~RR-~aql~  139 (307)
                      ..++|..|.+|+|+...=+.|.  ....  .+.+.+.+.+.....+++.+...   ++.|| +|-+||.+-+-. ...++
T Consensus        74 ~~~~l~~G~~D~a~~~~~~~~~~~~~~~g~pv~~va~~~~~~~~~~i~~~~~~~i~~~adl-kGk~vg~~~~~~~~~~~l  152 (335)
T COG0715          74 VLEALAAGALDFAVYYTGDTPLIAAGAAGAPVKVVAALVQNGNGIALLVLKDSGIKSVADL-KGKKVGVPFGGSTSDFLL  152 (335)
T ss_pred             HHHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEEEECCCCEEEEECCCCCCCCHHHC-CCCEEEEECCCCCHHHHH
T ss_conf             9999976998887423785599996356999799998743797329997388776771333-899899818997079999


Q ss_pred             HH-H--CCCCCH---HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC----
Q ss_conf             84-2--377310---3307679999986378765563014545421621122233686673585432078999852----
Q gi|254781037|r  140 RW-R--SDISVI---DFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV----  209 (307)
Q Consensus       140 ~~-~--p~l~~~---~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~----  209 (307)
                      +. .  -.+...   .+.-.-..-..-|..|..||.+.-.--..++.........++.....+ --+..+ +-.++    
T Consensus       153 ~~~L~~~Gl~~~dv~~v~~~~~~~~~al~~g~vda~~~~ep~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~  230 (335)
T COG0715         153 RYALAKAGLDPDDVELVNLPPADAVAALAAGQVDAFVVWEPWNAAAEGEGGGRVLLDGADLWG-NHPELV-LVVRKEFIE  230 (335)
T ss_pred             HHHHHHCCCCHHHCEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCEEEEECCCCCC-CCCEEE-EEECHHHHH
T ss_conf             999998699989946873692999999975986889966679899731578579861566676-674269-995588776


Q ss_pred             CC-CHHHHHHHHHCCHHHHH
Q ss_conf             76-12455677623978888
Q gi|254781037|r  210 NN-PKAQELVKVINHEDTWD  228 (307)
Q Consensus       210 ~d-~~i~~il~~Ind~~T~~  228 (307)
                      .+ ..+..+++.+...--+.
T Consensus       231 ~~p~~~~~~v~a~~~a~~~~  250 (335)
T COG0715         231 ANPEAVKAFLKALAKATAWA  250 (335)
T ss_pred             HCHHHHHHHHHHHHHHHHHH
T ss_conf             69999999999999999999


No 26 
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=85.25  E-value=3.2  Score=21.79  Aligned_cols=178  Identities=19%  Similarity=0.203  Sum_probs=90.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r    4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS   83 (307)
Q Consensus         4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS   83 (307)
                      -+|+||+=.|- +...--.+...+.+.  +|++++++..-                    -+.++.+.|.+|++|+|+-+
T Consensus        95 g~lrI~~~~s~-~~~~lp~~l~~f~~~--~P~v~i~l~~~--------------------~~~~~~~~l~~~~~D~~i~~  151 (307)
T CHL00180         95 GTLIIGASQTT-GTYLMPRLIGLFRQK--YPQIAVQLQVH--------------------STRRIAWSVANGQIDLAIIG  151 (307)
T ss_pred             CCCCCCCCCHH-HHHHHHHHHHHHHHH--CCCCCEEEEEC--------------------CHHHHHHHHHCCCEEEEEEC
T ss_conf             86010104066-666435889999998--88997278977--------------------99999999987980099975


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCEEEEECCC-------CCCCCCCCCCEEE---CCCCCHHHH--HHHHHC---CCCCH
Q ss_conf             34321110122101222365683105665243-------2433245673220---475302888--998423---77310
Q gi|254781037|r   84 AKDMPTKLLKGLQISAYLPREDIRDVFISHTA-------QSLKDLALHSVIG---TSSLRRKAL--LLRWRS---DISVI  148 (307)
Q Consensus        84 lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-------~~l~~lp~~a~IG---TsS~RR~aq--l~~~~p---~l~~~  148 (307)
                      . .+|....+++...-+  .+++--+.+++++       .+++||..-.-|+   .++.||...  +.....   .+++.
T Consensus       152 ~-~~~~~~~~~l~~~~l--~~~~~~lv~~~~hpla~~~~v~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (307)
T CHL00180        152 G-EVPTELKDNLQVTPY--AEDELALILPKSHPFAKLKKIQKEDLYRLRFIALDSQSTIRKVIDNILIQNGIDSSRFKIE  228 (307)
T ss_pred             C-CCCCCCCCCEEEEEE--ECCCEEEEECCCCHHHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             7-788666785499994--3242799973898022399999999817984871799968999999999769984554279


Q ss_pred             HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCC
Q ss_conf             3307679999986378765563014545421621122233686673585432078999852761
Q gi|254781037|r  149 DFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNP  212 (307)
Q Consensus       149 ~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~  212 (307)
                      ---+++++=++-+.+|-.=+ +|....+.+---.... ..++++....   +=.+++..+++..
T Consensus       229 ~~~~~~~~l~~~v~~g~Gia-~lP~~~v~~~~~~g~l-~~~~~~~~~~---~r~i~lv~~~~r~  287 (307)
T CHL00180        229 MELNSIEAIKNAVQSGLGAA-FVSVSAIEKELELGTL-HWAKIENITI---KRTLSIITNPNRY  287 (307)
T ss_pred             EEECCHHHHHHHHHHCCEEE-ECCHHHHHHHHHCCCE-EEEECCCCCC---EEEEEEEEECCCC
T ss_conf             99780999999999399499-8259999989877988-9997899985---0499999979597


No 27 
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=84.61  E-value=3.4  Score=21.61  Aligned_cols=146  Identities=16%  Similarity=0.141  Sum_probs=80.3

Q ss_pred             CCCEEEEECCC--HHHHHHHH-------HHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH
Q ss_conf             88289970798--88899999-------9999999740899833899999732741158755674862269999999987
Q gi|254781037|r    3 KKPFRIGTRCS--PLALAHAF-------ETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLI   73 (307)
Q Consensus         3 ~~~i~IgtR~S--~LAl~Qa~-------~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl   73 (307)
                      .++|+|||..+  |....+..       .+.+++.+.   -++++|++++.                   | .++-.+|.
T Consensus        24 ~~~l~Vg~~~~~pPf~f~~~g~~~GfdvDl~~~ia~~---lg~~~e~~~~~-------------------~-~~~i~~l~   80 (247)
T PRK09495         24 DKELVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKE---LKLDYTLKPMD-------------------F-SGIIPALQ   80 (247)
T ss_pred             CCEEEEEECCCCCCEEECCCCEEEEEHHHHHHHHHHH---HCCCEEEEECC-------------------H-HHHHHHHH
T ss_conf             9949999899879805767992788299999999999---69946999778-------------------8-99999997


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCC-HHHHHHHHHCCCCCHH
Q ss_conf             098369974034321110122101222365683105665243---243324567322047530-2888998423773103
Q gi|254781037|r   74 SGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLR-RKALLLRWRSDISVID  149 (307)
Q Consensus        74 ~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~R-R~aql~~~~p~l~~~~  149 (307)
                      .|++|+++.++---|. ...-+.. .-+--..+.-+++.++.   .+++||. |-+||.-.-= -..+++...|+.+++.
T Consensus        81 ~g~~D~~~~~~~~T~e-R~~~~~F-S~py~~~~~~i~v~~~~~~i~~~~dL~-Gk~v~v~~Gs~~~~~~~~~~~~~~i~~  157 (247)
T PRK09495         81 TKNIDLALAGITITDE-RKKAIDF-SDGYYKSGLLVMVKANNNDIKSVKDLD-GKVVAVKSGTGSVDYAKANIKTKDLRQ  157 (247)
T ss_pred             CCCCCEEECCCCCCHH-HHHHCCC-CCCCEEEEEEEEEECCCCCCCCHHHCC-CCEEEEECCCHHHHHHHHHCCCCCEEE
T ss_conf             6995636466014789-9843334-777077246999989997779824548-988998469589999996388986696


Q ss_pred             HCCCHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf             30767999998637876556301454
Q gi|254781037|r  150 FRGKIETRLNKLNNNKAHAILLAYAG  175 (307)
Q Consensus       150 iRGNv~TRl~Kl~~g~~DaiilA~Ag  175 (307)
                       -.|.+.-+..|.+|+.||.+.-..-
T Consensus       158 -~~~~~~~~~aL~~GrvDa~v~d~~~  182 (247)
T PRK09495        158 -FPNIDNAYLELGTGRADAVLHDTPN  182 (247)
T ss_pred             -CCCHHHHHHHHHCCCEEEEEECHHH
T ss_conf             -5988999998765873499956899


No 28 
>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=83.56  E-value=3.8  Score=21.32  Aligned_cols=188  Identities=14%  Similarity=0.096  Sum_probs=92.6

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r    4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS   83 (307)
Q Consensus         4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS   83 (307)
                      |+|+||+-...=+.+.++.....|++.    +++++.+.+.+               ..    -+-.+|-+|+||+....
T Consensus         1 ktI~ig~~~w~e~~i~a~i~~~~Le~~----G~~V~~~~~~~---------------~~----~~~~al~~G~iDi~~~~   57 (256)
T pfam04069         1 KTIVIGSKNWTEQEILANIAAQLLEAL----GYVVELVGLGS---------------TA----VLFAALASGDIDLYPEE   57 (256)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEEECCC---------------CH----HHHHHHHCCCCCEEEHH
T ss_conf             929992688628999999999999976----98169854787---------------08----99999976997586333


Q ss_pred             C-----CCCCCCCCCCCEEE--EECCCCCCCEEEEECCC-------CCCCCCCCCCE---------E----ECCCCCHHH
Q ss_conf             3-----43211101221012--22365683105665243-------24332456732---------2----047530288
Q gi|254781037|r   84 A-----KDMPTKLLKGLQIS--AYLPREDIRDVFISHTA-------QSLKDLALHSV---------I----GTSSLRRKA  136 (307)
Q Consensus        84 l-----KDlP~~~~~~l~i~--a~~~R~d~rD~lv~~~~-------~~l~~lp~~a~---------I----GTsS~RR~a  136 (307)
                      +     .++-..+.++..+.  .... ...+..|..+.+       ++++||.+.+.         +    |.++.+-..
T Consensus        58 w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~Vp~~~a~~~~i~si~dL~~~~~~~~~~~~~~~~~~~G~~~~~~~~  136 (256)
T pfam04069        58 WTGTTYEAYKKAVEEKLGLLVLGPLG-AGNTYGLAVPKYVAEKPGIKSISDLAKPADDELGFKGEFIGRPDGWGCTRSTE  136 (256)
T ss_pred             CCCCHHHHHHHHHHCCCCEEECCCCC-CCCEEEEEECHHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHH
T ss_conf             06625799998751468738613577-78758999858888356998799972742102488865532788854006789


Q ss_pred             HHHHHHCCCC-CHHHCCCHHHH----HHHHHCCCCCEEEE--EHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC
Q ss_conf             8998423773-10330767999----99863787655630--14545421621122233686673585432078999852
Q gi|254781037|r  137 LLLRWRSDIS-VIDFRGKIETR----LNKLNNNKAHAILL--AYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV  209 (307)
Q Consensus       137 ql~~~~p~l~-~~~iRGNv~TR----l~Kl~~g~~Daiil--A~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~  209 (307)
                      .++..+ +|. +....|+...-    -+.+.+|+.+....  .-.-+.+.++.    ..=++..+.|++.  -+....|+
T Consensus       137 ~~~~~y-Gl~~~~~~~~s~~~~~a~~~~A~~~g~~~v~~~w~p~~~~~~~dl~----~L~Dp~~~~~~~~--~v~~v~~~  209 (256)
T pfam04069       137 GLLKAY-GLDKYELVEGSEAAMDALLYAAIKRGEPDVVYAWTPDWMIKKYDLV----VLEDPKGLFPPAY--NVVPVVRK  209 (256)
T ss_pred             HHHHHC-CCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEE----ECCCCCCCCCCCC--EEEEEECH
T ss_conf             999863-9764012358555459999999984998899963761655427969----9368864579765--58752104


Q ss_pred             ----CCCHHHHHHHHHC
Q ss_conf             ----7612455677623
Q gi|254781037|r  210 ----NNPKAQELVKVIN  222 (307)
Q Consensus       210 ----~d~~i~~il~~In  222 (307)
                          +++.+.++|+++.
T Consensus       210 ~~~~~~P~~~~~l~~~~  226 (256)
T pfam04069       210 GFAEKHPEVAAFLNKLS  226 (256)
T ss_pred             HHHHHCHHHHHHHHHCC
T ss_conf             67777989999998678


No 29 
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=81.62  E-value=4.4  Score=20.85  Aligned_cols=154  Identities=14%  Similarity=0.099  Sum_probs=91.2

Q ss_pred             CCEEEEEC---CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             82899707---988889999999999997408998338999997327411587556748622699999999870983699
Q gi|254781037|r    4 KPFRIGTR---CSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA   80 (307)
Q Consensus         4 ~~i~IgtR---~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA   80 (307)
                      +++++|-=   +..-...+-.-..+.|.+.-   +..+|++...   |                -.++.++|.+|++|+|
T Consensus        27 ~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~l---g~~Ve~~~~~---~----------------y~~~~eal~~g~~Dia   84 (288)
T TIGR03431        27 KELNFGIIPTENASDLKQRWEPLADYLSKKL---GVKVKLFFAT---D----------------YAGVIEGMRFGKVDIA   84 (288)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHHHH---CCCEEEEECC---C----------------HHHHHHHHHCCCCEEE
T ss_conf             3689998069999999999999999999987---8978999689---9----------------9999999985983099


Q ss_pred             EECCCC-CCCCCCCCCEEEEECCCC--C--CCEEEEECCCC---CCCCCCCCCEEECCCCCH-------HHHHHH---HH
Q ss_conf             740343-211101221012223656--8--31056652432---433245673220475302-------888998---42
Q gi|254781037|r   81 VHSAKD-MPTKLLKGLQISAYLPRE--D--IRDVFISHTAQ---SLKDLALHSVIGTSSLRR-------KALLLR---WR  142 (307)
Q Consensus        81 VHSlKD-lP~~~~~~l~i~a~~~R~--d--~rD~lv~~~~~---~l~~lp~~a~IGTsS~RR-------~aql~~---~~  142 (307)
                      .-+--. +-.....+....+...|.  .  .+-++|.+...   +++|| +|-+|+-.++.=       ...|..   ..
T Consensus        85 ~~~p~~yv~a~~~~~~~~la~~~~~~g~~~y~s~iivr~Ds~i~sl~DL-kGk~iaf~~~~StSG~l~P~~~L~~~~g~~  163 (288)
T TIGR03431        85 WYGPSSYAEAYQKANAEAFAIEVNADGSTGYYSVLIVKKDSPIKSLEDL-KGKTFGFVDPNSTSGFLVPSYYLFKKNGIK  163 (288)
T ss_pred             EECCHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHH-CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             9884788998652597488998515888645799999899988877895-798766028741111399999999865997


Q ss_pred             CCCC--CHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCC
Q ss_conf             3773--1033076799999863787655630145454216
Q gi|254781037|r  143 SDIS--VIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLK  180 (307)
Q Consensus       143 p~l~--~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~  180 (307)
                      |+-.  -+..-|+-+.-+.-+.+|++|+.......++++-
T Consensus       164 ~~~~f~~v~~~gshd~~~~aV~~G~~Dag~~~~~~~~~~~  203 (288)
T TIGR03431       164 PKEYFKKVTFSGSHEAAILAVANGTVDAATTNDENLDRMI  203 (288)
T ss_pred             HHHHHHHEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHH
T ss_conf             2545531331578789999998599329983388899999


No 30 
>PRK04694 Maf-like protein; Reviewed
Probab=78.41  E-value=0.79  Score=25.69  Aligned_cols=114  Identities=14%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCHHHCCCHHH-HHHHHHCCCC---CEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf             2204753028889984237731033076799-9998637876---55630145454216211222336866735854320
Q gi|254781037|r  126 VIGTSSLRRKALLLRWRSDISVIDFRGKIET-RLNKLNNNKA---HAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQG  201 (307)
Q Consensus       126 ~IGTsS~RR~aql~~~~p~l~~~~iRGNv~T-Rl~Kl~~g~~---DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQG  201 (307)
                      +++++|+||+..|..+.-++++.+  =|++. +.......+|   -|.-.|.+.+.++.-.+      + +.++=++=| 
T Consensus         3 ILAS~SprR~~lL~~~gi~f~v~~--~didE~~~~~~~p~~~v~~lA~~KA~~~~~~~~~~~------~-~~~VIgaDt-   72 (190)
T PRK04694          3 YLASRSPRRRELLQRLDVPFQTLQ--LDVPEVRAADESPDHYVQRVALEKAHAGLALVQAAD------A-DAIVLGSDT-   72 (190)
T ss_pred             EECCCCHHHHHHHHHCCCCCEEEC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC------C-CCEEEECCE-
T ss_conf             998899999999987899839966--999877687779899999999999999889877538------9-988992382-


