HHsearch results for GI: 254781037 and protein with PDBid: 3ir1_A
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=97.92 E-value=0.00023 Score=47.20 Aligned_cols=202 Identities=11% Similarity=0.042 Sum_probs=116.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE--
Q ss_conf 828997079888899999999999974089983389999973274115875567486226999999998709836997--
Q gi|254781037|r 4 KPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV-- 81 (307)
Q Consensus 4 ~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV-- 81 (307)
|+|+||+-..+-+-...+.|...+++. ++++|++.+. |-. ....||.+|+||+.+
T Consensus 1 k~i~vg~~~~p~~~~~~e~vk~~~k~~----Gi~vevv~f~---D~~----------------~~N~AL~~GeiDaN~fQ 57 (245)
T 3ir1_A 1 KEIVFGTTVGDFGDMVKEQIQPELEKK----GYTVKLVEFT---DYV----------------RPNLALAEGELDINVFQ 57 (245)
T ss_dssp CEEEEEEETTHHHHHHHHTHHHHHHTT----TCEEEEEEES---SSS----------------HHHHHHHHTSCSEEEEE
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEEEC---CCC----------------HHHHHHHCCCCCEEHHC
T ss_conf 959998078987999999988999965----9769999956---852----------------17799866996523122
Q ss_pred E--CCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCC----CHHHHHHHHHCCCCCHHHCCCHH
Q ss_conf 4--03432111012210122236568310566524324332456732204753----02888998423773103307679
Q gi|254781037|r 82 H--SAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSL----RRKALLLRWRSDISVIDFRGKIE 155 (307)
Q Consensus 82 H--SlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~----RR~aql~~~~p~l~~~~iRGNv~ 155 (307)
| .|...-.+-.-.|+..+-..=. -=.|-|+++++++++|.|++|+-++- -|...++... -...++.+++
T Consensus 58 h~~yl~~~n~~~g~~L~~v~~~~~~--p~glYS~k~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~---GlI~lk~~~~ 132 (245)
T 3ir1_A 58 HKPYLDDFKKEHNLDITEVFQVPTA--PLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDEL---GWIKLKDGIN 132 (245)
T ss_dssp CHHHHHHHHHHHTCCEEEEEECCBC--CCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHT---TSSEECTTCC
T ss_pred CHHHHHHHHHHCCCCEEEEEEEEEC--CEEEECCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHC---CCEEECCCCC
T ss_conf 7999999999859966998665442--4276516868665679999899745865899999999878---9389658988
Q ss_pred HH------------------------HHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCC
Q ss_conf 99------------------------998637876556301454542162112223368667358543207899985276
Q gi|254781037|r 156 TR------------------------LNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNN 211 (307)
Q Consensus 156 TR------------------------l~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d 211 (307)
.- -+-| .++|+.+.-..-...-|+.....-+.++ .-+-+..+.+|++|
T Consensus 133 ~~~~t~~DI~~Npk~l~~~ev~~a~l~~al--~dvD~avi~~~~~~~agl~~~~~l~~e~------~~~y~~~~vvr~~d 204 (245)
T 3ir1_A 133 PLTASKADIAENLKNIKIVELEAAQLPRSR--ADVDFAVVNGNYAISSGMKLTEALFQEP------SFAYVNWSAVKTAD 204 (245)
T ss_dssp GGGCCGGGEEECTTCCEEEEECGGGSGGGG--GTSSEEEECHHHHHHTTCCGGGCSEECC------CCTTCCEEEEEGGG
T ss_pred CCCCCHHHHHCCCCCCEEEECCHHHHHHHC--CCCCEEEECCHHHHHCCCCHHHCEEECC------CCCEEEEEEEECCC
T ss_conf 664776454155646657876888855532--5677899714069787978234001078------88728999980766
Q ss_pred ---CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf ---1245567762397888887889999987177648852
Q gi|254781037|r 212 ---PKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSAI 248 (307)
Q Consensus 212 ---~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~PI 248 (307)
+++..+.+...+++... |+..-=.|+-.|-
T Consensus 205 ~d~~~ik~l~~a~~s~~v~~-------~i~~~~~G~~~Pa 237 (245)
T 3ir1_A 205 KDSQWLKDVTEAYNSDAFKA-------YAHKRFEGYKSPA 237 (245)
T ss_dssp TTCHHHHHHHHHTTSHHHHH-------HHHHHSTTCBCCT
T ss_pred CCCHHHHHHHHHHCCHHHHH-------HHHHHCCCCEECC
T ss_conf 79899999999977999999-------9998789928844