HHSEARCH alignment of GI: 254781037 and SCOP domain: d1xt8a1

Alignment
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}
Probab=94.74  E-value=0.095  Score=28.72  Aligned_cols=153  Identities=10%  Similarity=0.141  Sum_probs=84.4

Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC---CCCCCCCCCCEEECC--CCCHHHHHHHHH
Q ss_conf             999987098369974034321110122101222365683105665243---243324567322047--530288899842
Q gi|254781037|r   68 IEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTA---QSLKDLALHSVIGTS--SLRRKALLLRWR  142 (307)
Q Consensus        68 le~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~~~---~~l~~lp~~a~IGTs--S~RR~aql~~~~  142 (307)
                      .-.+|.+|++|++.-.+..-|.. ...+....  |=-...-+|+.+.+   .++++| .|.+||+-  |.- ..+++..+
T Consensus        65 ~~~~l~~g~~d~~~~~~~~t~~R-~~~~~fs~--p~~~~~~~~~~~~~~~i~~~~dl-~g~~i~v~~gs~~-~~~l~~~~  139 (248)
T d1xt8a1          65 RVEFLKSNKVDIILANFTQTPQR-AEQVDFCS--PYMKVALGVAVPKDSNITSVEDL-KDKTLLLNKGTTA-DAYFTQNY  139 (248)
T ss_dssp             HHHHHHTTSCSEECSSCBCCHHH-HTTEEECC--CCEEEEEEEEEETTCCCCSSGGG-TTSEEEEETTSHH-HHHHHHHC
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHH-HCCEEECC--CCCCCCEEEEEECCCCCCHHHHH-CCCEEEECCCCHH-HHHHHCCC
T ss_conf             34301257632113335544412-31113436--62001115788627631345551-3410353378718-87653112


Q ss_pred             CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHH---
Q ss_conf             37731033076799999863787655630145454216211222336866735854320789998527612455677---
Q gi|254781037|r  143 SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVK---  219 (307)
Q Consensus       143 p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~---  219 (307)
                      |+.+++... +.+.-+++|.+|++|+.+.....+..+-..+. ...+.   +.|...+.-+++-.+++|+++.+.+.   
T Consensus       140 ~~~~i~~~~-s~~~~~~~l~~g~vD~~i~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~i~v~k~~~~l~~~in~~l  214 (248)
T d1xt8a1         140 PNIKTLKYD-QNTETFAALMDKRGDALSHDNTLLFAWVKDHP-DFKMG---IKELGNKDVIAPAVKKGDKELKEFIDNLI  214 (248)
T ss_dssp             TTSEEEEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCT-TEEEE---EEEEEEEEEECCEEETTCHHHHHHHHHHH
T ss_pred             CCCCCCCCC-CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC-CCEEE---CCCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf             232222222-11567776300233322154999999998599-51684---25678775599999799999999999999


Q ss_pred             -HHCCHHHHHHH
Q ss_conf             -62397888887
Q gi|254781037|r  220 -VINHEDTWDSV  230 (307)
Q Consensus       220 -~Ind~~T~~~v  230 (307)
                       .+....+....
T Consensus       215 ~~i~~~G~~~~i  226 (248)
T d1xt8a1         215 IKLGQEQFFHKA  226 (248)
T ss_dssp             HHHHTTTHHHHH
T ss_pred             HHHHHCCHHHHH
T ss_conf             999977779999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Putative amino-acid transporter CjaA
species: Campylobacter jejuni [TaxId: 197]