Q ss_pred             EEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf             78999852761245567762397888887889999987177648852899999999899999
Q gi|254781037|r  202 AICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYG  263 (307)
Q Consensus       202 aIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~l~a  263 (307)
                         |.+. ++    +++.+=.+.   .++   +..|+.|.|-.|.=+.+.+-+.++......
T Consensus        73 ---vv~~-~g----~ilgKP~~~---~~A---~~~L~~lsGk~H~v~T~v~l~~~~~~~~~~  120 (190)
T PRK04694         73 ---EVVL-GE----RVFGKPVDV---DDA---IAMLRALSGRTHQVLTAVVLVCAQRAPAQA  120 (190)
T ss_pred             ---EEEE-CC----EEECCCCCH---HHH---HHHHHHHCCCEEEEEEEEEEEECCCCEEEE
T ss_conf             ---9998-99----997898999---999---999999789938999999999789836999


No 31 
>PRK12684 transcriptional regulator CysB-like protein; Reviewed
Probab=78.14  E-value=5.7  Score=20.14  Aligned_cols=133  Identities=14%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE--------EEECCCCCCCEEEEECCCCCCCCCCCCCEEECC---CCC
Q ss_conf             999999987098369974034321110122101--------222365683105665243243324567322047---530
Q gi|254781037|r   65 TEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQI--------SAYLPREDIRDVFISHTAQSLKDLALHSVIGTS---SLR  133 (307)
Q Consensus        65 tkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i--------~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTs---S~R  133 (307)
                      ..++.+.|.+|++|+|+.+.   |...++++..        .++.+.+.|   +-.++..++++|.....|...   +.|
T Consensus       131 ~~~~~~~l~~g~~Dl~i~~~---~~~~~~~l~~~~l~~~~~~~v~~~~hp---la~~~~v~l~dL~~~p~I~~~~~~~~r  204 (313)
T PRK12684        131 PTQIAEMVIHDQADLAIATE---AIADYKELVSLPCYQWNHAVVVPPDHP---LLERKPLTLEDLAQYPLITYDDAFAGR  204 (313)
T ss_pred             HHHHHHHHHCCCCCEEECCC---CCCCCCCEEEEEEEECCEEEEECCCCC---CCCCCCCCHHHHCCCCEEECCCCCCHH
T ss_conf             89999999779966550435---777778738998032216899538985---446999999998599989628998589


Q ss_pred             HHHH----HHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEC
Q ss_conf             2888----998423773103307679999986378765563014545421621122233686673585432078999852
Q gi|254781037|r  134 RKAL----LLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHV  209 (307)
Q Consensus       134 R~aq----l~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~  209 (307)
                      +...    -..+.|+..+.  =+|.++=..-+..|- .-.+++.-.++..  .+.--..++.....|   ...+.|..|+
T Consensus       205 ~~i~~~~~~~g~~p~~~~e--~~~~~~i~~~V~~Gl-Gi~ilP~~a~~~~--~~~~L~~lp~~~~~~---~~~~~v~~~k  276 (313)
T PRK12684        205 SKINKAFALRGLKPDIVLE--AIDADVIKTYVELGL-GVGIVADMAFDPE--RDRNLRAIPAGHLFG---SNVTRVALKQ  276 (313)
T ss_pred             HHHHHHHHHCCCCCCEEEE--ECCHHHHHHHHHHCC-CHHHHHHHHHCHH--HCCCEEEEECCCCCC---CEEEEEEEEC
T ss_conf             9999999977998747999--997999999999598-5725599984676--389879997846776---6059999979


Q ss_pred             CC
Q ss_conf             76
Q gi|254781037|r  210 NN  211 (307)
Q Consensus       210 ~d  211 (307)
                      +.
T Consensus       277 ~~  278 (313)
T PRK12684        277 GA  278 (313)
T ss_pred             CC
T ss_conf             88


No 32 
>PRK12683 transcriptional regulator CysB-like protein; Reviewed
Probab=74.49  E-value=7.1  Score=19.51  Aligned_cols=136  Identities=11%  Similarity=0.050  Sum_probs=63.5

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC-------CCCCCCCCCCEEEC---CCCCH
Q ss_conf             999999987098369974034321110122101222365683105665243-------24332456732204---75302
Q gi|254781037|r   65 TEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA-------QSLKDLALHSVIGT---SSLRR  134 (307)
Q Consensus        65 tkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-------~~l~~lp~~a~IGT---sS~RR  134 (307)
                      +.++.+.|.+|++|+|+-+.   |...++++.  .++-..++--+++.+++       .++++|...--|.-   ++.|+
T Consensus       131 ~~~~~~~L~~g~~Dl~i~~~---~~~~~~~l~--~~~l~~~~~~lv~~~~hpla~~~~v~l~dl~~~p~I~~~~~~~~r~  205 (308)
T PRK12683        131 PQEIAEMLLNGEADIGIATE---ALDREPDLV--SFPYYSWHHVVVVPKGHPLTGRENLTLEALAEYPIITYDQGFTGRS  205 (308)
T ss_pred             HHHHHHHHHCCCCCEEECCC---CCCCCCCCE--EEEECCCCEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHH
T ss_conf             69999999779977880666---778887716--8761245158984699953369999999985999896189982999


Q ss_pred             HHHHHHHHCC--CCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf             8889984237--7310330767999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r  135 KALLLRWRSD--ISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN  211 (307)
Q Consensus       135 ~aql~~~~p~--l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d  211 (307)
                      ...-...+-+  .++.---+++++=..-...|--=+ +|+...++..--.. . ..++.+...|.   -.++|-.|++.
T Consensus       206 ~i~~~~~~~g~~p~~~~e~~~~~~i~~~V~~g~Gi~-ilp~~~~~~~~~~~-l-v~l~~~~~~~~---~~~~i~~rk~~  278 (308)
T PRK12683        206 HIDQAFAEAGAVPDIVLTALDADVIKTYVELGMGVG-IVAAMAYDPQRDTG-L-VALDTQHLFEA---NTTRVALRRGA  278 (308)
T ss_pred             HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCHH-HHHHHHHHHHHCCC-E-EEEECCCCCCC---CEEEEEECCCC
T ss_conf             999999977999857999998999999999798470-78999987886099-7-99989788766---17999990968


No 33 
>pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.
Probab=71.27  E-value=8.5  Score=19.03  Aligned_cols=175  Identities=20%  Similarity=0.110  Sum_probs=90.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             88289970798888999999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r    3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH   82 (307)
Q Consensus         3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH   82 (307)
                      .-+|+||+=.|-...+=...+.+..++   +|++++++..-.                    ..++.++|.+|++|+|+-
T Consensus         5 ~G~i~I~~~~~~~~~~lp~~l~~f~~~---~P~i~i~i~~~~--------------------~~~i~~~l~~g~~Di~i~   61 (209)
T pfam03466         5 RGRLRIGAPPTFAAYLLPPLLARFRER---YPDVELELREGD--------------------SEELLDLLAEGELDLAIR   61 (209)
T ss_pred             CEEEEEEEEHHHHHHHHHHHHHHHHHH---CCCCEEEEEECC--------------------CHHHHHHHHCCCCEEEEE
T ss_conf             789999938899999999999999998---889289999898--------------------488999998698148873


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC-------CCCCCCCCCCEEE--CCCCCHHHHH---HHHHCCCCCHHH
Q ss_conf             034321110122101222365683105665243-------2433245673220--4753028889---984237731033
Q gi|254781037|r   83 SAKDMPTKLLKGLQISAYLPREDIRDVFISHTA-------QSLKDLALHSVIG--TSSLRRKALL---LRWRSDISVIDF  150 (307)
Q Consensus        83 SlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-------~~l~~lp~~a~IG--TsS~RR~aql---~~~~p~l~~~~i  150 (307)
                      ....    .++++...-+  -.++.-+++++++       .++++|...--|.  .++..+....   .......+..--
T Consensus        62 ~~~~----~~~~~~~~~l--~~~~~~~~~s~~~~l~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (209)
T pfam03466        62 RGPP----DDPGLEARPL--FEEPLVLVAPPDHPLAAGEPVSLEDLADEPLILLEPGSGLRDLVDRALERAGLRPRVALE  135 (209)
T ss_pred             CCCC----CCCCEEEEEE--EEEEEEEEECCCCHHHCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf             1789----9998089997--624136553367055428975435514665798569987137998778764876302467


Q ss_pred             CCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf             0767999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r  151 RGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN  211 (307)
Q Consensus       151 RGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d  211 (307)
                      =.+.++-+.-+.+|..=|++-....-+-+. ...+. .++.++..|   .-.+++-++++.
T Consensus       136 ~~~~~~~~~lv~~g~Gi~~lp~~~~~~~~~-~~~L~-~i~~~~~~~---~~~~~li~~~~~  191 (209)
T pfam03466       136 VNSLEALLAAVAAGLGIALLPRSAVARELA-DGRLV-VLPLPDPPL---PRPIYLVYRKGR  191 (209)
T ss_pred             ECCHHHHHHHHHHCCEEEECCHHHHHHHHH-CCCEE-EEECCCCCC---CCEEEEEEECCC
T ss_conf             478799999999499999913999998875-89989-995888887---447999998949


No 34 
>PRK00078 Maf-like protein; Reviewed
Probab=68.55  E-value=2.6  Score=22.40  Aligned_cols=29  Identities=31%  Similarity=0.485  Sum_probs=21.6

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCHHHCCCHHH
Q ss_conf             2204753028889984237731033076799
Q gi|254781037|r  126 VIGTSSLRRKALLLRWRSDISVIDFRGKIET  156 (307)
Q Consensus       126 ~IGTsS~RR~aql~~~~p~l~~~~iRGNv~T  156 (307)
                      +++++|+||+..|..+..++.+.  --|||-
T Consensus         4 ILAS~S~~R~~lL~~~g~~f~v~--~~~idE   32 (192)
T PRK00078          4 ILASASERRQELLKRIVEDFQVI--VSDFDE   32 (192)
T ss_pred             EEECCCHHHHHHHHHCCCCCEEE--CCCCCC
T ss_conf             99279999999997189997997--199897


No 35 
>PRK02676 consensus
Probab=63.97  E-value=4.1  Score=21.06  Aligned_cols=34  Identities=18%  Similarity=0.104  Sum_probs=21.8

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHH
Q ss_conf             673220475302888998423773103307679999
Q gi|254781037|r  123 LHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRL  158 (307)
Q Consensus       123 ~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl  158 (307)
                      +.-++|++|+||+..|..+.-++.+.+-  +||-+.
T Consensus         3 ~~iILAS~SprR~~lL~~~g~~f~v~~~--~idE~~   36 (196)
T PRK02676          3 PPFILASASPARRRLLQTVGIDPIVQPS--HFDESQ   36 (196)
T ss_pred             CCEEEECCCHHHHHHHHHCCCCEEEECC--CCCCCC
T ss_conf             9999947999999999977998399789--999888


No 36 
>PRK12679 cbl transcriptional regulator Cbl; Reviewed
Probab=61.74  E-value=13  Score=17.83  Aligned_cols=161  Identities=11%  Similarity=0.027  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC-------CCCCCCCCCCCEEE--CCC-CC
Q ss_conf             999999998709836997403432111012210122236568310566524-------32433245673220--475-30
Q gi|254781037|r   64 FTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT-------AQSLKDLALHSVIG--TSS-LR  133 (307)
Q Consensus        64 Ftkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-------~~~l~~lp~~a~IG--TsS-~R  133 (307)
                      .+.++.+.|.+|++|+++=+.   |...++++  ..++-..++..+++.++       ..++++|..-..|.  .+| .|
T Consensus       130 ~~~~i~~~l~~g~~Dl~i~~~---~~~~~p~l--~~~p~~~~~~~lvvp~~HpLa~~~~vsl~~L~~~plI~~~~g~~~R  204 (316)
T PRK12679        130 TPQEIATLLQNGEADIGIASE---RLSNDPQL--VAFPWFRWHHSLLVPLDHPLTQITPLTLESIAKWPLITYRQGITGR  204 (316)
T ss_pred             CHHHHHHHHHCCCCCEEECCC---CCCCCCCC--EEEEEEECCEEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCHHH
T ss_conf             879999999879988522246---77899760--7998055341356018995124899899998799989508998499


Q ss_pred             HHH-HHHH-HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf             288-8998-42377310330767999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r  134 RKA-LLLR-WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN  211 (307)
Q Consensus       134 R~a-ql~~-~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d  211 (307)
                      +.. ++.. ..=..++.--=++.++=..-...|--=| |++.-..+-..  +..-..++.+.   -..+....+-.|++-
T Consensus       205 ~~id~~f~~~G~~p~i~~e~~~~~~i~~~V~~GlGva-ilp~~a~~~~~--~~~l~~~~~~~---~~~~~~~~~~~~r~~  278 (316)
T PRK12679        205 SRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIG-LVAEQSSGEQE--EKNLIRLDTRH---LFDANTVWLGLKRGQ  278 (316)
T ss_pred             HHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCEE-ECHHHHCCCCC--CCCEEEECCCC---CCCCCEEEEEEECCC
T ss_conf             9999999977999977999998999999999899099-70144507546--89889932634---676653899996787


Q ss_pred             ---CHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             ---12455677623978888878899999
Q gi|254781037|r  212 ---PKAQELVKVINHEDTWDSVNCERAFL  237 (307)
Q Consensus       212 ---~~i~~il~~Ind~~T~~~v~aER~fL  237 (307)
                         ..+.+.+...+..-|...+  ||+++
T Consensus       279 ~l~~~~~~Fi~~~~~~l~~~~~--~~~~~  305 (316)
T PRK12679        279 LQRNYVWRFLELCNAGLSVEDI--KRQVM  305 (316)
T ss_pred             CCHHHHHHHHHHHHCCCCHHHH--HHHHH
T ss_conf             5569999999975202899999--99987


No 37 
>PRK04425 Maf-like protein; Reviewed
Probab=61.58  E-value=4.9  Score=20.56  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=21.5

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHH
Q ss_conf             673220475302888998423773103307679
Q gi|254781037|r  123 LHSVIGTSSLRRKALLLRWRSDISVIDFRGKIE  155 (307)
Q Consensus       123 ~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~  155 (307)
                      -.-+++++|+||+..|..+.-++++  +--|||
T Consensus         5 ~~lILAS~SprR~~LL~~~gi~f~v--~~~~id   35 (196)
T PRK04425          5 LPLVLGTSSVFRREQMERLGIAFQA--ASPDFD   35 (196)
T ss_pred             CCEEECCCCHHHHHHHHHCCCCCEE--ECCCCC
T ss_conf             8799858999999999878999599--769999


No 38 
>pfam05023 Phytochelatin Phytochelatin synthase. Phytochelatin synthase is the enzyme responsible for the synthesis of heavy-metal-binding peptides (phytochelatins) from glutathione and related thiols. The crystal structure of a member of this family shows it to possess a papain fold. The enzyme catalyses the deglycination of a GSH donor molecule. The enzyme contains a catalytic triad of cysteine, histidine and aspartate residues.
Probab=61.58  E-value=2.5  Score=22.49  Aligned_cols=66  Identities=21%  Similarity=0.360  Sum_probs=47.6

Q ss_pred             CCCCCEEEEEEECCCCHH----HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
Q ss_conf             543207899985276124----556776239788888788999998717764885289999999989999
Q gi|254781037|r  197 SPGQGAICIETHVNNPKA----QELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFY  262 (307)
Q Consensus       197 A~gQGaIaIe~r~~d~~i----~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~l~  262 (307)
                      |-++|+-....+.+|.-+    ..+...+++...+..++--|..|..-|+|=.+|||+|-.-.+.-|.|.
T Consensus       102 a~~~g~~~~~~~~~~~s~~~FR~~v~~~~~~~~~~vivny~R~~lgQtG~GHfSPIgaY~~~~D~vLilD  171 (208)
T pfam05023       102 AKCNGAVVKTFHASDLSLDEFRKHLIRCLNDDGRFVIVNYDRKAIGQTGGGHFSPIGGYHEASDSVLILD  171 (208)
T ss_pred             HHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             9857982699977869899999999998389997899977514317778875263102165678499984


No 39 
>TIGR00060 L18_bact ribosomal protein L18; InterPro: IPR004389   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .   This is the ribosomal protein L18 family. The archaebacterial and eukaryotic type rpL18 is not included in this family.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=61.29  E-value=7.1  Score=19.55  Aligned_cols=45  Identities=18%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             EEEEEEECCCCCEEEE------------EEEECCHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             9999998699878999------------99843988899999999999997060563
Q gi|254781037|r  260 YFYGIVLASDGKIFHE------------VSRNGNRCDAINIGRDAAQYIRFISNKNV  304 (307)
Q Consensus       260 ~l~a~v~s~DG~~~i~------------~~~~g~~~~a~~LG~~la~~Ll~~g~k~i  304 (307)
                      +|.++|.++.+...+.            .+..++.+++..+|+.+|++++++|-.++
T Consensus        35 hiYAQvIDd~~~~tlas~Stl~~~l~~~~~~~~n~~~a~~vG~~~A~rl~~kgi~~v   91 (118)
T TIGR00060        35 HIYAQVIDDVKQVTLASASTLEKKLKEQLKSTGNKDAAKKVGKLVAERLIKKGINDV   91 (118)
T ss_pred             CEEEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             178999985888478731556688776510378988999999999999997277226


No 40 
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715    L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesis  ATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate.    Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm.
Probab=60.67  E-value=3.9  Score=21.20  Aligned_cols=129  Identities=17%  Similarity=0.198  Sum_probs=68.1

