HHsearch results for GI: 254781037 and protein with PDBid: 1gtk_A
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=100.00 E-value=0 Score=776.72 Aligned_cols=304 Identities=37% Similarity=0.566 Sum_probs=300.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99882899707988889999999999997408998338999997327411587556748622699999999870983699
Q gi|254781037|r 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA 80 (307)
Q Consensus 1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA 80 (307)
|++|+||||||+|+||+|||++|+++|++.+ |++++||++|+|+||+++++||+++||||+||||||++|++|+||||
T Consensus 1 mm~~~IrIgtR~S~LAl~Qa~~v~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~l~~~ggkg~F~kele~aLl~g~iDiA 78 (313)
T 1gtk_A 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIA 78 (313)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHHHHHHC--TTCEEEEEECC-----------------CTTHHHHHHHHHTTSCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCCHHHCCCCEEEHHHHHHHHHCCCCCEE
T ss_conf 9988669995884999999999999999758--99729999996348434687477728863017999999863876489
Q ss_pred EECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHH
Q ss_conf 74034321110122101222365683105665243243324567322047530288899842377310330767999998
Q gi|254781037|r 81 VHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNK 160 (307)
Q Consensus 81 VHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~K 160 (307)
||||||||+++|+||.|+||++|+|||||||+++++++.+||+|++|||||+||++|++++|||++|++|||||+|||+|
T Consensus 79 VHSlKDlP~~~~~gl~i~av~~R~d~rD~li~~~~~~l~~lp~g~~IGTsS~RR~aql~~~~pdl~i~~iRGNVdTRl~K 158 (313)
T 1gtk_A 79 VHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSK 158 (313)
T ss_dssp EEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHH
T ss_pred EEECCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHH
T ss_conf 75136577546998569999567888887503763556248998988318888999999868999377564769999999
Q ss_pred HHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 63787655630145454216211222336866735854320789998527612455677623978888878899999871
Q gi|254781037|r 161 LNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAEL 240 (307)
Q Consensus 161 l~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L 240 (307)
|++|+|||||||+|||+|||+.+.++++|++++|+|||||||||||||++|.++.++++.|||++|+.|+.+||+||+.|
T Consensus 159 L~~g~~DaiILA~AGl~RLgl~~~~~~~l~~~~~~PA~gQGaiave~r~~d~~~~~~l~~in~~~t~~~~~aER~fL~~L 238 (313)
T 1gtk_A 159 LDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRL 238 (313)
T ss_dssp HHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEEECCHHCCCCCCCCCEEECCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 76789778986400121012113304861602046641001256655178588999998744578999999999999985
Q ss_pred CCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCC
Q ss_conf 776488528999999998999999986998789999984398889999999999999706056337
Q gi|254781037|r 241 DGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFISNKNVFN 306 (307)
Q Consensus 241 ~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~~g~k~iLn 306 (307)
+|||++|||+||++++++++|+|+|+|+||++.+..+.+|+.++++++|+++|++|+++||+++|+
T Consensus 239 ~ggC~sPIga~A~~~~~~l~l~~~v~s~DG~~~i~~~~~g~~~~a~~lG~~la~~Ll~~Ga~ell~ 304 (313)
T 1gtk_A 239 EGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILA 304 (313)
T ss_dssp TCCTTSCEEEEEEEETTEEEEEEEEECTTSSCEEEEEEEECGGGHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 899998649999998999999999998899789999998478999999999999999848999999