HHsearch results for GI: 254781037 and protein with PDBid: 3del_B
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis}
Probab=94.64 E-value=0.25 Score=27.58 Aligned_cols=208 Identities=13% Similarity=0.116 Sum_probs=103.8
Q ss_pred CCCEEEEECCC--HHHHHH--------HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHH
Q ss_conf 88289970798--888999--------99999999974089983389999973274115875567486226999999998
Q gi|254781037|r 3 KKPFRIGTRCS--PLALAH--------AFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKL 72 (307)
Q Consensus 3 ~~~i~IgtR~S--~LAl~Q--------a~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aL 72 (307)
..+|+||+-++ |+.... .-.+.+++.+.- +++++++.+. . .++..+|
T Consensus 10 ~~~l~Vg~~~~~pP~~~~~~~G~~~G~~vDi~~~ia~~l---g~~v~~~~~~----------~----------~~~~~~l 66 (242)
T 3del_B 10 SEKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKL---GKTLDVREFS----------F----------DALILNL 66 (242)
T ss_dssp -CEEEEEECSCBTTTBEECTTSCEESHHHHHHHHHHHHH---TCEEEEEECC----------G----------GGHHHHH
T ss_pred CCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHH---CCCEEEEECC----------H----------HHHHHHH
T ss_conf 996999989988991589999988872999999999996---9976999789----------8----------9999999
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHH
Q ss_conf 7098369974034321110122101222365683105665243---2433245673220475302888998423773103
Q gi|254781037|r 73 ISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTSSLRRKALLLRWRSDISVID 149 (307)
Q Consensus 73 l~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~ 149 (307)
.+|++|+++.++-.-|..... +... -+......-+++.++. .++++| .+.+||...-=-..++...+|+.+++.
T Consensus 67 ~~g~~d~~~~~~~~~~~r~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~Vgv~~gs~~~~~l~~~~~~~i~~ 143 (242)
T 3del_B 67 KQHRIDAVITGMSITPSRLKE-ILMI-PYYGEEIKHLVLVFKGENKHPLPLT-QYRSVAVQTGTYQEAYLQSLSEVHIRS 143 (242)
T ss_dssp HTTSSSEECSSBBCCHHHHTT-EEEE-EEEEEEESEEEEEEESCCSCCCCGG-GSSCEEEETTSHHHHHHHHSTTCCEEE
T ss_pred HCCCCCCCCCCCCCCHHHHHH-CCCC-CCCCCCCCEEEEEECCCCCCHHHHH-CCCCEEEECCCHHHHHHHHCCCCEEEE
T ss_conf 759866100357699889831-3678-6432355326886315433213442-022002425743589998565870798
Q ss_pred HCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCC----CCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHH
Q ss_conf 307679999986378765563014545421621----1222336866735854320789998527612455677623978
Q gi|254781037|r 150 FRGKIETRLNKLNNNKAHAILLAYAGIKRLKKE----KVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHED 225 (307)
Q Consensus 150 iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~----~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~ 225 (307)
+ .+...-+..|.+|++|++|....-+..+--. ......++.. .-.-..++-.+++|+.+.+ .||..-
T Consensus 144 ~-~~~~~~~~~L~~griD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~va~~k~~~~l~~---~ln~al 214 (242)
T 3del_B 144 F-DSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPED-----QWVLGYGIGVASDRPALAL---KIEAAV 214 (242)
T ss_dssp E-SSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGG-----GCEEEEEEEEETTCHHHHH---HHHHHH
T ss_pred E-ECCCHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEEECCCCC-----CCCEEEEEEEECCCHHHHH---HHHHHH
T ss_conf 6-145312568863974399966999999998588763454226876-----5432689999489999999---999999
Q ss_pred HH------HHHHHHHHHHHHHCCCCC
Q ss_conf 88------887889999987177648
Q gi|254781037|r 226 TW------DSVNCERAFLAELDGSCK 245 (307)
Q Consensus 226 T~------~~v~aER~fL~~L~GgC~ 245 (307)
.. ..--.+|-+|..|+-..|
T Consensus 215 ~~l~~~G~~~~I~~ky~l~~~~~~~~ 240 (242)
T 3del_B 215 QEIRKEGVLAELEQKWGLNNLEHHHH 240 (242)
T ss_dssp HHHHHTTHHHHHHHHTTGGGCSSTTT
T ss_pred HHHHHCCHHHHHHHHHCCCHHHHCCC
T ss_conf 99997878999999979954650234