Q ss_pred             CCE-EECCCCCHHHHH--HHHHCCCCCHHHCCCHHHHHHHHHC----CCCCEEEEEHH-HHHHCCCCCCCCCCCCHHHCC
Q ss_conf             732-204753028889--9842377310330767999998637----87655630145-454216211222336866735
Q gi|254781037|r  124 HSV-IGTSSLRRKALL--LRWRSDISVIDFRGKIETRLNKLNN----NKAHAILLAYA-GIKRLKKEKVIKEILNIEDFP  195 (307)
Q Consensus       124 ~a~-IGTsS~RR~aql--~~~~p~l~~~~iRGNv~TRl~Kl~~----g~~DaiilA~A-gl~RL~l~~~i~~~l~~~~~~  195 (307)
                      |+. +||+-.|=+-+.  ...+-.+.+.-.-|+=..-|..+-+    |+-+|+++..- .=.||.-  +-.+.+     -
T Consensus       207 g~~~~GTGGM~sK~~AA~~A~~~Gv~v~i~~g~~P~~i~~~~~hhfyg~~~GT~F~a~~~~~~L~~--rk~Wi~-----~  279 (379)
T TIGR01027       207 GSSKVGTGGMRSKIEAARLATRAGVPVIIASGSKPEKIADALEHHFYGAPVGTVFEAQEARRKLRA--RKQWIA-----F  279 (379)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHH--HHHHHH-----H
T ss_conf             788756646789999999998689958994488978999999974037787744335776502678--999998-----4


Q ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE----ECCEEEEEEEEEC---C
Q ss_conf             85432078999852761245567762397888887889999987177648852899999----9998999999986---9
Q gi|254781037|r  196 PSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYC----KGSTLYFYGIVLA---S  268 (307)
Q Consensus       196 PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i----~~~~l~l~a~v~s---~  268 (307)
                      -++-+|.|-|---...    .+.+                     +|.--.|.|+..--    .++.+    .+.+   +
T Consensus       280 ~~~~~G~i~vD~GA~~----Al~~---------------------~G~SLLp~Gi~~V~G~F~~GdvV----~i~~qrl~  330 (379)
T TIGR01027       280 ASEPKGKITVDAGAEE----ALKE---------------------RGKSLLPAGIVEVEGNFSRGDVV----EILNQRLP  330 (379)
T ss_pred             CCCCCCEEEECHHHHH----HHHH---------------------CCCCCCCCCEEEEEECCCCCCEE----EEECCCCC
T ss_conf             3776746887525899----9983---------------------78711431136662014764569----86125340


Q ss_pred             CC-CEEEEEEEECCHHHHHHH
Q ss_conf             98-789999984398889999
Q gi|254781037|r  269 DG-KIFHEVSRNGNRCDAINI  288 (307)
Q Consensus       269 DG-~~~i~~~~~g~~~~a~~L  288 (307)
                      +| ...=+.....+.++-+.+
T Consensus       331 ~G~~~iG~G~v~Y~S~eL~~i  351 (379)
T TIGR01027       331 EGKQLIGRGLVNYSSDELEKI  351 (379)
T ss_pred             CCCCEECCCCCCCCHHHHHHH
T ss_conf             126201010245698999998


No 41 
>PRK12681 cysB transcriptional regulator CysB; Reviewed
Probab=59.80  E-value=14  Score=17.62  Aligned_cols=188  Identities=12%  Similarity=0.069  Sum_probs=83.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r    5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA   84 (307)
Q Consensus         5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl   84 (307)
                      .++||+=.|.-.-+- -.+.....+.  +|++++++..    |                -..++.+.|.+|++|+|+=+-
T Consensus        94 ~L~Ia~~~t~a~~~L-P~~i~~F~~~--~P~v~l~l~~----~----------------~~~~i~~~l~~g~~DlaI~~e  150 (324)
T PRK12681         94 SLYIATTHTQARYAL-PPVIKGFIKR--YPRVSLHMHQ----G----------------SPTQIAEAAAKGEADFAIATE  150 (324)
T ss_pred             EEEEEECHHHHHHHH-HHHHHHHHHH--CCCCCEEEEE----C----------------CHHHHHHHHHCCCCCCCCCCC
T ss_conf             499985358888772-5999999987--8998446531----7----------------879999999879987231246


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCEEEEEC-------CCCCCCCCCCCCEE--ECC-CCCHHHH----HHHHHCCCCCHHH
Q ss_conf             43211101221012223656831056652-------43243324567322--047-5302888----9984237731033
Q gi|254781037|r   85 KDMPTKLLKGLQISAYLPREDIRDVFISH-------TAQSLKDLALHSVI--GTS-SLRRKAL----LLRWRSDISVIDF  150 (307)
Q Consensus        85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~-------~~~~l~~lp~~a~I--GTs-S~RR~aq----l~~~~p~l~~~~i  150 (307)
                         +..+.+++...  +-..+++-+++.+       +..++++|..-..|  ..+ +.|+...    -..+.|++.+.  
T Consensus       151 ---~~~~~~dl~~~--P~~~~~~~vvvp~~HPLa~~~~itl~dL~~~plI~~~~g~~~R~~id~~f~~~g~~P~iv~e--  223 (324)
T PRK12681        151 ---ALHLYDDLIML--PCYHWNRSVVVPPDHPLAKKKKLTIEELAQYPLVTYVFGFTGRSELDTAFNRAGLTPRIVFT--  223 (324)
T ss_pred             ---CCCCCCCCEEE--EEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEE--
T ss_conf             ---66668874686--40003222457999965579999999986998596149982999999999988997607999--


Q ss_pred             CCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC---CHHHHHHHHHCCHHHH
Q ss_conf             0767999998637876556301454542162112223368667358543207899985276---1245567762397888
Q gi|254781037|r  151 RGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN---PKAQELVKVINHEDTW  227 (307)
Q Consensus       151 RGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d---~~i~~il~~Ind~~T~  227 (307)
                      =.+.++=..-+..| ..-.|+|.-..+=.  .+..-..++.+.+.   ......|-.|++-   ..+...+..+...-|+
T Consensus       224 ~~~~~~I~~~V~~G-lGV~ilp~mA~~~~--~d~~l~~~~~~~~f---~~~~t~i~~r~g~~l~~~~~~Fi~~~~p~l~~  297 (324)
T PRK12681        224 ATDADVIKTYVRLG-LGVGVIASMAVDPV--ADPDLVAIDASHLF---AHSTTKIGFRRGTFLRSYMYDFIERFAPHLTR  297 (324)
T ss_pred             ECCHHHHHHHHHHC-CEEEECHHHHCCCC--CCCCEEEEECCCCC---CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCH
T ss_conf             89899999999959-91397035551965--57881784365567---77647999979971579999999986120489


Q ss_pred             H
Q ss_conf             8
Q gi|254781037|r  228 D  228 (307)
Q Consensus       228 ~  228 (307)
                      .
T Consensus       298 ~  298 (324)
T PRK12681        298 D  298 (324)
T ss_pred             H
T ss_conf             9


No 42 
>PRK02478 Maf-like protein; Reviewed
Probab=58.19  E-value=6.1  Score=19.98  Aligned_cols=26  Identities=15%  Similarity=0.302  Sum_probs=18.0

Q ss_pred             HHHHHHHCCCCCCCEEEEEEEECCEE
Q ss_conf             99998717764885289999999989
Q gi|254781037|r  234 RAFLAELDGSCKSAIAGFAYCKGSTL  259 (307)
Q Consensus       234 R~fL~~L~GgC~~PIGa~A~i~~~~l  259 (307)
                      +.+|+.|-|..|.=+.+.+-+.+++.
T Consensus        96 ~~mL~~lsGk~H~v~T~v~l~~~~~~  121 (199)
T PRK02478         96 RRHLQKLSGKTHQLNSAVVLVRDGKV  121 (199)
T ss_pred             HHHHHHHCCCEEEEEEEEEEEECCEE
T ss_conf             99999976983999989999989989


No 43 
>PRK09508 leuO leucine transcriptional activator; Reviewed
Probab=57.77  E-value=15  Score=17.40  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=36.2

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r    4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS   83 (307)
Q Consensus         4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS   83 (307)
                      +.++||.-. .++..-.-.+...+.+.  +|++.+++...                    ...++.+.|.+|++|+|+-+
T Consensus       112 ~~~~i~~~~-~~~~~llp~ll~~~~~~--~P~v~l~~~~~--------------------~~~~~~~~L~~g~iDl~I~~  168 (314)
T PRK09508        112 RVFNLCICS-PLDNRLASQIYNRIEQI--APNIHLVFKSS--------------------LNQNIEHQLRYQETEFVISY  168 (314)
T ss_pred             CEEEEEECC-HHHHHHHHHHHHHHHHH--CCCCEEEEEEC--------------------CCHHHHHHHHCCCCCEEEEC
T ss_conf             369999630-78999999999999986--89977999857--------------------70649999976995299967


Q ss_pred             C
Q ss_conf             3
Q gi|254781037|r   84 A   84 (307)
Q Consensus        84 l   84 (307)
                      .
T Consensus       169 ~  169 (314)
T PRK09508        169 E  169 (314)
T ss_pred             C
T ss_conf             8


No 44 
>PRK00238 consensus
Probab=57.10  E-value=5.3  Score=20.36  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=14.0

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCHH
Q ss_conf             220475302888998423773103
Q gi|254781037|r  126 VIGTSSLRRKALLLRWRSDISVID  149 (307)
Q Consensus       126 ~IGTsS~RR~aql~~~~p~l~~~~  149 (307)
                      +.+++|+||+..|..+.-++.+.+
T Consensus         5 ILAS~Sp~R~~lL~~~gi~f~~~~   28 (198)
T PRK00238          5 YLASGSPRRRELLTQIGVPFSVLS   28 (198)
T ss_pred             EECCCCHHHHHHHHHCCCCCEEEE
T ss_conf             983899999999987899829983


No 45 
>PRK04719 consensus
Probab=56.88  E-value=5.6  Score=20.18  Aligned_cols=26  Identities=12%  Similarity=0.234  Sum_probs=18.7

Q ss_pred             HHHHHHHCCCCCCCEEEEEEEECCEE
Q ss_conf             99998717764885289999999989
Q gi|254781037|r  234 RAFLAELDGSCKSAIAGFAYCKGSTL  259 (307)
Q Consensus       234 R~fL~~L~GgC~~PIGa~A~i~~~~l  259 (307)
                      +..|+.|.|.-|.=+.+.|-+.++..
T Consensus        92 ~~~L~~lsGk~H~v~T~v~i~~~~~~  117 (188)
T PRK04719         92 KRMLLKLSGRQHQVMTAVTVVSREKQ  117 (188)
T ss_pred             HHHHHHHCCCCEEEEEEEEEEECCEE
T ss_conf             99999857996799999999989978


No 46 
>PRK01946 consensus
Probab=56.61  E-value=6.2  Score=19.91  Aligned_cols=26  Identities=31%  Similarity=0.377  Sum_probs=20.1

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCHHH
Q ss_conf             32204753028889984237731033
Q gi|254781037|r  125 SVIGTSSLRRKALLLRWRSDISVIDF  150 (307)
Q Consensus       125 a~IGTsS~RR~aql~~~~p~l~~~~i  150 (307)
                      -++|++|+||+..|..+..++.+...
T Consensus        11 iILAS~Sp~R~~lL~~~gi~f~v~~~   36 (195)
T PRK01946         11 IILASGSPRRKELLSGLGIDFEVRTL   36 (195)
T ss_pred             EEEECCCHHHHHHHHHCCCCCEEECC
T ss_conf             99978999999999977999789438


No 47 
>PRK00234 Maf-like protein; Reviewed
Probab=56.58  E-value=5.7  Score=20.14  Aligned_cols=107  Identities=15%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCC-CCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEE
Q ss_conf             32204753028889984237731033076799999863787-65563014545421621122233686673585432078
Q gi|254781037|r  125 SVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNK-AHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAI  203 (307)
Q Consensus       125 a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~-~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaI  203 (307)
                      -+.+++|+||+..|..+.-++++.+  -+||-..   ..++ ..-++...|-.+-..    +....+ +.++=++-|  |
T Consensus         4 iILAS~SprR~~lL~~~gi~f~v~~--~~idE~~---~~~~~p~~~~~~lA~~KA~~----v~~~~~-~~~VIgaDt--v   71 (192)
T PRK00234          4 LLLASSSPYRRELLARLRLPFTCAS--PDIDESH---RPDESAEELVRRLARQKAEA----LAGSHP-QHLIIGSDQ--V   71 (192)
T ss_pred             EEECCCCHHHHHHHHHCCCCCEEEC--CCCCCCC---CCCCCHHHHHHHHHHHHHHH----HHHHCC-CCEEEECCE--E
T ss_conf             8986899999999997799949978--9998888---99989999999999999986----476489-867873586--9


Q ss_pred             EEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             99985276124556776239788888788999998717764885289999999
Q gi|254781037|r  204 CIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKG  256 (307)
Q Consensus       204 aIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~  256 (307)
                      . .|  ++    +++.+=.+.+   +   -|..|+.|.|..|.=+.+.|-+..
T Consensus        72 v-~~--~g----~il~KP~~~~---~---A~~~L~~lsGk~h~v~Tgv~v~~~  111 (192)
T PRK00234         72 A-VL--GE----QILGKPHTFE---R---ACEQLLAASGQSVTFLTGLALLNS  111 (192)
T ss_pred             E-EE--CC----EEECCCCCHH---H---HHHHHHHHCCCEEEEEEEEEEEEC
T ss_conf             9-98--99----9977999999---9---999999828995999987999989


No 48 
>PRK00648 Maf-like protein; Reviewed
Probab=56.34  E-value=6.1  Score=19.95  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=52.1

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEE
Q ss_conf             32204753028889984237731033076799999863787655630145454216211222336866735854320789
Q gi|254781037|r  125 SVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAIC  204 (307)
Q Consensus       125 a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIa  204 (307)
                      -+++++|+||+..|..+.-++.+.+-. .++..+.+-.+  -..++...|-.+-    ..+.....++.++=++=|  ++
T Consensus         5 iILAS~S~~R~~lL~~~gi~f~v~~~~-~dEe~~~~~~~--p~~~~~~lA~~Ka----~~v~~~~~~~~~vI~aDt--vv   75 (191)
T PRK00648          5 IVLASSSPRRKEILEGFRIPFEVIPSP-FVEESYPYSLD--PEEYTLELARLKA----EAVRSDHFPDELIITADT--IV   75 (191)
T ss_pred             EEEECCCHHHHHHHHHCCCCCEEECCC-CCCCCCCCCCC--HHHHHHHHHHHHH----HHHHHHHCCCCEEEEECE--EE
T ss_conf             999689999999999779995997899-98776777899--9999999999999----999972189988999684--99


Q ss_pred             EEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf             99852761245567762397888887889999987177648852899999999899
Q gi|254781037|r  205 IETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLY  260 (307)
Q Consensus       205 Ie~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~  260 (307)
                       .|  ++    +++.+=   .+..++   |.+|+.|.|..|.-+.+.|-+.++...
T Consensus        76 -~~--~g----~i~~KP---~~~~eA---~~~L~~lsGk~h~v~T~v~v~~~~~~~  118 (191)
T PRK00648         76 -WY--DG----KVLGKP---KSEEEA---IEMLKTLSGKTHEVITGVCIIHNGKLL  118 (191)
T ss_pred             -EE--CC----EEECCC---CCHHHH---HHHHHHHCCCCCEEEEEEEEEECCEEE
T ss_conf             -98--99----996797---659999---999999789960999999999899999


No 49 
>PRK03797 consensus
Probab=55.90  E-value=3.9  Score=21.19  Aligned_cols=109  Identities=17%  Similarity=0.276  Sum_probs=51.6

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf             22047530288899842377310330767999998637876556301454542162112223368667358543207899
Q gi|254781037|r  126 VIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICI  205 (307)
Q Consensus       126 ~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaI  205 (307)
                      +.+++|+||+..|..+   +.|.-+--++|.+...   .+--..++.-|-.+=.    .+...++.+ ++=++=|  + |
T Consensus         3 ILAS~Sp~R~~lL~~~---i~f~v~~~~idE~~~~---~~p~~~~~~lA~~KA~----~v~~~~~~~-~VIgaDt--v-v   68 (186)
T PRK03797          3 ILASSSPRRREILSRF---FEIKVYPSNVSERSSI---KDPREHALDLARKKAL----EVYSRFPKA-TIIAADT--I-V   68 (186)
T ss_pred             EECCCCHHHHHHHHCC---CCCEEECCCCCCCCCC---CCHHHHHHHHHHHHHH----HHHHHCCCC-EEEEECE--E-E
T ss_conf             9868999999999757---9979978998988888---8999999999999999----999878998-6999862--9-9


Q ss_pred             EEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf             9852761245567762397888887889999987177648852899999999899
Q gi|254781037|r  206 ETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLY  260 (307)
Q Consensus       206 e~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~  260 (307)
                      .|   |.+   ++.+   +.+..++   +.+|+.|.|.-|.=+.+.|-+.++.+.
T Consensus        69 ~~---~g~---i~gK---P~~~~eA---~~~L~~lsGk~h~v~T~v~i~~~~~~~  111 (186)
T PRK03797         69 SL---GGK---ILGK---PKNEEEA---RKMLKTLSGKVHLVITGYCIIHNGKII  111 (186)
T ss_pred             EE---CCE---EECC---CCCHHHH---HHHHHHHCCCCEEEEEEEEEEECCEEE
T ss_conf             98---999---9679---9999999---999999789926999999999999999


No 50 
>PRK03442 consensus
Probab=55.87  E-value=5.8  Score=20.10  Aligned_cols=25  Identities=28%  Similarity=0.224  Sum_probs=17.8

