HHSEARCH alignment of GI: 254781037 and SCOP domain: d1pdaa1

Alignment
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=580.54  Aligned_cols=217  Identities=41%  Similarity=0.643  Sum_probs=212.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             88289970798888999999999999740899833899999732741158755674862269999999987098369974
Q gi|254781037|r    3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVH   82 (307)
Q Consensus         3 ~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVH   82 (307)
                      +|.||||||+|+||+|||++|.+.|++.+  |++++||++|+|+||++++.||+++||||+||+|||++|++|++|||||
T Consensus         1 ~~~IrIgtR~S~LAl~Qa~~v~~~L~~~~--p~~~~ei~~i~T~GD~~~~~~l~~~ggkg~Ftkele~~Ll~~~iDiAVH   78 (217)
T d1pdaa1           1 DNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVH   78 (217)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHHC--TTCEEEEEECCCHHHHC---------CCCTTTHHHHHHHHTTSCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHH
T ss_conf             98479996885999999999999999858--9981899998625876230344342016799999999997076435035


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHH
Q ss_conf             03432111012210122236568310566524324332456732204753028889984237731033076799999863
Q gi|254781037|r   83 SAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLN  162 (307)
Q Consensus        83 SlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~  162 (307)
                      ||||||+++|++|.|+|+++|+||||+||+++++++++||+|++|||||+||++|++++||+++|++|||||+|||+||.
T Consensus        79 S~KDlP~~~~~~l~i~a~~~R~d~rD~li~~~~~~l~~l~~~~~IGTsS~RR~aql~~~~p~l~~~~iRGNv~TRl~Kl~  158 (217)
T d1pdaa1          79 SMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD  158 (217)
T ss_dssp             EGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSTTTSCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHCCCCCEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHH
T ss_conf             33144532577651213335677300100467477736789998234651179999876888754664142343888856


Q ss_pred             CCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHH
Q ss_conf             78765563014545421621122233686673585432078999852761245567762
Q gi|254781037|r  163 NNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVI  221 (307)
Q Consensus       163 ~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~I  221 (307)
                      +|+|||+|||+|||+||++.++++++|++++|+||||||+||||||++|.++.+++++|
T Consensus       159 ~g~~DaiILA~AGL~RL~l~~~i~~~l~~~~~~PA~gQGaiaIe~r~~d~~~~~il~~i  217 (217)
T d1pdaa1         159 NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAAL  217 (217)
T ss_dssp             TTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGG
T ss_pred             CCCCCEEEEEHHHHHHCCCCHHEEEECCHHHCCCHHHHHHEEEEECCCCHHHHHHHHCC
T ss_conf             56867899555678654733301577585544794865054889817999999998549


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain
species: Escherichia coli [TaxId: 562]