HHSEARCH alignment of GI: 254781037 and SCOP domain: d1xs5a_

Alignment
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]}
Probab=97.89  E-value=0.00048  Score=43.58  Aligned_cols=206  Identities=9%  Similarity=0.048  Sum_probs=113.8

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             98828997079888899999999999974089983389999973274115875567486226999999998709836997
Q gi|254781037|r    2 EKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAV   81 (307)
Q Consensus         2 ~~~~i~IgtR~S~LAl~Qa~~v~~~L~~~~~~p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAV   81 (307)
                      +.++||||.=.++-+... ....+.+++    .++++|++.+..                   -.++.+||.+|++|++.
T Consensus         1 ~~~ti~ig~~~~~~~~~l-~~~k~~~k~----~Gi~Ve~v~f~~-------------------g~~~~~Al~~G~iD~~~   56 (240)
T d1xs5a_           1 KDETVGVGVLSEPHARLL-EIAKEEVKK----QHIELRIVEFTN-------------------YVALNEAVMRGDILMNF   56 (240)
T ss_dssp             CCEEEEEEECSTTHHHHH-HHHHHHHHT----TTEEEEEEECSC-------------------HHHHHHHHHHTSSSEEE
T ss_pred             CCCEEEEEECCCCCHHHH-HHHHHHHHH----CCCEEEEEEECC-------------------HHHHHHHHHCCCCCEEC
T ss_conf             994499995479809999-999999997----498799998178-------------------06689999759966661


Q ss_pred             ECCCCCCC----CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCEEECCCCC----HHHHHHHHHCC---------
Q ss_conf             40343211----10122101222365683105665243243324567322047530----28889984237---------
Q gi|254781037|r   82 HSAKDMPT----KLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSVIGTSSLR----RKALLLRWRSD---------  144 (307)
Q Consensus        82 HSlKDlP~----~~~~~l~i~a~~~R~d~rD~lv~~~~~~l~~lp~~a~IGTsS~R----R~aql~~~~p~---------  144 (307)
                        +-..|.    ....+..+.++-.-.....+++++..+++.++..|.+|+++..-    +...++...--         
T Consensus        57 --~~~~~~l~~~~~~~~~~i~~v~~~~~~~~~l~~~~~~s~~d~~~gkkia~p~~~s~~~~~l~~l~~~g~~~~~~~~~~  134 (240)
T d1xs5a_          57 --FQHVPHMQQFNQEHNGDLVSVGNVHVEPLALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGL  134 (240)
T ss_dssp             --EEEHHHHHHHHHHHTCCEEEEEEEEECCCEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCT
T ss_pred             --CCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             --287789999997579728996004667669994687774361489889944787089999999997388401567666


Q ss_pred             -------------CCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECC-
Q ss_conf             -------------731033076799999863787655630145454216211222336866735854320789998527-
Q gi|254781037|r  145 -------------ISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVN-  210 (307)
Q Consensus       145 -------------l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~-  210 (307)
                                   +.+.++...+..    +..++.||.++..--....+........+..+    ...+.+..+.+|++ 
T Consensus       135 ~~~~~di~~~~~~~~~~~~~~~~~a----~~~~~vdaa~~~~p~~~~a~~~~~~~~~~~~~----~~~~~~~~~v~~~~~  206 (240)
T d1xs5a_         135 FATVEDVQQNVRNVVLQEVESALLP----RVFDQVDGAVINGNYAIMAGLSARRDGLAVEP----DASAYANVLVVKRGN  206 (240)
T ss_dssp             TCCGGGEEECTTCCEEEEECGGGHH----HHGGGSSEEEECHHHHHHTTCCTTTTCSEECS----CGGGGCEEEEEETTC
T ss_pred             CCCCCHHHHCCCCCCCCCCCHHHHH----HHHCCCCEEEECCHHHHHHCCCCCCCEEEECC----CCCCEEEEEEEECCC
T ss_conf             6551013325544402357777778----76056658997643888706786655034348----899768999995655


Q ss_pred             --CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             --6124556776239788888788999998717764885
Q gi|254781037|r  211 --NPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKSA  247 (307)
Q Consensus       211 --d~~i~~il~~Ind~~T~~~v~aER~fL~~L~GgC~~P  247 (307)
                        ++.+..+++.++..++..      -+.+..+|+--.|
T Consensus       207 ~~~~~i~~~~~a~~~~e~~~------~I~~~~~g~~~~p  239 (240)
T d1xs5a_         207 EADARVQAVLRALCGGRVRT------YLKERYKGGEVAP  239 (240)
T ss_dssp             TTCHHHHHHHHHHTSHHHHH------HHHHHCTTSSSEE
T ss_pred             CCCHHHHHHHHHHCCHHHHH------HHHHHCCCCEEEC
T ss_conf             39799999999977999999------9998669975537


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Putative lipoprotein (NlpA family)
species: Treponema pallidum [TaxId: 160]