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCHH
Q ss_conf             3220475302888998423773103
Q gi|254781037|r  125 SVIGTSSLRRKALLLRWRSDISVID  149 (307)
Q Consensus       125 a~IGTsS~RR~aql~~~~p~l~~~~  149 (307)
                      -+.+++|+||+..|..+.-++.+.+
T Consensus         4 lILAS~SprR~~lL~~~g~~f~v~~   28 (213)
T PRK03442          4 LVLGSASPGRLKVLRQAGIDPLVVV   28 (213)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             8986899999999997799819974


No 51 
>PRK00884 Maf-like protein; Reviewed
Probab=54.88  E-value=6.3  Score=19.86  Aligned_cols=31  Identities=16%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHH
Q ss_conf             322047530288899842377310330767999
Q gi|254781037|r  125 SVIGTSSLRRKALLLRWRSDISVIDFRGKIETR  157 (307)
Q Consensus       125 a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TR  157 (307)
                      -++|++|+||+..|..+.-++.+.+  -|||-.
T Consensus         4 iILAS~SprR~~lL~~~gi~f~v~~--~~idE~   34 (194)
T PRK00884          4 LILASTSPYRRALLEKLQLPFECAA--PEVDET   34 (194)
T ss_pred             EEECCCCHHHHHHHHHCCCCCEEEC--CCCCCC
T ss_conf             8997899999999987899958979--999988


No 52 
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=54.59  E-value=6.1  Score=19.97  Aligned_cols=110  Identities=17%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf             22047530288899842377310330767999998637876556301454542162112223368667358543207899
Q gi|254781037|r  126 VIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICI  205 (307)
Q Consensus       126 ~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaI  205 (307)
                      ++|++|+||+..|+.+.-++.+.  --|||-+.-+-.+..--+.-+|.+  +-..    +...++.+.++=++=|  + +
T Consensus         2 ILaS~S~~R~~lL~~~gi~f~~~--~~~iDE~~~~~~~p~~~~~~lA~~--KA~~----v~~~~~~~~iiI~aDt--v-v   70 (180)
T cd00555           2 ILASASPRRRELLEQLGIPFEVV--PSDIDETPIKGESPEDYVLRLAEA--KAEA----VAARLPPDALVIGADT--V-V   70 (180)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEE--CCCCCCCCCCCCCHHHHHHHHHHH--HHHH----HHHHCCCCCEEEECCE--E-E
T ss_conf             87779999999999779984997--899998988899999999999999--9999----9974789988998180--9-9


Q ss_pred             EEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCE
Q ss_conf             98527612455677623978888878899999871776488528999999998
Q gi|254781037|r  206 ETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGST  258 (307)
Q Consensus       206 e~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~  258 (307)
                      .|  ++ +   ++.   -+.+..++   +.+|+.+.|-=|.=+.+.+-+.++.
T Consensus        71 ~~--~g-~---i~~---KP~~~~~A---~~~L~~lsgk~h~v~T~v~v~~~~~  111 (180)
T cd00555          71 VL--DG-R---ILG---KPKDREEA---REMLKRLSGRTHEVYTGVALIDPGG  111 (180)
T ss_pred             EE--CC-E---ECC---CCCCHHHH---HHHHHHHCCCCEEEEEEEEEEECCC
T ss_conf             98--99-9---847---98769999---9967753799479999999998996


No 53 
>pfam02642 consensus
Probab=54.38  E-value=17  Score=17.04  Aligned_cols=100  Identities=17%  Similarity=0.165  Sum_probs=70.9

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE--EEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHH--
Q ss_conf             999999987098369974034321110122101--2223656831056652432433245673220475302888998--
Q gi|254781037|r   65 TEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQI--SAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLR--  140 (307)
Q Consensus        65 tkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i--~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~--  140 (307)
                      +.+|.+.-++|+.|+..=|.-=.|...++=..+  ++-+-|. ..=.+|+++..+   + ++.+|+.+...-.|.++.  
T Consensus        37 IetLN~~A~~g~~dvskiS~~ayp~i~d~Y~lL~~G~alG~G-~GPlvva~~~~~---l-~~~~iAvPG~~TTA~lL~~l  111 (259)
T pfam02642        37 IETLNREALKNRYEVSAISAHLYPLIADKYALLPVGTSLGYG-YGPIVVSKKEVS---L-KLKRLATPGEHTTAHLLCKL  111 (259)
T ss_pred             HHHHHHHHHCCCCCEEEECHHHHHHHHHCEEEEECHHHCCCC-CCCEEEECCCCC---C-CCCEEECCCHHHHHHHHHHH
T ss_conf             999999998189997887597788686068875332230488-687478547777---7-89989787736799999998


Q ss_pred             HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEE
Q ss_conf             4237731033076799999863787655630
Q gi|254781037|r  141 WRSDISVIDFRGKIETRLNKLNNNKAHAILL  171 (307)
Q Consensus       141 ~~p~l~~~~iRGNv~TRl~Kl~~g~~Daiil  171 (307)
                      ++|+.+++++  +.+.=+..+.+|++||-++
T Consensus       112 ~~~~~~~v~~--~FdeI~~aV~~G~vDaGvi  140 (259)
T pfam02642       112 YYPDAELVPM--PFDRIIQAVLEGKVDAGAL  140 (259)
T ss_pred             HCCCCEEEEE--EHHHHHHHHHCCCCCCEEE
T ss_conf             5588759995--6899899997599871079


No 54 
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=53.69  E-value=18  Score=16.97  Aligned_cols=166  Identities=14%  Similarity=0.153  Sum_probs=94.6

Q ss_pred             CCEEEEECC----CHHHHHHHHHHHH-HHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCE
Q ss_conf             828997079----8888999999999-99974089983389999973274115875567486226999999998709836
Q gi|254781037|r    4 KPFRIGTRC----SPLALAHAFETRS-SLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEID   78 (307)
Q Consensus         4 ~~i~IgtR~----S~LAl~Qa~~v~~-~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iD   78 (307)
                      ++++||.-.    -|+.++|-.=.-+ -.++ |   +++++++.+..-.                   +--+++..|++|
T Consensus         2 ~~~kig~S~w~Gw~Pw~~A~e~GifkKw~~k-~---Gi~Vel~~f~dy~-------------------~si~a~~AG~~D   58 (328)
T TIGR03427         2 DKFKVCWSIYAGWMPWGYAAQQGIVDKWADK-Y---GITIEVVQINDYV-------------------ESINQYTAGKFD   58 (328)
T ss_pred             CCEEEEEECCCCHHHHHHHHHCCCHHHHHHH-C---CCEEEEEECCCHH-------------------HHHHHHHCCCCC
T ss_conf             9339997268538889999974926555887-5---9737999828848-------------------889999758977


Q ss_pred             EEEECCCCCC-CCCCCCCEEEE--ECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHH--------HCCCCC
Q ss_conf             9974034321-11012210122--236568310566524324332456732204753028889984--------237731
Q gi|254781037|r   79 CAVHSAKDMP-TKLLKGLQISA--YLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRW--------RSDISV  147 (307)
Q Consensus        79 iAVHSlKDlP-~~~~~~l~i~a--~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~--------~p~l~~  147 (307)
                      -+.-..=|.= ..-..|..+.+  +..--+-.|++|.+..+++.|| +|-+||....-=..+++..        ..|+++
T Consensus        59 g~~~Tn~Dal~i~aa~Gvd~~~vlv~D~SnG~D~Ivak~~~slaDL-KGKkVav~~~svshyLL~rALe~aGLs~~DV~v  137 (328)
T TIGR03427        59 GCTMTNMDALTIPAAGGVDTTALIVGDFSNGNDGIVLKGGKSLADL-KGQKVNLVELSVSHYLLARALESVGLSEKDVKV  137 (328)
T ss_pred             EEEEECCHHHHHHHCCCCCEEEEEEECCCCCCCEEEECCCCCHHHH-CCCEEECCCCCCHHHHHHHHHHHCCCCHHHEEE
T ss_conf             4776261566513117997289998525788747997899887884-898883247870799999999986998899078


Q ss_pred             HHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCC
Q ss_conf             033076799999863787655630145454216211222336866735
Q gi|254781037|r  148 IDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFP  195 (307)
Q Consensus       148 ~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~  195 (307)
                      +++.-  +.-..-+..|+.||.+-=.-=+..+.-..-...+|+..+++
T Consensus       138 Vn~~~--~d~~aAf~sg~VdA~vTWeP~ls~i~~~~ga~~iF~Ss~iP  183 (328)
T TIGR03427       138 VNTSD--ADIVAAFITKDVTAVVTWNPQLSEIKAQPGANEVFDSSQIP  183 (328)
T ss_pred             EECCC--HHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCEEEECCCCC
T ss_conf             84795--46999974799878999785689997289982644257788


No 55 
>PRK00148 Maf-like protein; Reviewed
Probab=53.57  E-value=6.5  Score=19.77  Aligned_cols=32  Identities=19%  Similarity=0.099  Sum_probs=18.5

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHH
Q ss_conf             3220475302888998423773103307679999
Q gi|254781037|r  125 SVIGTSSLRRKALLLRWRSDISVIDFRGKIETRL  158 (307)
Q Consensus       125 a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl  158 (307)
                      -++|++|+||+..|..+.-++.+.+  =+||-+.
T Consensus         4 lILAS~Sp~R~~lL~~~g~~f~v~~--~~idE~~   35 (195)
T PRK00148          4 LVLASASPARLKLLRLAGIPPLVVV--SHVDEDA   35 (195)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEEC--CCCCCCC
T ss_conf             8985799999999997799849978--9989898


No 56 
>PRK03415 consensus
Probab=52.21  E-value=7.5  Score=19.37  Aligned_cols=27  Identities=15%  Similarity=0.324  Sum_probs=18.4

Q ss_pred             HHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf             999987177648852899999999899
Q gi|254781037|r  234 RAFLAELDGSCKSAIAGFAYCKGSTLY  260 (307)
Q Consensus       234 R~fL~~L~GgC~~PIGa~A~i~~~~l~  260 (307)
                      |..|+.|.|.-|.=+.+.|-.+++.+.
T Consensus        90 ~~~L~~lsG~~H~v~T~v~l~~~~~~~  116 (197)
T PRK03415         90 AQMLRALSGQTHQVMTAVALADSQHIL  116 (197)
T ss_pred             HHHHHHHCCCCEEEEEEEEEEECCCEE
T ss_conf             999999769952999999998299489


No 57 
>PRK02141 Maf-like protein; Reviewed
Probab=51.31  E-value=9.1  Score=18.84  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=22.9

Q ss_pred             CCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHH
Q ss_conf             56732204753028889984237731033076799
Q gi|254781037|r  122 ALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIET  156 (307)
Q Consensus       122 p~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~T  156 (307)
                      |+--+++++|+||+..|..+.-++.+.+-  +||-
T Consensus         8 ~pklILAS~SprR~eLL~~~Gi~f~v~~~--~iDE   40 (206)
T PRK02141          8 PPRLILASSSRYRRELLERLRLPFDVVSP--DIDE   40 (206)
T ss_pred             CCCEEEECCCHHHHHHHHHCCCCCEEECC--CCCC
T ss_conf             99799937999999999878999599858--9998


No 58 
>PRK04056 Maf-like protein; Reviewed
Probab=50.73  E-value=8.3  Score=19.11  Aligned_cols=114  Identities=10%  Similarity=0.067  Sum_probs=50.4

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf             22047530288899842377310330767999998637876556301454542162112223368667358543207899
Q gi|254781037|r  126 VIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICI  205 (307)
Q Consensus       126 ~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaI  205 (307)
                      +.+++|+||+..|....-++.+  +.-|||-..-+-...  -..+...|-.+-..    +...++.+..+=++=|  + |
T Consensus         3 ILAS~SprR~~lL~~~gi~f~~--~~~~iDE~~~~~~~p--~~~v~~la~~Ka~~----~~~~~~~~~~vi~aDt--v-v   71 (180)
T PRK04056          3 ILASSSPTRANLLKEAGIEFEQ--KSVDFDEESIKKTSP--KEFVYLAVKGKLEQ----ALKLYGNNCNLLVADS--V-V   71 (180)
T ss_pred             EECCCCHHHHHHHHHCCCCCEE--ECCCCCCCCCCCCCH--HHHHHHHHHHHHHH----HHHHCCCCCEEEEECE--E-E
T ss_conf             9978999999999977999699--718999988777899--99999999999999----9987199986999786--9-9


Q ss_pred             EEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
Q ss_conf             985276124556776239788888788999998717764885289999999989999
Q gi|254781037|r  206 ETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFY  262 (307)
Q Consensus       206 e~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~l~  262 (307)
                      .|  ++    +++.   -+.+..+  | +.+|+.|.|.=|.=+.+.+...++.....
T Consensus        72 ~~--~g----~ilg---KP~~~~~--A-~~~L~~lsGk~h~v~T~v~~~~~~~~~~~  116 (180)
T PRK04056         72 SC--DG----KILR---KAKDKEE--A-REMLKLQSGNEISVLTCMIFISPEKEVLD  116 (180)
T ss_pred             EE--CC----EEEC---CCCCHHH--H-HHHHHHHCCCEEEEEEEEEEECCCEEEEE
T ss_conf             98--99----9987---9999999--9-99999868993999999999729989999


No 59 
>PRK00032 Maf-like protein; Reviewed
Probab=50.03  E-value=8.3  Score=19.11  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=15.5

Q ss_pred             HHHHHHCCCCCCCEEEEEEEECCEE
Q ss_conf             9998717764885289999999989
Q gi|254781037|r  235 AFLAELDGSCKSAIAGFAYCKGSTL  259 (307)
Q Consensus       235 ~fL~~L~GgC~~PIGa~A~i~~~~l  259 (307)
                      .+|+.|.|--|.=+.+.+-+.++++
T Consensus        91 ~~L~~lsGk~h~v~T~v~v~~~~~~  115 (189)
T PRK00032         91 AMLAALSGRTHQVMTAVALADSQRI  115 (189)
T ss_pred             HHHHHHCCCCEEEEEEEEEEECCEE
T ss_conf             9999858993899989999989989


No 60 
>PRK12682 transcriptional regulator CysB-like protein; Reviewed
Probab=49.93  E-value=20  Score=16.59  Aligned_cols=134  Identities=14%  Similarity=0.089  Sum_probs=62.2

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC-------CCCCCCCCCCCEEEC--CCCCHH
Q ss_conf             99999998709836997403432111012210122236568310566524-------324332456732204--753028
Q gi|254781037|r   65 TEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT-------AQSLKDLALHSVIGT--SSLRRK  135 (307)
Q Consensus        65 tkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-------~~~l~~lp~~a~IGT--sS~RR~  135 (307)
                      +.++.+.|.+|++|+|+-+-   |....++  +.+.+-..++--+++.++       ..+++||.....|.-  ++.-|.
T Consensus       131 ~~~~~~~l~~g~~Dl~i~~~---~~~~~~~--l~~~~l~~~~~~~v~~~~h~la~~~~i~~~dL~~~p~I~~~~~~~~r~  205 (309)
T PRK12682        131 PDEIAQMVISGEADIGIATE---SLDDDPD--LVTLPCYDWTHAVIVPSDHPLAQKERITLEDLAEYPLITYHPGFTGRS  205 (309)
T ss_pred             HHHHHHHHHCCCCCHHHHHC---CCCCCCC--EEEEEEECCCEEEEECCCCHHHCCCCCCHHHHCCCCEEEECCCCCHHH
T ss_conf             29999999769976456507---7778988--089993315236761699721149999999982899797279986799


Q ss_pred             HHHHH-----HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECC
Q ss_conf             88998-----4237731033076799999863787655630145454216211222336866735854320789998527
Q gi|254781037|r  136 ALLLR-----WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVN  210 (307)
Q Consensus       136 aql~~-----~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~  210 (307)
                      .+-..     +.|+.  .--=.|+++-+.-...|--=+ +++.-..+... ...... ++++...|   +-.+.+..|++
T Consensus       206 ~~~~~~~~~g~~p~~--~~~~~~~~~~~~~v~~G~Gi~-~lp~~~~~~~~-~~~Lv~-v~~~~~~~---~~~~~l~~rk~  277 (309)
T PRK12682        206 AIDKAFAAAGLQPDI--VLEAIDSDVIKTYVRLGLGVG-IIAEMAYRPDR-DGDLVA-LPAGHLFG---PNTAWVAVKRG  277 (309)
T ss_pred             HHHHHHHHCCCCCCE--EEEECCHHHHHHHHHHCCEEE-HHHHHHHHHHH-CCCEEE-EECCCCCC---CCEEEEEEECC
T ss_conf             999999977999626--999998999999999599424-22899833764-799899-97988777---61799999696


Q ss_pred             C
Q ss_conf             6
Q gi|254781037|r  211 N  211 (307)
Q Consensus       211 d  211 (307)
                      .
T Consensus       278 ~  278 (309)
T PRK12682        278 A  278 (309)
T ss_pred             C
T ss_conf             6


No 61 
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional
Probab=49.50  E-value=21  Score=16.55  Aligned_cols=134  Identities=17%  Similarity=0.135  Sum_probs=63.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r    5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA   84 (307)
Q Consensus         5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl   84 (307)
                      +++||+-.|..+-.-.--+...+.+.  +|++++++..-                    .+.++.+.|.+|++|+|+-..
T Consensus        92 ~l~ig~~p~~~~~~l~~p~l~~f~~~--~P~v~v~l~~~--------------------~~~~l~~~l~~g~~Dlai~~~  149 (305)
T PRK11233         92 QVSIGLAPGTAASSITMPLLQAVRAE--FPEIVIYLHEN--------------------SGAVLNEKLINGQLDMAVIYE  149 (305)
T ss_pred             EEEEEEECCHHHHHHHHHHHHHHHHH--CCCEEEEEECC--------------------CHHHHHHHHHCCCEEEEEEEC
T ss_conf             49999962155665369999999997--89429997238--------------------879999998769847999827


