HHsearch results for GI: 254781037 and protein with PDBid: 2a5s_A

>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B*
Probab=95.77  E-value=0.068  Score=31.19  Aligned_cols=171  Identities=15%  Similarity=0.020  Sum_probs=79.0

Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCC------C--CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCC-HHHH
Q ss_conf             99999870983699740343211101------2--2101222365683105665243243324567322047530-2888
Q gi|254781037|r   67 EIEKKLISGEIDCAVHSAKDMPTKLL------K--GLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLR-RKAL  137 (307)
Q Consensus        67 ele~aLl~g~iDiAVHSlKDlP~~~~------~--~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~R-R~aq  137 (307)
                      ++-.+|.+|++|+++-++..-|....      |  ...+.-+.++.++...+-..+.++..++..+..+|+..-- =...
T Consensus        96 ~li~~l~~g~~Di~i~~~tit~eR~~~vdFs~Py~~~~~~ilv~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (284)
T 2a5s_A           96 GMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERN  175 (284)
T ss_dssp             HHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHH
T ss_pred             HHHHHHHCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHCCCCEEEEEECCCHHHHH
T ss_conf             99976638858999958807999995482777624676778986798666635653267033156618999837549999


Q ss_pred             HHHHHCCCCCH--H-HCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCC---CCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf             99842377310--3-30767999998637876556301454542162112---223368667358543207899985276
Q gi|254781037|r  138 LLRWRSDISVI--D-FRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKV---IKEILNIEDFPPSPGQGAICIETHVNN  211 (307)
Q Consensus       138 l~~~~p~l~~~--~-iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~---i~~~l~~~~~~PA~gQGaIaIe~r~~d  211 (307)
                      ++..+|+....  . ---+.+.-+..|.+|++||+|.-.+-+.-+-..+.   +....++..+    +.-..|+-.++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~e~~~~l~~G~vDa~i~d~~~l~~~~~~~~~~~~~~v~~~~~~----~~~~~gia~~k~s  251 (284)
T 2a5s_A          176 IRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIF----ATTGYGIALQKGS  251 (284)
T ss_dssp             HHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGG----GCEEECCEEETTC
T ss_pred             HHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCEEEECCCCCC----CCEEEEEEECCCH
T ss_conf             997655431267982489999999999869987896459999999985899858993588765----7606999981883


Q ss_pred             CHHHHHHHHHCCHHHH--HHHHHHHHHHHHHCCCCC
Q ss_conf             1245567762397888--887889999987177648
Q gi|254781037|r  212 PKAQELVKVINHEDTW--DSVNCERAFLAELDGSCK  245 (307)
Q Consensus       212 ~~i~~il~~Ind~~T~--~~v~aER~fL~~L~GgC~  245 (307)
                      +.    +..+|..-..  ..-..++-.-+-++|-||
T Consensus       252 ~l----~~~in~ai~~l~~~G~~~~l~~KW~~~~c~  283 (284)
T 2a5s_A          252 PW----KRQIDLALLQFVGDGEMEELETLWLTGICH  283 (284)
T ss_dssp             TT----HHHHHHHHHHHHHHTHHHHHHHHHTCCCCC
T ss_pred             HH----HHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
T ss_conf             99----999999999999698999999735569789