HHsearch results for GI: 254781037 and protein with PDBid: 1gtk_A

>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=100.00  E-value=0  Score=776.72  Aligned_cols=304  Identities=37%  Similarity=0.566  Sum_probs=300.1

Q ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             99882899707988889999999999997408998338999997327411587556748622699999999870983699
Q gi|254781037|r    1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCA   80 (307)
Q Consensus         1 M~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiA   80 (307)
                      |++|+||||||+|+||+|||++|+++|++.+  |++++||++|+|+||+++++||+++||||+||||||++|++|+||||
T Consensus         1 mm~~~IrIgtR~S~LAl~Qa~~v~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~l~~~ggkg~F~kele~aLl~g~iDiA   78 (313)
T 1gtk_A            1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIA   78 (313)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHHHHHHC--TTCEEEEEECC-----------------CTTHHHHHHHHHTTSCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCCHHHCCCCEEEHHHHHHHHHCCCCCEE
T ss_conf             9988669995884999999999999999758--99729999996348434687477728863017999999863876489


Q ss_pred             EECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHH
Q ss_conf             74034321110122101222365683105665243243324567322047530288899842377310330767999998
Q gi|254781037|r   81 VHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNK  160 (307)
Q Consensus        81 VHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~K  160 (307)
                      ||||||||+++|+||.|+||++|+|||||||+++++++.+||+|++|||||+||++|++++|||++|++|||||+|||+|
T Consensus        79 VHSlKDlP~~~~~gl~i~av~~R~d~rD~li~~~~~~l~~lp~g~~IGTsS~RR~aql~~~~pdl~i~~iRGNVdTRl~K  158 (313)
T 1gtk_A           79 VHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSK  158 (313)
T ss_dssp             EEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHH
T ss_pred             EEECCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHCCCCCEEECCCHHHHHHHHHHCCCCCEEECCCCHHHHHHH
T ss_conf             75136577546998569999567888887503763556248998988318888999999868999377564769999999


Q ss_pred             HHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             63787655630145454216211222336866735854320789998527612455677623978888878899999871
Q gi|254781037|r  161 LNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAEL  240 (307)
Q Consensus       161 l~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~v~aER~fL~~L  240 (307)
                      |++|+|||||||+|||+|||+.+.++++|++++|+|||||||||||||++|.++.++++.|||++|+.|+.+||+||+.|
T Consensus       159 L~~g~~DaiILA~AGl~RLgl~~~~~~~l~~~~~~PA~gQGaiave~r~~d~~~~~~l~~in~~~t~~~~~aER~fL~~L  238 (313)
T 1gtk_A          159 LDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRL  238 (313)
T ss_dssp             HHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCEEEEECCHHCCCCCCCCCEEECCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             76789778986400121012113304861602046641001256655178588999998744578999999999999985


Q ss_pred             CCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHCC
Q ss_conf             776488528999999998999999986998789999984398889999999999999706056337
Q gi|254781037|r  241 DGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFISNKNVFN  306 (307)
Q Consensus       241 ~GgC~~PIGa~A~i~~~~l~l~a~v~s~DG~~~i~~~~~g~~~~a~~LG~~la~~Ll~~g~k~iLn  306 (307)
                      +|||++|||+||++++++++|+|+|+|+||++.+..+.+|+.++++++|+++|++|+++||+++|+
T Consensus       239 ~ggC~sPIga~A~~~~~~l~l~~~v~s~DG~~~i~~~~~g~~~~a~~lG~~la~~Ll~~Ga~ell~  304 (313)
T 1gtk_A          239 EGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILA  304 (313)
T ss_dssp             TCCTTSCEEEEEEEETTEEEEEEEEECTTSSCEEEEEEEECGGGHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCCCCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf             899998649999998999999999998899789999998478999999999999999848999999