Q ss_pred             CCCCCCCCCCCEE--------EEECCCCCCCEEEEECCCCCCCCCCCCCEEE---CCCCCHHH-HHHHH-HCCCCCHHHC
Q ss_conf             4321110122101--------2223656831056652432433245673220---47530288-89984-2377310330
Q gi|254781037|r   85 KDMPTKLLKGLQI--------SAYLPREDIRDVFISHTAQSLKDLALHSVIG---TSSLRRKA-LLLRW-RSDISVIDFR  151 (307)
Q Consensus        85 KDlP~~~~~~l~i--------~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IG---TsS~RR~a-ql~~~-~p~l~~~~iR  151 (307)
                      ...    ++++..        ..+.+++.|.+      ..++.+|.....|.   .++.|+.. +.... .-..++.--=
T Consensus       150 ~~~----~~~l~~~~l~~~~l~lv~~~~~p~~------~i~l~~l~~~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~e~  219 (305)
T PRK11233        150 HSP----VAGVSSQALLKEDLFLVGTQDCPGQ------SVDLNAIAQMNLFLPRDYSAVRLRVDEAFSLRRLTAKVIGEI  219 (305)
T ss_pred             CCC----CCCCEEEEEEECCEEEEECCCCCCC------CCCHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             989----8882899998535899984778878------789999808998987999849999999999779998479999


Q ss_pred             CCHHHHHHHHHCCCCCEEE
Q ss_conf             7679999986378765563
Q gi|254781037|r  152 GKIETRLNKLNNNKAHAIL  170 (307)
Q Consensus       152 GNv~TRl~Kl~~g~~Daii  170 (307)
                      +++++=..-+.+|..-+++
T Consensus       220 ~~~~~i~~~V~~G~Giail  238 (305)
T PRK11233        220 ESIATLTAAIASGMGVTVL  238 (305)
T ss_pred             CCHHHHHHHHHHCCEEEEE
T ss_conf             9699999999979978987


No 62 
>cd00985 Maf_Ham1 Maf_Ham1. Maf, a nucleotide binding protein, has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides, such as hypoxanthine/xanthine NTP, but not standard nucleotides.
Probab=49.44  E-value=7.2  Score=19.50  Aligned_cols=108  Identities=17%  Similarity=0.154  Sum_probs=50.8

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf             22047530288899842377310330767999998637876556301454542162112223368667358543207899
Q gi|254781037|r  126 VIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICI  205 (307)
Q Consensus       126 ~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaI  205 (307)
                      +++|+|+||...++.+.+ +.+.-+.-+++-...+-+.+   ..+..-|   ++.- ..+.+.++ +.++=+.=||+.  
T Consensus         2 iLAS~S~~R~~~l~~~~~-~~~~~~~~~idE~~~~~~~~---~~~~~~A---~~KA-~~v~~~~~-~~~vi~~DT~v~--   70 (131)
T cd00985           2 ILASGSPRRLEELKQIGG-IEFEVLPSDIDETGLKGEPE---DTVEELA---LLKA-RAVAERLP-DAPVIADDTGLV--   70 (131)
T ss_pred             EEECCCHHHHHHHHHCCC-CCEEEECCCCCCCCCCCCHH---HHHHHHH---HHHH-HHHHHHCC-CCEEEEECCEEE--
T ss_conf             996799899999996689-99599679989888888989---9999999---9999-88897779-965996163688--


Q ss_pred             EEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf             9852761245567762397888887889999987177648852899999999
Q gi|254781037|r  206 ETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGS  257 (307)
Q Consensus       206 e~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~  257 (307)
                       +  ++ ++  +-++-|..+.       +.+|+.+.|--|.=+.+.|-+..+
T Consensus        71 -~--~g-~i--~~Kp~~~~~a-------~~~L~~lsgr~h~~~t~v~l~~~~  109 (131)
T cd00985          71 -V--DG-RP--GGKPARFAEA-------LEMLRGLSGRTAEFVTAVALVDPD  109 (131)
T ss_pred             -E--CC-EE--CCCCCCHHHH-------HHHHHHHCCCEEEEEEEEEEEECC
T ss_conf             -8--99-87--3489999999-------998876158869999999999489


No 63 
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=48.78  E-value=11  Score=18.36  Aligned_cols=107  Identities=21%  Similarity=0.280  Sum_probs=56.8

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCC--CCCCCCCHHHCCCCCCCC
Q ss_conf             732204753028889984237731033076799999863787655630145454216211--222336866735854320
Q gi|254781037|r  124 HSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEK--VIKEILNIEDFPPSPGQG  201 (307)
Q Consensus       124 ~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~--~i~~~l~~~~~~PA~gQG  201 (307)
                      --+.+++||||+..|..+.=  .|.-+--+||+...+-..        +..=..||-...  .+...++         ++
T Consensus         4 ~LiLAS~SPrR~elL~~~gi--~f~~~~~~iDE~~~~~~~--------P~~~v~~LA~~KA~~va~~~~---------~~   64 (193)
T COG0424           4 RLILASSSPRRRELLEQLGI--PFEVIPSDIDEPLLKAEE--------PREYVLRLAEEKARAVAARLP---------PD   64 (193)
T ss_pred             CEEEECCCHHHHHHHHHCCC--CEEEECCCCCCCCCCCCC--------HHHHHHHHHHHHHHHHHHHCC---------CC
T ss_conf             28994699899999998799--819806899987665789--------799999999999999998479---------99


Q ss_pred             EEEEEEEC---CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCE
Q ss_conf             78999852---7612455677623978888878899999871776488528999999998
Q gi|254781037|r  202 AICIETHV---NNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGST  258 (307)
Q Consensus       202 aIaIe~r~---~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~  258 (307)
                      ++-|-|-.   -|-   +++.+=.+.   .+   =+.+|+.|.|-.|.=+-++|-++.++
T Consensus        65 ~~VigaDtvv~ldg---rilgKP~~~---~e---A~~~L~~lSG~~h~v~T~v~li~~~~  115 (193)
T COG0424          65 ALVIGADTVVVLDG---RILGKPKDE---EE---AREMLRKLSGRTHQVYTGVALIDPGK  115 (193)
T ss_pred             CEEEECCEEEEECC---EEECCCCCH---HH---HHHHHHHHCCCEEEEEEEEEEEECCC
T ss_conf             87996274999899---982699999---99---99999984698699999999997797


No 64 
>KOG2098 consensus
Probab=48.50  E-value=9.9  Score=18.61  Aligned_cols=16  Identities=13%  Similarity=-0.058  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             8889999999999997
Q gi|254781037|r   14 PLALAHAFETRSSLMD   29 (307)
Q Consensus        14 ~LAl~Qa~~v~~~L~~   29 (307)
                      .--..|.+..+.+|+.
T Consensus         8 ~a~~t~~~~lr~rle~   23 (591)
T KOG2098           8 QAHKTQLDSLRERLER   23 (591)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             6689899999999987


No 65 
>pfam02545 Maf Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea.
Probab=47.40  E-value=9.8  Score=18.62  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             HHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf             999987177648852899999999899
Q gi|254781037|r  234 RAFLAELDGSCKSAIAGFAYCKGSTLY  260 (307)
Q Consensus       234 R~fL~~L~GgC~~PIGa~A~i~~~~l~  260 (307)
                      |.+|+.|.|--|.=+.+.|-+.++...
T Consensus        91 ~~~L~~lsGk~h~v~Tav~l~~~~~~~  117 (193)
T pfam02545        91 REMLRKLSGNVHSVYTGLALISPEKNL  117 (193)
T ss_pred             HHHHHHHCCCCEEEEEEEEEEECCEEE
T ss_conf             999999879966999999999899399


No 66 
>PRK03411 consensus
Probab=46.80  E-value=10  Score=18.53  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=16.3

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCHH
Q ss_conf             3220475302888998423773103
Q gi|254781037|r  125 SVIGTSSLRRKALLLRWRSDISVID  149 (307)
Q Consensus       125 a~IGTsS~RR~aql~~~~p~l~~~~  149 (307)
                      -+++++||||+..|..+.-++++.+
T Consensus         4 lILAS~SprR~~lL~~~gi~f~~~~   28 (194)
T PRK03411          4 LILASTSPWRRALLEKLQIPFECAA   28 (194)
T ss_pred             EEECCCCHHHHHHHHHCCCCCEEEC
T ss_conf             8987899999999987899968979


No 67 
>PRK01839 Maf-like protein; Reviewed
Probab=44.16  E-value=12  Score=18.11  Aligned_cols=32  Identities=16%  Similarity=0.182  Sum_probs=22.0

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHH
Q ss_conf             6732204753028889984237731033076799
Q gi|254781037|r  123 LHSVIGTSSLRRKALLLRWRSDISVIDFRGKIET  156 (307)
Q Consensus       123 ~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~T  156 (307)
                      +.-+.+++|+||+..|..+.-++++  +--++|.
T Consensus        10 p~IILAS~SprR~~lL~~~gi~f~~--~~~~~dE   41 (209)
T PRK01839         10 PFLYLASQSPRRQELLQQLGVRYEL--LLPRPDE   41 (209)
T ss_pred             CCEEECCCCHHHHHHHHHCCCCCEE--ECCCCCC
T ss_conf             8889857999999999878999589--7889987


No 68 
>PRK04222 consensus
Probab=43.75  E-value=12  Score=18.10  Aligned_cols=30  Identities=23%  Similarity=0.405  Sum_probs=16.8

Q ss_pred             CEEECCCCCHHHHHHHHHCCCCCHHHCCCHHH
Q ss_conf             32204753028889984237731033076799
Q gi|254781037|r  125 SVIGTSSLRRKALLLRWRSDISVIDFRGKIET  156 (307)
Q Consensus       125 a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~T  156 (307)
                      -+.+++|+||+..|..+.-++.+.  --|||-
T Consensus         5 iILAS~SprR~~lL~~~gi~F~~~--~~~iDE   34 (191)
T PRK04222          5 LILASTSAYRRELLGRLQLDFDTA--RPEVDE   34 (191)
T ss_pred             EEECCCCHHHHHHHHHCCCCCEEE--CCCCCC
T ss_conf             898479999999999789980997--899998


No 69 
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.56  E-value=19  Score=16.75  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=19.6

Q ss_pred             HCCCCCH--HHCCCHHHHHHHHHCCCCC-EEEEEHHHHHHC
Q ss_conf             2377310--3307679999986378765-563014545421
Q gi|254781037|r  142 RSDISVI--DFRGKIETRLNKLNNNKAH-AILLAYAGIKRL  179 (307)
Q Consensus       142 ~p~l~~~--~iRGNv~TRl~Kl~~g~~D-aiilA~Agl~RL  179 (307)
                      ||...|+  .|+-||.|||..--....| -+||-..|-++|
T Consensus      1184 RPSVDVITGlIKANiPtRIAF~VsSkiDSRTILD~~GAE~L 1224 (1355)
T PRK10263       1184 RPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESL 1224 (1355)
T ss_pred             CCCCCEECCCEECCCHHHHEECCCCCCCCCCCCCCCCHHHH
T ss_conf             99867004624334323310003445663510787588885


No 70 
>PRK01526 Maf-like protein; Reviewed
Probab=41.32  E-value=17  Score=17.12  Aligned_cols=23  Identities=35%  Similarity=0.411  Sum_probs=17.5

Q ss_pred             CCCCCCCCEEECCCCCHHHHHHHHH
Q ss_conf             3324567322047530288899842
Q gi|254781037|r  118 LKDLALHSVIGTSSLRRKALLLRWR  142 (307)
Q Consensus       118 l~~lp~~a~IGTsS~RR~aql~~~~  142 (307)
                      .+.+|  -++|++|+||+..|..+.
T Consensus         5 ~~~~~--iILAS~SprR~eLL~~~g   27 (205)
T PRK01526          5 RKNLP--IILASSSPARIELLNRIK   27 (205)
T ss_pred             CCCCC--EEEECCCHHHHHHHHHCC
T ss_conf             78996--999079999999998779


No 71 
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=38.88  E-value=30  Score=15.50  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=30.6

Q ss_pred             EEEEEEECCCCCEEEEEE--------EECCHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             999999869987899999--------843988899999999999997060563
Q gi|254781037|r  260 YFYGIVLASDGKIFHEVS--------RNGNRCDAINIGRDAAQYIRFISNKNV  304 (307)
Q Consensus       260 ~l~a~v~s~DG~~~i~~~--------~~g~~~~a~~LG~~la~~Ll~~g~k~i  304 (307)
                      ++.+++.++++...+...        ..++.+.+..+|+.+|+..++.|-+++
T Consensus        36 hiyaQiIDD~~~~tl~saST~~k~~~~~~n~~~A~~vG~~ia~~a~~~~I~~v   88 (115)
T PRK05593         36 HIYAQVIDDVKGKTLASASTLEKDLKAGGNKEAAKKVGKLIAERAKAKGIKQV   88 (115)
T ss_pred             EEEEEEEECCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             27999998699979999741424441688499999999999999998799889


No 72 
>PRK03098 consensus
Probab=37.33  E-value=15  Score=17.50  Aligned_cols=111  Identities=15%  Similarity=0.179  Sum_probs=51.8

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf             22047530288899842377310330767999998637876556301454542162112223368667358543207899
Q gi|254781037|r  126 VIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICI  205 (307)
Q Consensus       126 ~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaI  205 (307)
                      +.+++|+||+..|..+.-++.+.+  -|||..+.+-..  -..++...|-.+-..    +...++ +.++=++=|-+   
T Consensus         1 ILAS~S~~R~~lL~~~gi~f~~~~--~~iDE~~~~~~~--p~~~~~~lA~~KA~~----v~~~~~-~~~vI~aDtvv---   68 (185)
T PRK03098          1 ILASGSPRRKELLELAGVPFEIIV--SEVEETIGAYSS--PSEIVQSLALQKASA----VAENNP-DAIVLGADTIV---   68 (185)
T ss_pred             CCCCCCHHHHHHHHHCCCCCEEEC--CCCCCCCCCCCC--HHHHHHHHHHHHHHH----HHHHCC-CCEEEEECEEE---
T ss_conf             979699999999986899959977--999999999969--999999999999999----998789-98799877189---


Q ss_pred             EEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf             9852761245567762397888887889999987177648852899999999899
Q gi|254781037|r  206 ETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLY  260 (307)
Q Consensus       206 e~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~  260 (307)
                      .|   |.+   ++   +-+.+..++   +.+|+.|.|-.|.=+.+.|-+.+++..
T Consensus        69 ~~---~g~---il---gKP~~~~eA---~~~L~~lsGk~h~v~T~v~v~~~~~~~  111 (185)
T PRK03098         69 TY---DGR---IL---GKPSDEEEA---KEMLQLLSGKTHEVYTGVAIIAKDKTV  111 (185)
T ss_pred             EE---CCE---EE---CCCCCHHHH---HHHHHHHCCCEEEEEEEEEEEECCEEE
T ss_conf             71---997---84---697659999---999999779917999899999899899


No 73 
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional
Probab=35.47  E-value=34  Score=15.16  Aligned_cols=169  Identities=16%  Similarity=0.164  Sum_probs=71.6

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r    5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA   84 (307)
Q Consensus         5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl   84 (307)
                      +++||+=-+ .+...--.+...+...  +|++++++..    ||                +.++.+.|.+|++|+|+-+.
T Consensus        68 ~lri~~~~t-~~~~~lp~~l~~f~~~--~P~v~~~l~~----~~----------------~~~~~~~l~~g~~D~ai~~~  124 (269)
T PRK11716         68 ELSLFCSVT-AAYSHLPPILDRFRAE--HPLVEIKLTT----GD----------------AADAVEKVQSGEADLAIAAK  124 (269)
T ss_pred             CEEEEECHH-HHHHHCCHHHHHHHHH--CCCCEEEEEC----CC----------------HHHHHHHHHCCCCCEEEEEC
T ss_conf             269985148-8777546789999998--8894489842----89----------------99999999869955899937


Q ss_pred             CCCCCCCCCCCEEEEECCCCCCCEEEEECCC------------CCCCCCCCCCEEE-CCCCCHHH-HHH-H--HHCCCCC
Q ss_conf             4321110122101222365683105665243------------2433245673220-47530288-899-8--4237731
Q gi|254781037|r   85 KDMPTKLLKGLQISAYLPREDIRDVFISHTA------------QSLKDLALHSVIG-TSSLRRKA-LLL-R--WRSDISV  147 (307)
Q Consensus        85 KDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~------------~~l~~lp~~a~IG-TsS~RR~a-ql~-~--~~p~l~~  147 (307)
                         |...++++....+  .++| -++|.+.+            ..+.++|  .+.- +++.|+.. ++. .  ..|+..+
T Consensus       125 ---p~~~~~~l~~~~l--~~~~-l~~v~p~~~~~~~~~~~~~~~dl~~~p--~il~~~~~~r~~~~~~~~~~~~~p~i~~  196 (269)
T PRK11716        125 ---PETLPSSLAFSPI--DEIP-LVLIAPALPCPVRQQVSQEKPDWSRIP--FILPEHGPARRRIDLWFRRHKIKPNIYA  196 (269)
T ss_pred             ---CCCCCCCEEEEEE--EEEE-EEEEEECCCCHHHCCCCCCHHHHHCCC--EEECCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf             ---8789997699996--5641-899997884154363568844683386--7815898279999999997699971799


