HHsearch results for GI: 254781037 and protein with PDBid: 3g41_A

>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A*
Probab=93.23  E-value=0.45  Score=25.88  Aligned_cols=186  Identities=10%  Similarity=0.116  Sum_probs=92.5

Q ss_pred             CCCCCEEEEECCC--HHHHH---------HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf             9988289970798--88899---------999999999974089983389999973274115875567486226999999
Q gi|254781037|r    1 MEKKPFRIGTRCS--PLALA---------HAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIE   69 (307)
Q Consensus         1 M~~~~i~IgtR~S--~LAl~---------Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele   69 (307)
                      +.+|+++||+-.+  |+...         -.+. .+.+.+.-   +++++++.+.          .          .+..
T Consensus         7 ~~~~~l~Vg~~~~~~P~~~~~~~g~~~G~~~dl-~~~ia~~l---g~~~~~~~~~----------~----------~~~~   62 (246)
T 3g41_A            7 DRNRIWIVGTNATYPPFEYVDAQGEVVGFDIDL-AKAISEKL---GKQLEVREFA----------F----------DALI   62 (246)
T ss_dssp             CCCCEEEEEECSCBTTTBEECTTSCEESHHHHH-HHHHHHHH---TCEEEEEECC----------G----------GGHH
T ss_pred             CCCCCEEEEECCCCCCCEEECCCCCEEEEHHHH-HHHHHHHH---CCCEEEEECC----------H----------HHHH
T ss_conf             058959999899889934899999888729999-99999996---9966999889----------8----------9999


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC-C---CCCCCCCCCCEEECCCCCHHHHHHHHHCCC
Q ss_conf             998709836997403432111012210122236568310566524-3---243324567322047530288899842377
Q gi|254781037|r   70 KKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT-A---QSLKDLALHSVIGTSSLRRKALLLRWRSDI  145 (307)
Q Consensus        70 ~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-~---~~l~~lp~~a~IGTsS~RR~aql~~~~p~l  145 (307)
                      .+|.+|++|++.-++-.-|.. .+.+...- +-...+.-+++.++ .   .++++| .|.+||+-+-=-........|+.
T Consensus        63 ~~l~~g~~d~i~~~~~~~~~r-~~~~~fs~-~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~Igv~~gs~~~~~l~~~~~~  139 (246)
T 3g41_A           63 LNLKKHRIDAILAGMSITPSR-QKEIALLP-YYGDEVQELMVVSKRSLETPVLPLT-QYSSVAVQTGTYQEHYLLSQPGI  139 (246)
T ss_dssp             HHHHTTSSSEECSCCBCCHHH-HTTSEEEE-EECCCBCEEEEEEETTCCSCSCCGG-GSSCEEEETTSHHHHHHHTSTTC
T ss_pred             HHHHCCCCCEEEEECCCCHHH-CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEECCHHHHHHHHCCCC
T ss_conf             999759988796623158666-03434342-3333343321122223444410012-34058885153799999838875


Q ss_pred             CCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCC----CCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf             3103307679999986378765563014545421621----1222336866735854320789998527612455677
Q gi|254781037|r  146 SVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKE----KVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVK  219 (307)
Q Consensus       146 ~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~----~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~  219 (307)
                      +++.+. |.+.-+..|..|+.|+++.-..-...+-..    ......+++     ..-..-.++-.+++|+++.+.+.
T Consensus       140 ~~~~~~-~~~~~~~~L~~GriD~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~k~~~~L~~~in  211 (246)
T 3g41_A          140 CVRSFD-STLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPP-----ECWVLGCGLGVAKDRPEEIQTIQ  211 (246)
T ss_dssp             CEEEES-CHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCG-----GGCBCCEEEEECTTCHHHHHHHH
T ss_pred             EEEEEC-HHHHHHHHHHCCCCCHHHHCHHHHHHHHHHCCCCCCEEECCCC-----CCCCEEEEEEEECCCHHHHHHHH
T ss_conf             389834-0787888987598431130699999999854565302322587-----54430389999698999999999