HHsearch results for GI: 254781037 and protein with PDBid: 3g41_A
>3g41_A Amino acid ABC transporter, periplasmic amino acid-binding protein; aminoacid transporter, structural genomics, bacabs EU FP6 programme; HET: ARG; 2.10A {Chlamydophila pneumoniae} PDB: 3n26_A*
Probab=93.23 E-value=0.45 Score=25.88 Aligned_cols=186 Identities=10% Similarity=0.116 Sum_probs=92.5
Q ss_pred CCCCCEEEEECCC--HHHHH---------HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 9988289970798--88899---------999999999974089983389999973274115875567486226999999
Q gi|254781037|r 1 MEKKPFRIGTRCS--PLALA---------HAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIE 69 (307)
Q Consensus 1 M~~~~i~IgtR~S--~LAl~---------Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele 69 (307)
+.+|+++||+-.+ |+... -.+. .+.+.+.- +++++++.+. . .+..
T Consensus 7 ~~~~~l~Vg~~~~~~P~~~~~~~g~~~G~~~dl-~~~ia~~l---g~~~~~~~~~----------~----------~~~~ 62 (246)
T 3g41_A 7 DRNRIWIVGTNATYPPFEYVDAQGEVVGFDIDL-AKAISEKL---GKQLEVREFA----------F----------DALI 62 (246)
T ss_dssp CCCCEEEEEECSCBTTTBEECTTSCEESHHHHH-HHHHHHHH---TCEEEEEECC----------G----------GGHH
T ss_pred CCCCCEEEEECCCCCCCEEECCCCCEEEEHHHH-HHHHHHHH---CCCEEEEECC----------H----------HHHH
T ss_conf 058959999899889934899999888729999-99999996---9966999889----------8----------9999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECC-C---CCCCCCCCCCEEECCCCCHHHHHHHHHCCC
Q ss_conf 998709836997403432111012210122236568310566524-3---243324567322047530288899842377
Q gi|254781037|r 70 KKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHT-A---QSLKDLALHSVIGTSSLRRKALLLRWRSDI 145 (307)
Q Consensus 70 ~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~-~---~~l~~lp~~a~IGTsS~RR~aql~~~~p~l 145 (307)
.+|.+|++|++.-++-.-|.. .+.+...- +-...+.-+++.++ . .++++| .|.+||+-+-=-........|+.
T Consensus 63 ~~l~~g~~d~i~~~~~~~~~r-~~~~~fs~-~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~Igv~~gs~~~~~l~~~~~~ 139 (246)
T 3g41_A 63 LNLKKHRIDAILAGMSITPSR-QKEIALLP-YYGDEVQELMVVSKRSLETPVLPLT-QYSSVAVQTGTYQEHYLLSQPGI 139 (246)
T ss_dssp HHHHTTSSSEECSCCBCCHHH-HTTSEEEE-EECCCBCEEEEEEETTCCSCSCCGG-GSSCEEEETTSHHHHHHHTSTTC
T ss_pred HHHHCCCCCEEEEECCCCHHH-CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEECCHHHHHHHHCCCC
T ss_conf 999759988796623158666-03434342-3333343321122223444410012-34058885153799999838875
Q ss_pred CCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCC----CCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 3103307679999986378765563014545421621----1222336866735854320789998527612455677
Q gi|254781037|r 146 SVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKE----KVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVK 219 (307)
Q Consensus 146 ~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~----~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~ 219 (307)
+++.+. |.+.-+..|..|+.|+++.-..-...+-.. ......+++ ..-..-.++-.+++|+++.+.+.
T Consensus 140 ~~~~~~-~~~~~~~~L~~GriD~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~k~~~~L~~~in 211 (246)
T 3g41_A 140 CVRSFD-STLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPP-----ECWVLGCGLGVAKDRPEEIQTIQ 211 (246)
T ss_dssp CEEEES-CHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCG-----GGCBCCEEEEECTTCHHHHHHHH
T ss_pred EEEEEC-HHHHHHHHHHCCCCCHHHHCHHHHHHHHHHCCCCCCEEECCCC-----CCCCEEEEEEEECCCHHHHHHHH
T ss_conf 389834-0787888987598431130699999999854565302322587-----54430389999698999999999