Q ss_pred             HHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf             0330767999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r  148 IDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN  211 (307)
Q Consensus       148 ~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d  211 (307)
                       .+ ...++=++-+..| +.-.++....+++.-....+. .++.+...|   ---+++.+|++.
T Consensus       197 -e~-~~~~~i~~~V~~G-~GiailP~~~~~~~~~~~~l~-~l~~~~~~~---~~~i~l~~~~~r  253 (269)
T PRK11716        197 -QV-SGHEAIVSMVALG-CGVGILPEVVLDNSPVRDRVQ-RLEVPPELT---PFELGVCCQKKR  253 (269)
T ss_pred             -EE-CCHHHHHHHHHHC-CEEEEHHHHHHHCCCCCCCEE-EEECCCCCC---CEEEEEEEECCC
T ss_conf             -98-9799999999979-941720599983275579889-974899887---369999997998


No 74 
>PRK01441 Maf-like protein; Reviewed
Probab=34.32  E-value=21  Score=16.51  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=14.5

Q ss_pred             HHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf             99998717764885289999999
Q gi|254781037|r  234 RAFLAELDGSCKSAIAGFAYCKG  256 (307)
Q Consensus       234 R~fL~~L~GgC~~PIGa~A~i~~  256 (307)
                      +..|+.|.|--|.=+.+.|-+..
T Consensus        99 ~~~L~~lsGk~H~v~Tgv~l~~~  121 (207)
T PRK01441         99 SQCLRLLSGRNHRVYTGVCLVTP  121 (207)
T ss_pred             HHHHHHHCCCEEEEEEEEEEEEC
T ss_conf             99999975991799989999989


No 75 
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=33.93  E-value=13  Score=17.73  Aligned_cols=135  Identities=18%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             CCCEEECCCCCHHHHHH--HHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf             67322047530288899--8423773103307679999986378765563014545421621122233686673585432
Q gi|254781037|r  123 LHSVIGTSSLRRKALLL--RWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQ  200 (307)
Q Consensus       123 ~~a~IGTsS~RR~aql~--~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQ  200 (307)
                      .|+.+||+-.|-+-+.-  ..+-.+.++-..|+-...+..+-+++-.|+.+...+-.|++-  +-.+.+     --++-+
T Consensus       207 sgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~GT~F~~~~~~~~~a--rk~Wi~-----~~~~~~  279 (369)
T COG0263         207 SGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLFEPQAKERLNA--RKQWIA-----GALPPA  279 (369)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCEEECCCCCHHHH--HHHHHH-----CCCCCC
T ss_conf             7777775618889999999997699589946998315899971898851893588643341--688862-----478878


Q ss_pred             CEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE---E-ECCEEEEEEEEECCCCCEEEEE
Q ss_conf             07899985276124556776239788888788999998717764885289999---9-9998999999986998789999
Q gi|254781037|r  201 GAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAY---C-KGSTLYFYGIVLASDGKIFHEV  276 (307)
Q Consensus       201 GaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~---i-~~~~l~l~a~v~s~DG~~~i~~  276 (307)
                      |.|-|-.                       -|++++++  .|.--.|.|+-.-   + .++.+.+.     ++|...-+.
T Consensus       280 G~i~iD~-----------------------GA~~Al~~--~gkSLLpaGV~~V~G~F~rGdvV~i~-----~~g~~iarG  329 (369)
T COG0263         280 GEITVDA-----------------------GAVEALLE--QGKSLLPAGVTSVEGNFSRGDVVRIR-----PQGGEIARG  329 (369)
T ss_pred             CEEEECC-----------------------CHHHHHHH--CCCCCCCCCCEEEEEEECCCCEEEEE-----CCCCEEEEE
T ss_conf             5499884-----------------------58999985--69754544326766565598779992-----189516745


Q ss_pred             EEECCHHHHHHHHHHHHH
Q ss_conf             984398889999999999
Q gi|254781037|r  277 SRNGNRCDAINIGRDAAQ  294 (307)
Q Consensus       277 ~~~g~~~~a~~LG~~la~  294 (307)
                      ....+.++.+.+.-.-.+
T Consensus       330 ~v~Y~s~el~~i~G~~s~  347 (369)
T COG0263         330 LVNYSSDELRKIAGHKSS  347 (369)
T ss_pred             ECCCCHHHHHHHHCCCHH
T ss_conf             426799999988487666


No 76 
>PRK09791 putative DNA-binding transcriptional regulator; Provisional
Probab=33.40  E-value=36  Score=14.95  Aligned_cols=176  Identities=15%  Similarity=0.141  Sum_probs=88.0

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r    4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS   83 (307)
Q Consensus         4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS   83 (307)
                      -.++||.=.| ++..---.+...+.+.  +|++++++..    |+                +.++-+.|.+|++|++|.+
T Consensus        95 G~l~Ig~~~~-~~~~~lp~~l~~f~~~--~P~v~i~i~~----~~----------------~~~~~~~l~~g~~D~~i~~  151 (302)
T PRK09791         95 GQINIGMGAS-ISRSLMPAVISRFHQQ--HPQVKVRIME----GQ----------------LVSMINELRQGELDFTINT  151 (302)
T ss_pred             CEEEEEECHH-HHHHHHHHHHHHHHHH--CCCCEEEEEE----CC----------------HHHHHHHHHCCCCCEEEEC
T ss_conf             3399986268-8987119999999998--8797799998----99----------------9999999987997789965


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCEEEEECCC-----CCCCCCCCCCEEE---CCCCCHHHHHH--HHHCCCCCHHHCCC
Q ss_conf             34321110122101222365683105665243-----2433245673220---47530288899--84237731033076
Q gi|254781037|r   84 AKDMPTKLLKGLQISAYLPREDIRDVFISHTA-----QSLKDLALHSVIG---TSSLRRKALLL--RWRSDISVIDFRGK  153 (307)
Q Consensus        84 lKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~-----~~l~~lp~~a~IG---TsS~RR~aql~--~~~p~l~~~~iRGN  153 (307)
                      .  .|...++++...-  --+++.-+++.+++     .++++|....-+.   .++.+|...=.  ......++.-.=++
T Consensus       152 ~--~~~~~~~~l~~~~--l~~~~~~~v~~~~hpl~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~  227 (302)
T PRK09791        152 Y--YQGPYDHEFTFEK--LLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCET  227 (302)
T ss_pred             C--CCCCCCCCEEEEE--EEEEEEEEEECCCCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             6--7887887647999--77401599983898435798999984799387579997999999999967999856999992


Q ss_pred             HHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf             7999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r  154 IETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN  211 (307)
Q Consensus       154 v~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d  211 (307)
                      +++=++-+..|.+-+++-....-..+.-... . .++.++..|   .-.+++.+|++.
T Consensus       228 ~~~~~~lv~~g~gv~ilp~~~~~~~~~~~~l-v-~lpl~~~~~---~~~~~lv~r~~~  280 (302)
T PRK09791        228 FSACISLVAKSDFLSILPEEMGCDPLHGQGL-V-MLPVSEILP---KAAYYLIQRRDS  280 (302)
T ss_pred             HHHHHHHHHHCCEEEEECHHHHHHHHHCCCE-E-EEECCCCCC---CEEEEEEEECCC
T ss_conf             9999999997896796319999878748999-9-997999886---008999998909


No 77 
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase; InterPro: IPR011848    In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis. These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This entry describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of IPR005252 from INTERPRO, corresponding to phosphopantothenate--cysteine ligase activity ..
Probab=33.00  E-value=37  Score=14.90  Aligned_cols=50  Identities=14%  Similarity=0.188  Sum_probs=35.4

Q ss_pred             CCEEEEEEEEEEC--CCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             8338999997327--4115875567486226999999998709836997403
Q gi|254781037|r   35 PHNIVIIPLSTKG--DRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA   84 (307)
Q Consensus        35 ~~~~ei~~i~T~G--D~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl   84 (307)
                      ++++-+|+-|+-=  -...+-+..++-..-=...+|++.+-+..-|+-||||
T Consensus        40 Gh~VtlvTTK~A~kP~~~~~Lsi~Eie~~~~L~~~L~~~v~~kq~d~liHsM   91 (253)
T TIGR02114        40 GHEVTLVTTKRALKPEPQLNLSIKEIETVKDLLTTLKELVAEKQHDILIHSM   91 (253)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             8789787536121888888862486427789999988750125543888851


No 78 
>TIGR01382 PfpI intracellular protease, PfpI family; InterPro: IPR006286   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad .    This group of cysteine peptidases belong to MEROPS peptidase family C56 (Pfp1 endopeptidase, clan PC(C)).   The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallises as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. This family is contained in a larger one of the thiamine biosynthesis protein ThiJ and its homologs.; GO: 0016798 hydrolase activity acting on glycosyl bonds.
Probab=32.37  E-value=8.2  Score=19.14  Aligned_cols=20  Identities=5%  Similarity=0.411  Sum_probs=12.7

Q ss_pred             CHHHHHHHHHCCCCCEEEEE
Q ss_conf             67999998637876556301
Q gi|254781037|r  153 KIETRLNKLNNNKAHAILLA  172 (307)
Q Consensus       153 Nv~TRl~Kl~~g~~DaiilA  172 (307)
                      +||-++.+++..+|||++++
T Consensus        64 ~vd~~~~~v~~~~YDal~ip   83 (189)
T TIGR01382        64 TVDATIDDVDPEDYDALVIP   83 (189)
T ss_pred             EEECCEECCCHHHCCEEEEE
T ss_conf             87441214785256478971


No 79 
>KOG0605 consensus
Probab=31.67  E-value=39  Score=14.76  Aligned_cols=76  Identities=21%  Similarity=0.301  Sum_probs=43.3

Q ss_pred             HCCCCCCCCEEEEE--EECCC---CHHHHHHHH--HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEE
Q ss_conf             73585432078999--85276---124556776--239788888788999998717764885289999999989999999
Q gi|254781037|r  193 DFPPSPGQGAICIE--THVNN---PKAQELVKV--INHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYGIV  265 (307)
Q Consensus       193 ~~~PA~gQGaIaIe--~r~~d---~~i~~il~~--Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~i~~~~l~l~a~v  265 (307)
                      +.+.-.||||-|=+  ||+.|   -...++|++  .--.+--.-|.|||.+|..-++.|-+-. -||.-+.+.|+|-=..
T Consensus       144 e~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKL-yYsFQD~~~LYLiMEy  222 (550)
T KOG0605         144 ELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKL-YYSFQDKEYLYLIMEY  222 (550)
T ss_pred             HHHEEECCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EEEECCCCEEEEEEEE
T ss_conf             333034466530689999726786786410027777764317778889887640477767888-8885078705999971


Q ss_pred             ECCCC
Q ss_conf             86998
Q gi|254781037|r  266 LASDG  270 (307)
Q Consensus       266 ~s~DG  270 (307)
                      + +-|
T Consensus       223 l-PGG  226 (550)
T KOG0605         223 L-PGG  226 (550)
T ss_pred             C-CCC
T ss_conf             3-784


No 80 
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185   Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=31.12  E-value=40  Score=14.71  Aligned_cols=29  Identities=24%  Similarity=0.131  Sum_probs=24.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf             98828997079888899999999999974
Q gi|254781037|r    2 EKKPFRIGTRCSPLALAHAFETRSSLMDV   30 (307)
Q Consensus         2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~   30 (307)
                      ++++|+||||+..=|---|..+.+.|.+.
T Consensus        30 ~~~~iIIGSR~~EkA~EaA~ka~e~l~~~   58 (233)
T TIGR01915        30 VDNEIIIGSRDKEKAEEAAAKALEELGDQ   58 (233)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf             77555770488456999999999999708


No 81 
>TIGR00742 yjbN TIM-barrel protein, yjbN family; InterPro: IPR004653   This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) although NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA . They show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=30.40  E-value=21  Score=16.46  Aligned_cols=119  Identities=14%  Similarity=0.129  Sum_probs=77.2

Q ss_pred             CCCCCCCCCEEECCCCCHHHHHHHHHCC-CCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCC
Q ss_conf             4332456732204753028889984237-731033076799999863787655630145454216211222336866735
Q gi|254781037|r  117 SLKDLALHSVIGTSSLRRKALLLRWRSD-ISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFP  195 (307)
Q Consensus       117 ~l~~lp~~a~IGTsS~RR~aql~~~~p~-l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~  195 (307)
                      +..+-|=---+||+|+...+++-.+-.+ ..+-++.=||.===.|+.+|.|.|+.||.|-+-=    + +-+..-...-.
T Consensus        51 ~~~E~PvAlQlgg~dp~~l~~ca~i~e~h~gydEiNLNVGCPSdrvQng~fGACLMg~a~lVa----~-cv~~M~~~v~i  125 (326)
T TIGR00742        51 SPEEKPVALQLGGSDPNDLAKCAKIAEKHRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVA----D-CVKAMQEAVEI  125 (326)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCHHHCCCHHHHH----H-HHHHHHHHCCC
T ss_conf             767786578507898899999999998645874221566883122204441111116823689----9-99998971578


Q ss_pred             CCCCCCEEEEEEE----CCC--CHHHHHHHHHCCHH--HHHHHHHHHHHHHHH
Q ss_conf             8543207899985----276--12455677623978--888878899999871
Q gi|254781037|r  196 PSPGQGAICIETH----VNN--PKAQELVKVINHED--TWDSVNCERAFLAEL  240 (307)
Q Consensus       196 PA~gQGaIaIe~r----~~d--~~i~~il~~Ind~~--T~~~v~aER~fL~~L  240 (307)
                      |-.=--=|||.-+    ++|  +++.+.++.+.+.-  -..-|-|=.+.|+-|
T Consensus       126 PvtvK~RiGId~~ssdykndSYe~l~~Fv~~v~~~Gec~~FivHARkAwL~Gl  178 (326)
T TIGR00742       126 PVTVKHRIGIDELSSDYKNDSYEELCDFVEIVSGKGECQNFIVHARKAWLSGL  178 (326)
T ss_pred             CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf             82242014756443322323378999999986178861134687899985788


No 82 
>PRK12680 transcriptional regulator CysB-like protein; Reviewed
Probab=30.21  E-value=41  Score=14.61  Aligned_cols=175  Identities=11%  Similarity=0.036  Sum_probs=80.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             28997079888899999999999974089983389999973274115875567486226999999998709836997403
Q gi|254781037|r    5 PFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSA   84 (307)
Q Consensus         5 ~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSl   84 (307)
                      .++|||-.|.-.-+=. .+.....+.  +|++++.+..-                    -..++.+.|.+|++|+|+=+.
T Consensus        94 ~L~Ig~~~t~a~~~LP-~vi~~f~~~--yP~V~l~l~~~--------------------~~~~l~e~l~~g~~Diai~~~  150 (327)
T PRK12680         94 QLTLTTTHTQARFVLP-PAVAQIKQA--YPQVSVHLQQA--------------------AESAALDLLGQGDADIAVVST  150 (327)
T ss_pred             EEEEEEECHHHHHHHH-HHHHHHHHH--CCCCEEEEEEC--------------------CCHHHHHHHHCCCCCEEEECC
T ss_conf             7999984227777568-999999986--89967999989--------------------828899999789940999447


Q ss_pred             CCCCCCCCCC-CEEEEECCCCCCCEEEEECC--------CCCCCCCCCCCEEE--CCCCCHHH-----HHHHHHCCCCCH
Q ss_conf             4321110122-10122236568310566524--------32433245673220--47530288-----899842377310
Q gi|254781037|r   85 KDMPTKLLKG-LQISAYLPREDIRDVFISHT--------AQSLKDLALHSVIG--TSSLRRKA-----LLLRWRSDISVI  148 (307)
Q Consensus        85 KDlP~~~~~~-l~i~a~~~R~d~rD~lv~~~--------~~~l~~lp~~a~IG--TsS~RR~a-----ql~~~~p~l~~~  148 (307)
                      -.   ..++. ..+-+   -.+++-+++.++        ..++++|-....|.  .++.-|..     .-..+.|++.+ 
T Consensus       151 ~~---~~~~~~~~~pl---~~~~~~vvvP~~HpL~~~~~~i~L~~La~~plI~~~~g~~~r~~id~af~~~Gl~P~iv~-  223 (327)
T PRK12680        151 AG---GEPSAGIAVPL---YRWRRLVVVPRGHALDTPRTAPDMAALAEHPLISYDSSTRPGSSLQRAFAQVGLEPSIAL-  223 (327)
T ss_pred             CC---CCCCCCEEEEE---EECCEEEEEECCCCCCCCCCCCCHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEE-
T ss_conf             77---79976547675---223579999789810058999999998089889638998679999999997799764799-


Q ss_pred             HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHH
Q ss_conf             3307679999986378765563014545421621122233686673585432078999852761245567
Q gi|254781037|r  149 DFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELV  218 (307)
Q Consensus       149 ~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il  218 (307)
                       =-.+.++=..-...|- .--|+|.-+..-.   +.--..+|.+...|   .-.--|-.|.+ ..++...
T Consensus       224 -ea~~~d~Ik~~V~~Gl-GV~Ivp~mA~~~~---d~~l~~~~~~~l~~---~~~~~~~~~~~-~~lr~~~  284 (327)
T PRK12680        224 -TALDADLIKTYVRAGL-GVGLVAEMAVNAF---DEDLRAWPAPAPIA---ECIAWAVLPRD-RVLRDYA  284 (327)
T ss_pred             -EECCHHHHHHHHHHCC-EEEECHHHHHCCC---CCCEEEEECCCCCC---CCEEEEEEECC-CHHHHHH
T ss_conf             -9995999999999498-6188164762876---89838940645777---56059999788-4689999


No 83 
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=30.08  E-value=35  Score=15.01  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=36.2

Q ss_pred             CCCEEECCCCCHHH--HHHHHHCCCCCHHHCCCHHHHHHHHHCC
Q ss_conf             67322047530288--8998423773103307679999986378
Q gi|254781037|r  123 LHSVIGTSSLRRKA--LLLRWRSDISVIDFRGKIETRLNKLNNN  164 (307)
Q Consensus       123 ~~a~IGTsS~RR~a--ql~~~~p~l~~~~iRGNv~TRl~Kl~~g  164 (307)
                      ++.+|..|++.|.+  +|+.-.|++.|+-+-|.-++-+++|..-
T Consensus        68 ~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R  111 (161)
T COG3265          68 KHVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKAR  111 (161)
T ss_pred             CCEEEECHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf             81699627887889999854599738999638899999998760


No 84 
>TIGR00172 maf septum formation protein Maf; InterPro: IPR003697   Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein . .
Probab=29.73  E-value=34  Score=15.15  Aligned_cols=20  Identities=30%  Similarity=0.368  Sum_probs=12.5

Q ss_pred             CCCEEECCCCCHHHHHHHHH
Q ss_conf             67322047530288899842
Q gi|254781037|r  123 LHSVIGTSSLRRKALLLRWR  142 (307)
Q Consensus       123 ~~a~IGTsS~RR~aql~~~~  142 (307)
                      ..-+.|+.||||+..|..+-
T Consensus         3 ~~liLAS~SP~R~~LL~~~~   22 (212)
T TIGR00172         3 KELILASTSPRRKELLEELG   22 (212)
T ss_pred             CCCEECCCCHHHHHHHHHHC
T ss_conf             87342478868999999847


No 85 
>pfam10080 DUF2318 Predicted membrane protein (DUF2318). Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.75  E-value=23  Score=16.25  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=18.4

Q ss_pred             HHHHHHHC---CCCCCCEEEEEEEECCEEEEEE
Q ss_conf             99998717---7648852899999999899999
Q gi|254781037|r  234 RAFLAELD---GSCKSAIAGFAYCKGSTLYFYG  263 (307)
Q Consensus       234 R~fL~~L~---GgC~~PIGa~A~i~~~~l~l~a  263 (307)
                      |.++..+|   |||+ ||=.-.++++++|.+..
T Consensus        61 ~~~~~~IG~~~GGCN-PiP~~~~~~~~~i~I~~   92 (102)
T pfam10080        61 RFFLPSIGPKSGGCN-PIPLPYTVDGGNIIIDK   92 (102)
T ss_pred             EEEHHHCCCCCCCCC-CCCCCCEECCCEEEEEH
T ss_conf             975322278788868-64476187499899889


No 86 
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=26.82  E-value=47  Score=14.23  Aligned_cols=105  Identities=20%  Similarity=0.151  Sum_probs=71.7

Q ss_pred             CCCHHHCCCHHHHHH---HHH-HHHH---------CCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCC--
Q ss_conf             875567486226999---999-9987---------0983699740343211101221012223656831056652432--
Q gi|254781037|r   52 NRTLTEIGGKGLFTE---EIE-KKLI---------SGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQ--  116 (307)
Q Consensus        52 ~~~l~~~g~kg~Ftk---ele-~aLl---------~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~--  116 (307)
                      +||-.-+|..+|+|+   |== ..|.         ..+|-|    ..|=-++.-=|+-+.-|+|=.|++|+-+++.+.  
T Consensus       232 TRPETm~gDtAvaVhP~DeRYYk~L~GK~v~~PL~~r~ipi----iaDe~VD~EFGTG~VKvTPAHD~ND~~~g~RH~LL  307 (970)
T TIGR00422       232 TRPETMFGDTAVAVHPEDERYYKHLIGKKVILPLTGRKIPI----IADEYVDMEFGTGAVKVTPAHDFNDYEVGKRHNLL  307 (970)
T ss_pred             CCCHHHHHCEEEEECCCCCHHHHHHCCCEEEECCCCCEEEE----ECCCCCCCCCCCCEEEEECCCCCCCHHHCCEECCC
T ss_conf             67225642828876789704578554988972456768437----61775462417512776087497760013412114


Q ss_pred             CC-------CCCCCCC-EEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHH
Q ss_conf             43-------3245673-220475302888998423773103307679999986
Q gi|254781037|r  117 SL-------KDLALHS-VIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKL  161 (307)
Q Consensus       117 ~l-------~~lp~~a-~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl  161 (307)
                      .+       ..|.++| +++|+.. ...-+-..|..|.+.+-|-+|=.+|++.
T Consensus       308 e~i~~l~~dG~Lne~a~~~~tG~~-~~Y~iP~~y~GL~~~eAR~kiv~~L~~~  359 (970)
T TIGR00422       308 EFINILDEDGLLNENAEVIDTGKE-DVYAIPGEYQGLERFEARKKIVEDLKEE  359 (970)
T ss_pred             CHHHHCCCCCCCCCEECEEECCCC-CCCCCCHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             143331799750110011007772-3310652205888899999999999866


No 87 
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001    This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=26.39  E-value=48  Score=14.18  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=37.5

Q ss_pred             CCEEECCCCCHHH--HHH----HHHCCCCCHHHCCCHHHHHHHHHC--CCCC
Q ss_conf             7322047530288--899----842377310330767999998637--8765
Q gi|254781037|r  124 HSVIGTSSLRRKA--LLL----RWRSDISVIDFRGKIETRLNKLNN--NKAH  167 (307)
Q Consensus       124 ~a~IGTsS~RR~a--ql~----~~~p~l~~~~iRGNv~TRl~Kl~~--g~~D  167 (307)
                      +.+|+.|||-|++  .|+    .-.|.+.|+-+.|.-++=+++|.+  |.|=
T Consensus        79 ~~~~~CSALKr~YRD~LR~s~~~~~~~~~FiyL~~~~~~~~~R~~~RkGHFM  130 (175)
T TIGR01313        79 LVIITCSALKRKYRDILRSSLEEAEPELHFIYLSGSKEVILKRMKSRKGHFM  130 (175)
T ss_pred             CEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCC
T ss_conf             4478840111355566542202689843788636898999999610789986


No 88 
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=25.59  E-value=49  Score=14.09  Aligned_cols=170  Identities=15%  Similarity=0.125  Sum_probs=83.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             82899707988889999999999997408998338999997327411587556748622699999999870983699740
Q gi|254781037|r    4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHS   83 (307)
Q Consensus         4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHS   83 (307)
                      -.|+||+=.|-..-. --.+.....+.  +|++++++...                    .+.++.+.|.+|++|+|+=+
T Consensus        81 g~l~Ig~~~~~~~~~-l~~~l~~f~~~--~P~i~v~i~~~--------------------~~~~~~~~l~~~~~D~a~~~  137 (278)
T PRK09986         81 GRIELGVVGTALWGR-MRPAMRHFLKE--NPNVEVLFREK--------------------SPSMQMALLERRELDAGIWR  137 (278)
T ss_pred             CCEEEEECHHHHHHH-HHHHHHHHHHH--CCCEEEEEEEC--------------------CHHHHHHHHHCCCCCEEEEC
T ss_conf             733687421688876-42899999987--89839999978--------------------86999999977997589963


Q ss_pred             CCCCCCCCCCCCE--------EEEECCCCCCCEEEEECCCCCCCCCCCCCEEEC--CCCCHHHHHHHHH--CCC--CCHH
Q ss_conf             3432111012210--------122236568310566524324332456732204--7530288899842--377--3103
Q gi|254781037|r   84 AKDMPTKLLKGLQ--------ISAYLPREDIRDVFISHTAQSLKDLALHSVIGT--SSLRRKALLLRWR--SDI--SVID  149 (307)
Q Consensus        84 lKDlP~~~~~~l~--------i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGT--sS~RR~aql~~~~--p~l--~~~~  149 (307)
                      +   |...++++.        +..+.+++.|   +-.++..++++|...-.|..  .+..+. ++....  .++  .+.-
T Consensus       138 ~---~~~~~~~~~~~~l~~~~~~~~~~~~hp---la~~~~i~~~~l~~~~~i~~~~~~~~~~-~~~~~~~~~g~~~~~~~  210 (278)
T PRK09986        138 M---ALEPNPGFTSLRLHESAFAVAVPEEHL---LASKSSVPLKALRNEYFVTLPSVHSDWG-FLQRVCQQAGFSPQIIR  210 (278)
T ss_pred             C---CCCCCCCCEEEEEEECCCEEEECCCCC---CCCCCCCCHHHHCCCCEEEECCCCCHHH-HHHHHHHHCCCCCCEEE
T ss_conf             7---777887742688774163799659873---3369999999985999798679986699-99999997799851799


Q ss_pred             HCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf             30767999998637876556301454542162112223368667358543207899985276
Q gi|254781037|r  150 FRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN  211 (307)
Q Consensus       150 iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d  211 (307)
                      -=.+.++=+.-+..|-.=+ +++. -+.+....+.....|+  ..+|.    -+++.-|+++
T Consensus       211 ~~~~~~~~~~~V~~G~Gia-ilp~-~~~~~~~~~v~~~Pl~--~~~~~----~~~lv~~~~~  264 (278)
T PRK09986        211 EVNEPQTVLAMVSMGIGIT-LVAD-SYAQMPWPGVVFRPLK--ERIPA----DLYIVYHQQQ  264 (278)
T ss_pred             EECCHHHHHHHHHHCCEEE-EEHH-HHHCCCCCCEEEEECC--CCCCE----EEEEEECCCC
T ss_conf             9998999999999799899-8417-7742378999999889--99803----8999984999


No 89 
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=25.05  E-value=16  Score=17.32  Aligned_cols=82  Identities=20%  Similarity=0.083  Sum_probs=57.6

Q ss_pred             CCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEE---EEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHC
Q ss_conf             98369974034321110122101222365683105---665243243324567322047530288899842377310330
Q gi|254781037|r   75 GEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDV---FISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFR  151 (307)
Q Consensus        75 g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~---lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iR  151 (307)
                      +.=-+-=||.++.+...+..-++.| -.|+..+|.   -|+..  -+-|- .|.+.+-.|+||-.-+.-+-|.-.++||=
T Consensus        68 nQPP~IPHsi~~Yqvtkn~N~CLsC-H~~e~s~~tGAt~IS~T--Hfmdr-dg~v~a~vSPRRYFClQCHVPQaD~kPlV  143 (155)
T COG3043          68 NQPPMIPHSIEGYQVTKNTNRCLSC-HSVENSRTTGATRISPT--HFMDR-DGKVLADVSPRRYFCLQCHVPQADVKPLV  143 (155)
T ss_pred             CCCCCCCCCCCCCEEECCCCHHHHC-CCHHHHHHCCCCCCCCC--EEECC-CCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf             7999776334671542253440213-68877866189756742--14656-88863555753034310346601266567


Q ss_pred             CCHHHHHHH
Q ss_conf             767999998
Q gi|254781037|r  152 GKIETRLNK  160 (307)
Q Consensus       152 GNv~TRl~K  160 (307)
                      ||-=.++.+
T Consensus       144 ~N~F~p~~~  152 (155)
T COG3043         144 GNTFKPMKG  152 (155)
T ss_pred             CCCCCCCHH
T ss_conf             876665210


No 90 
>pfam02621 DUF178 Putative periplasminc binding protein (DUF178). This family of proteins belong to the periplasmic binding protein clan.
Probab=24.31  E-value=52  Score=13.93  Aligned_cols=101  Identities=19%  Similarity=0.298  Sum_probs=54.9

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCC-----CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHH
Q ss_conf             99999998709836997403432111-----0122101222365683105665243243324567322047530288899
Q gi|254781037|r   65 TEEIEKKLISGEIDCAVHSAKDMPTK-----LLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLL  139 (307)
Q Consensus        65 tkele~aLl~g~iDiAVHSlKDlP~~-----~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~  139 (307)
                      ..+|...|++|++|++.=|.=..|..     +-|++.|   --.....-|++..+ ..+.+   ..+|..++--+.+.++
T Consensus        34 P~~Ln~~l~~g~lDv~~iSs~~y~~~~~~y~ilp~~~i---~s~G~v~Svll~s~-~p~~~---~~~Ial~~~S~TS~~L  106 (248)
T pfam02621        34 PETLNRLLLEGELDVAAISSIAYARIADDYALLPDLSI---AALGRVYSVLLVSR-EELEG---KLRVALPGESTTSVLL  106 (248)
T ss_pred             HHHHHHHHHCCCCCEEECCHHHHHHCHHHHEECCCCEE---EEECCCCCEEEEEC-CCCCC---CCEEECCCCCHHHHHH
T ss_conf             99999999869998875589999857202315777458---85279751389956-88676---8728769977899999


Q ss_pred             H--HHCC-CCCHHHCCCHHHHHHHHHCCCCCE-EEEEHHHH
Q ss_conf             8--4237-731033076799999863787655-63014545
Q gi|254781037|r  140 R--WRSD-ISVIDFRGKIETRLNKLNNNKAHA-ILLAYAGI  176 (307)
Q Consensus       140 ~--~~p~-l~~~~iRGNv~TRl~Kl~~g~~Da-iilA~Agl  176 (307)
                      .  +.+. .++.+++.-+.   .-+.++ .|| ++.-..+|
T Consensus       107 lkill~~~~~~~~~~~~~~---~~~~~~-~da~LlIGD~Al  143 (248)
T pfam02621       107 LKLLLPEAYKLVPMPDEIE---PAVLEG-EDAGLLIGDEAL  143 (248)
T ss_pred             HHHHHHHCCCEEECCCHHH---HHHHCC-CCEEEEECHHHC
T ss_conf             9999864572431671466---787448-975899750434


No 91 
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=23.87  E-value=51  Score=14.00  Aligned_cols=129  Identities=19%  Similarity=0.170  Sum_probs=71.5

Q ss_pred             CCCEEECCCCCHHHHHHH--HHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCC-CCCC
Q ss_conf             673220475302888998--4237731033076799999863787655630145454216211222336866735-8543
Q gi|254781037|r  123 LHSVIGTSSLRRKALLLR--WRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFP-PSPG  199 (307)
Q Consensus       123 ~~a~IGTsS~RR~aql~~--~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~-PA~g  199 (307)
                      .++.+||+-.+-+-+.-+  ....+.+.-..|.-+.-|.++.+|+--|+++... -+++.  .+      ..|+. -..-
T Consensus       209 ~~s~~GtGGM~tKl~AA~~a~~~Gi~~iIa~G~~~~~l~~i~~g~~~GT~f~~~-~~~~~--~r------K~Wia~~~~~  279 (372)
T PRK05429        209 AGSGLGTGGMATKLEAARIATRAGIPVVIASGRKPDVLLRLLAGEAVGTLFLPQ-EKPLS--AR------KQWIAHALQP  279 (372)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHCCCCCEEEEECC-CCCCC--HH------HHHHHHCCCC
T ss_conf             877887784377999999999779989992499965899997799726999438-88761--78------9999644778


Q ss_pred             CCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE---E-ECCEEEEEEEEECCCCCEEEE
Q ss_conf             207899985276124556776239788888788999998717764885289999---9-999899999998699878999
Q gi|254781037|r  200 QGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAIAGFAY---C-KGSTLYFYGIVLASDGKIFHE  275 (307)
Q Consensus       200 QGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PIGa~A~---i-~~~~l~l~a~v~s~DG~~~i~  275 (307)
                      +|.|-|    |+                   .|++++.  =.|..-.|+|+...   + .|+.+.    +.+++|..+-+
T Consensus       280 ~G~i~i----D~-------------------GA~~AL~--~~g~SLL~~GI~~v~G~F~~GD~V~----i~~~~g~~iar  330 (372)
T PRK05429        280 AGELVV----DA-------------------GAVKALL--ERGKSLLPAGVTAVEGDFSRGDVVR----IVDPDGREIAR  330 (372)
T ss_pred             CCEEEE----CH-------------------HHHHHHH--HCCCCCCCCCCEEEECEECCCCEEE----EECCCCCEEEE
T ss_conf             708998----85-------------------2899997--5787216514189968765998799----99999989999


Q ss_pred             EEEECCHHHHHHHH
Q ss_conf             99843988899999
Q gi|254781037|r  276 VSRNGNRCDAINIG  289 (307)
Q Consensus       276 ~~~~g~~~~a~~LG  289 (307)
                      .-...+.++...+-
T Consensus       331 G~~nyss~el~~i~  344 (372)
T PRK05429        331 GLVNYSSEELRRIA  344 (372)
T ss_pred             EECCCCHHHHHHHH
T ss_conf             97348999999881


No 92 
>PRK05331 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=23.77  E-value=33  Score=15.23  Aligned_cols=38  Identities=21%  Similarity=0.368  Sum_probs=15.8

Q ss_pred             ECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEE
Q ss_conf             0475302888998423773103307679999986378765563
Q gi|254781037|r  128 GTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAIL  170 (307)
Q Consensus       128 GTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~Daii  170 (307)
                      |+...|+..+++.-.|+++|   -|||+-|  -+-+|++|-+|
T Consensus       189 G~~~~k~a~~lL~~~~~~nf---~G~iEg~--di~~g~~DVvV  226 (317)
T PRK05331        189 GNELVKEAYELLKAAPSINF---IGNVEGR--DILKGTADVVV  226 (317)
T ss_pred             CCHHHHHHHHHHHCCCCCCE---EEEECCC--CCCCCCCCEEE
T ss_conf             67999999999964999805---8010401--14689997899


No 93 
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=23.74  E-value=53  Score=13.86  Aligned_cols=63  Identities=14%  Similarity=0.219  Sum_probs=37.1

Q ss_pred             HHHCCCCCCC-EEEEEEEECCEEEEEEEEECC-CCCEEEEEEE-----------ECCHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             8717764885-289999999989999999869-9878999998-----------43988899999999999997060563
Q gi|254781037|r  238 AELDGSCKSA-IAGFAYCKGSTLYFYGIVLAS-DGKIFHEVSR-----------NGNRCDAINIGRDAAQYIRFISNKNV  304 (307)
Q Consensus       238 ~~L~GgC~~P-IGa~A~i~~~~l~l~a~v~s~-DG~~~i~~~~-----------~g~~~~a~~LG~~la~~Ll~~g~k~i  304 (307)
                      ..+-|...-| +.+|-  .+  -++.+++.++ .|......+.           .++.+.+..+|+.+|+..+++|-+++
T Consensus         7 ~ki~gt~~rpRL~V~r--Sn--khiyaQiIDD~~g~tl~saST~~k~~~~~~~~~~n~e~A~~vG~~ia~~a~~~gI~~V   82 (109)
T CHL00139          7 KKIQGTAERPRLSVFR--SN--KHIYAQIIDDTNGKTLVSCSTLDPDVKSNLSIGSTCDASKLVGQKLAKKSLKKGITKV   82 (109)
T ss_pred             HHCCCCCCCCEEEEEE--CC--CEEEEEEEECCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             2604899988899997--08--8189999987999899996233677765514786699999999999999998799999


No 94 
>pfam04261 Dyp_perox Dyp-type peroxidase family. This family of dye-decolourising peroxidases lack a typical heme-binding region.
Probab=23.36  E-value=54  Score=13.82  Aligned_cols=57  Identities=9%  Similarity=0.037  Sum_probs=29.2

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC-----CCCEEEEEEEE-----CC--EEEEEEEEECCCC
Q ss_conf             4556776239788888788999998717764-----88528999999-----99--8999999986998
Q gi|254781037|r  214 AQELVKVINHEDTWDSVNCERAFLAELDGSC-----KSAIAGFAYCK-----GS--TLYFYGIVLASDG  270 (307)
Q Consensus       214 i~~il~~Ind~~T~~~v~aER~fL~~L~GgC-----~~PIGa~A~i~-----~~--~l~l~a~v~s~DG  270 (307)
                      ++.+.-.++.++....-+-|+.|=+...-|-     ..|.-+|....     ++  .|.=+++-|+..|
T Consensus       187 vqri~h~l~~Wd~l~~~eQE~viGR~k~~gapL~~~~~p~~SHv~~a~~~~~~~~~~ilRr~~py~d~g  255 (311)
T pfam04261       187 VQRILHDLEAWDRLPLEEQEDVIGRRKSDGAELDGDVKPADSHVRLANPKEDGKGLKILRRSLPYGDVG  255 (311)
T ss_pred             HHHHHHCHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             328765878671699989998619646889837878777310587567786688775786888989889


No 95 
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=22.86  E-value=55  Score=13.75  Aligned_cols=112  Identities=19%  Similarity=0.240  Sum_probs=67.9

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCC--EEECCCCCHHHHHHHHH
Q ss_conf             9999999870983699740343211101221012223656831056652432433245673--22047530288899842
Q gi|254781037|r   65 TEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHS--VIGTSSLRRKALLLRWR  142 (307)
Q Consensus        65 tkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a--~IGTsS~RR~aql~~~~  142 (307)
                      +-|| .+++...+++.=|++=|==+  ++  +|.++.|.++- |+|+++       |+.|.  +++-+-+-|        
T Consensus        16 ~pei-~~~l~~~v~i~e~GaLDgls--~~--eI~~~aP~~ge-~~LvTR-------L~DG~~v~~s~~~v~~--------   74 (221)
T pfam07302        16 LPEI-TEHLGEPIEITEIGALDGLS--RE--EIAALAPGPGE-DVLVTR-------LRDGQQVTVSKQKIER--------   74 (221)
T ss_pred             HHHH-HHHHCCCCCEEEECCCCCCC--HH--HHHHHCCCCCC-CEEEEE-------ECCCCEEEEEHHHHHH--------
T ss_conf             6999-98708997289843557999--99--99971999998-441687-------0699878988899889--------


Q ss_pred             CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCC----C-CCCEEEEEEEC
Q ss_conf             3773103307679999986378765563014545421621122233686673585----4-32078999852
Q gi|254781037|r  143 SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPS----P-GQGAICIETHV  209 (307)
Q Consensus       143 p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA----~-gQGaIaIe~r~  209 (307)
                                -++..|++|++..||.|+|...|--. ++..+.. .+.|+.++|.    . +-+-+||-+-.
T Consensus        75 ----------~lq~~i~~Le~~G~d~ilLlCTG~F~-~l~~~~~-ll~P~ril~~lV~a~~~~~~lGVvvP~  134 (221)
T pfam07302        75 ----------RLQQVIEKLDKEGVDVILLLCTGEFP-KLSARNL-LLEPQRILPPLVASIVDGHQLGVIVPL  134 (221)
T ss_pred             ----------HHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCC-EEEHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             ----------89999999986799899996147789-8656772-441188678999986789859999557


No 96 
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=21.89  E-value=58  Score=13.63  Aligned_cols=90  Identities=17%  Similarity=0.257  Sum_probs=52.5

Q ss_pred             CCCCCEEECCCCCHHH--HHHHHHCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHC-CCC
Q ss_conf             4567322047530288--8998423773103307679999986378765563014545421621122233686673-585
Q gi|254781037|r  121 LALHSVIGTSSLRRKA--LLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDF-PPS  197 (307)
Q Consensus       121 lp~~a~IGTsS~RR~a--ql~~~~p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~-~PA  197 (307)
                      -..+++|..|.++|.+  +|+...|++.|+-+.|+-+.=.++|..-+  +=.|...      |.+  +| |  +.+ .|.
T Consensus        79 ~~~~~VlaCSALKr~YRd~Lr~~~~~~~fv~L~g~~~~i~~Rl~~R~--~HFmp~~------LL~--SQ-f--~tLE~P~  145 (177)
T PRK11545         79 TNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARK--GHFFKTQ------MLV--TQ-F--ETLQEPG  145 (177)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCC--CCCCCHH------HHH--HH-H--HHHCCCC
T ss_conf             69966998701119999999806997599997299999999997464--6899878------999--89-9--9817999


Q ss_pred             C-CCCEEEEEEECC-CCHHHHHHHHHCC
Q ss_conf             4-320789998527-6124556776239
Q gi|254781037|r  198 P-GQGAICIETHVN-NPKAQELVKVINH  223 (307)
Q Consensus       198 ~-gQGaIaIe~r~~-d~~i~~il~~Ind  223 (307)
                      + -.+++.|-+... +.-+.++++.|..
T Consensus       146 ~~E~~~~~vdi~~~~e~iv~~il~~l~~  173 (177)
T PRK11545        146 ADETDVLVVDIDQPLEGVVASTIEVIKK  173 (177)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             8889869997899999999999999975


No 97 
>cd03575 NTR_WFIKKN NTR domain, WFIKKN subfamily; WFIKKN proteins contain a C-terminal NTR domain and are putative secreted proteins which may be multivalent protease inhibitors that act on serine proteases as well as metalloproteases. Human WFIKKN and a related protein sharing the same domain architecture were observed to have distinct tissue expression patterns. WFIKKN is also referred to as growth and differentiation factor-associated serum protein-1 (GASP-1). It inhibits the activity of mature myostatin, a specific regulator of skeletal muscle mass and a member of the TGFbeta superfamily.
Probab=21.77  E-value=52  Score=13.93  Aligned_cols=25  Identities=28%  Similarity=0.159  Sum_probs=18.7

Q ss_pred             CCCCCCCCCEEECCCCCHHHHHHHH
Q ss_conf             4332456732204753028889984
Q gi|254781037|r  117 SLKDLALHSVIGTSSLRRKALLLRW  141 (307)
Q Consensus       117 ~l~~lp~~a~IGTsS~RR~aql~~~  141 (307)
                      ...-|.++|-|++||.||..-|+..
T Consensus        82 Gmavl~pdSfv~~ss~rRv~klrE~  106 (109)
T cd03575          82 GMAVLQPDSYVRASSERRVRKLREV  106 (109)
T ss_pred             CEEEECCCCEECCCCHHHHHHHHHH
T ss_conf             8577557762100438899999998


No 98 
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=21.70  E-value=46  Score=14.26  Aligned_cols=34  Identities=38%  Similarity=0.495  Sum_probs=15.7

Q ss_pred             HHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEE
Q ss_conf             54542162112223368667358543207899985
Q gi|254781037|r  174 AGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETH  208 (307)
Q Consensus       174 Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r  208 (307)
                      -|..|+++. .|.+....=..+++.|||+|-+|--
T Consensus        63 ~g~~r~gwe-pI~d~gn~I~L~~p~g~~aIslEpg   96 (456)
T COG3572          63 DGMQRLGWE-PIMDVGNIIGLVEPIGQGAISLEPG   96 (456)
T ss_pred             HHHHHCCCE-EECCCCCEEEECCCCCCCEEEECCC
T ss_conf             556316840-2024565455315788842796468


No 99 
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=21.50  E-value=45  Score=14.35  Aligned_cols=25  Identities=16%  Similarity=0.141  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             2699999999870983699740343
Q gi|254781037|r   62 GLFTEEIEKKLISGEIDCAVHSAKD   86 (307)
Q Consensus        62 g~Ftkele~aLl~g~iDiAVHSlKD   86 (307)
                      .-||.-|-..|-+-.++.-|.+-.+
T Consensus        10 DSFT~ni~~~lr~lg~~v~V~~~d~   34 (221)
T PRK07765         10 DSFVFNLVQYLGQLGVEAEVWRNDD   34 (221)
T ss_pred             CCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9339999999987799189998998


No 100
>TIGR03414 ABC_choline_bnd choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling (PMID:16930487) vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins.
Probab=21.20  E-value=60  Score=13.54  Aligned_cols=62  Identities=18%  Similarity=0.078  Sum_probs=44.6

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             98828997079888899999999999974089983389999973274115875567486226999999998709836997
Q gi|254781037|r    2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV   81 (307)
Q Consensus         2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV   81 (307)
                      +.++|+||.=+=.=+.+.|+.+...|++.    ++++|++...+                +.    +=++|-+|++|+.+
T Consensus         6 ~~~~V~i~~~~W~s~~~~t~v~~~iLE~~----GY~Ve~~~~~~----------------~~----~~~~la~GdiDv~~   61 (290)
T TIGR03414         6 SCKTVRFADVGWTDITATTALASVLLEGL----GYQPKVTLLSV----------------PV----TYAGLKDGDLDVFL   61 (290)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHC----CCCEEEEECCH----------------HH----HHHHHHCCCCEEEE
T ss_conf             09966996068648999999999999974----99648996774----------------99----99999769970787


Q ss_pred             ECCCCCCC
Q ss_conf             40343211
Q gi|254781037|r   82 HSAKDMPT   89 (307)
Q Consensus        82 HSlKDlP~   89 (307)
                      -.+  +|+
T Consensus        62 e~W--~p~   67 (290)
T TIGR03414        62 GNW--MPA   67 (290)
T ss_pred             ECC--CCC
T ss_conf             111--478


No 101
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=21.12  E-value=60  Score=13.53  Aligned_cols=201  Identities=21%  Similarity=0.241  Sum_probs=105.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             88289970798888999999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r    3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH   82 (307)
Q Consensus         3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH   82 (307)
                      .++|+|||-...=..+=++...+.|++.    ++.++.+              ..+|+    |--+..||.+|+|||-+-
T Consensus        32 ~~~I~VgsK~~tE~~IL~~m~~~lle~~----~~kv~~~--------------~~lG~----t~v~~~Al~~G~IDiYpE   89 (300)
T COG1732          32 AKTIVVGSKIFTEQYILGNILKQLLEKN----GIKVEDK--------------TGLGG----TAVVRNALKSGDIDIYPE   89 (300)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEC--------------CCCCC----HHHHHHHHHCCCCCEEEE
T ss_conf             7887983477838899999999999865----9914541--------------68885----299999997598776854


Q ss_pred             C--------CC-CCCCCCCCCCEE------------EEECCCCCCCE--EEEECCC-------CCCCCCCCC---CEEEC
Q ss_conf             0--------34-321110122101------------22236568310--5665243-------243324567---32204
Q gi|254781037|r   83 S--------AK-DMPTKLLKGLQI------------SAYLPREDIRD--VFISHTA-------QSLKDLALH---SVIGT  129 (307)
Q Consensus        83 S--------lK-DlP~~~~~~l~i------------~a~~~R~d~rD--~lv~~~~-------~~l~~lp~~---a~IGT  129 (307)
                      =        +| |=|...++.-..            .-++++-+.++  +|..+..       +++.||.+.   -+.|.
T Consensus        90 YTGt~~~~~lk~~~~~~~dp~~~y~~vK~~~~k~~~l~wl~p~~~nNTyA~av~~~~A~~~~i~TiSDLak~~~~l~~g~  169 (300)
T COG1732          90 YTGTALFSFLKKDPPASKDPKKVYETVKKLDAKQFKLVWLKPAGFNNTYALAVRKDVAEKYNLETISDLAKHSNQLKLGA  169 (300)
T ss_pred             ECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHHCEECC
T ss_conf             32314566345676454798999999999888607978965468776058996198898819816999998665346227


Q ss_pred             CCC--CHH----HHHHHHHCCCC--CHHHCCCHHHHHHHHHCCCCCEEEEEH---HHHHHCCCCCCCCCCCCHHHCCCCC
Q ss_conf             753--028----88998423773--103307679999986378765563014---5454216211222336866735854
Q gi|254781037|r  130 SSL--RRK----ALLLRWRSDIS--VIDFRGKIETRLNKLNNNKAHAILLAY---AGIKRLKKEKVIKEILNIEDFPPSP  198 (307)
Q Consensus       130 sS~--RR~----aql~~~~p~l~--~~~iRGNv~TRl~Kl~~g~~DaiilA~---Agl~RL~l~~~i~~~l~~~~~~PA~  198 (307)
                      ++-  -|.    +.-+.+.=++.  +..+-+.  -+..-+.+|+.|+ ++|+   +.|.+.+|.-.   .-|...|+|  
T Consensus       170 ~~eF~~R~DG~~~l~k~Yg~~~~~~~~~m~~g--l~y~Al~~g~~d~-~~~YsTDg~I~~~~L~VL---kDDK~~fP~--  241 (300)
T COG1732         170 DSEFAERADGLPALQKAYGFDFKPDLRTMDGG--LTYQALKNGTVDA-ADAYSTDGRIAAYGLKVL---KDDKGFFPP--  241 (300)
T ss_pred             CHHHHCCCCCCHHHHHHHCCCCCCCCEECCCH--HHHHHHHCCCCCE-EEECCCCCCCCCCCCEEE---ECCCCCCCC--
T ss_conf             84231365122899998487668874433815--8999987499776-763145522122685797---068767998--


Q ss_pred             CCCEEEE--EEECCCCHHHHHHHHHCC---HHHHHHHHHH
Q ss_conf             3207899--985276124556776239---7888887889
Q gi|254781037|r  199 GQGAICI--ETHVNNPKAQELVKVINH---EDTWDSVNCE  233 (307)
Q Consensus       199 gQGaIaI--e~r~~d~~i~~il~~Ind---~~T~~~v~aE  233 (307)
                      -|++.-|  +..++.+++.+++.++..   .+|+...+++
T Consensus       242 Y~~apvvre~vlk~~Pel~~~l~~l~~kid~~tMq~LNy~  281 (300)
T COG1732         242 YQAAPVVREEVLKKHPELKTILNKLSGKIDTETMQALNYR  281 (300)
T ss_pred             CCCCCEECHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             7656402187776798899999887545899999998777


No 102
>KOG4134 consensus
Probab=20.68  E-value=61  Score=13.47  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=42.9

Q ss_pred             HHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCC---------CCCHHHCCCCCCCCEEEEEEECCCCHH
Q ss_conf             330767999998637876556301454542162112223---------368667358543207899985276124
Q gi|254781037|r  149 DFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKE---------ILNIEDFPPSPGQGAICIETHVNNPKA  214 (307)
Q Consensus       149 ~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~---------~l~~~~~~PA~gQGaIaIe~r~~d~~i  214 (307)
                      .++-.++|-+-+..++ .||||||+-+|+-||-.-.++.         .-+.-.|-|-+||=--|+.-......+
T Consensus        50 ~i~ehld~~vl~y~~~-l~GivLgydnIKvLg~~aki~~D~pf~hlwi~adfyVf~Pk~Gd~LeG~Vn~vS~sHI  123 (253)
T KOG4134          50 LIEEHLDTKVLFYDSG-LDGIVLGYDNIKVLGQTAKIRADDPFMHLWINADFYVFRPKAGDILEGVVNHVSRSHI  123 (253)
T ss_pred             HHHHHHHHHHHHHCCC-CCCEEEEECCEEEECCCCCEECCCCCEEEEEEEEEEEECCCCCCEEEEEEEECCHHHH
T ss_conf             9999866788650467-7725886436276211166203898237999655899778887744456553264352


Done!