HHSEARCH alignment of GI: 254781037 and SCOP domain: d2ozza1

Alignment
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}
Probab=97.13  E-value=0.0017  Score=40.02  Aligned_cols=169  Identities=13%  Similarity=0.080  Sum_probs=92.9

Q ss_pred             CCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf             98338999997327411587556748622699999999870983699740343211101221012223656831056652
Q gi|254781037|r   34 PPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISH  113 (307)
Q Consensus        34 p~~~~ei~~i~T~GD~~~~~~l~~~g~kg~Ftkele~aLl~g~iDiAVHSlKDlP~~~~~~l~i~a~~~R~d~rD~lv~~  113 (307)
                      .++.+|++.+.+.+                   +.-++|.+|++|+|+-|.=..-.....+.....+.-  .+. .++.+
T Consensus        39 ~Gl~ve~~~~~g~~-------------------~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~--~~~-~~v~~   96 (228)
T d2ozza1          39 DGIPFYYAHMRGAD-------------------IRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALEL--GPH-TYVGE   96 (228)
T ss_dssp             TTSCEEEEECSCHH-------------------HHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEEC--CTT-SSSCC
T ss_pred             CCCEEEEEEECCCH-------------------HHHHHHHCCCCCEEECCCHHHHHHHHCCCCCEEEEE--ECC-EEECC
T ss_conf             39828999913806-------------------789999769977786171899999863898369997--443-04504


Q ss_pred             CC---CCCCCCCCCCEEECCC--CCHHHHHHHHH--CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCC
Q ss_conf             43---2433245673220475--30288899842--37731033076799999863787655630145454216211222
Q gi|254781037|r  114 TA---QSLKDLALHSVIGTSS--LRRKALLLRWR--SDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIK  186 (307)
Q Consensus       114 ~~---~~l~~lp~~a~IGTsS--~RR~aql~~~~--p~l~~~~iRGNv~TRl~Kl~~g~~DaiilA~Agl~RL~l~~~i~  186 (307)
                      ++   +++++| +|.+||+..  .-+....+...  .+++++++  ....-+.-|.+|+.||.++.......+.......
T Consensus        97 ~~~~i~~~~dL-kGk~vgv~~~s~~~~~l~~~~~~~~~v~~v~~--~~~~~~~al~~G~vDa~v~~~~~~~~~~~~~~~~  173 (228)
T d2ozza1          97 HQLICRKGESG-NVKRVGLDSRSADQKIMTDVFFGDSDVERVDL--SYHESLQRIVKGDVDAVIWNVVAENELTMLGLEA  173 (228)
T ss_dssp             EEEEEETTCGG-GCCEEEECTTCHHHHHHHHHHHTTSCCEEEEC--CHHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEEE
T ss_pred             CCCCCCCHHHC-CCCEEEECCCCHHHHHHHHCCCCCCCEEEEEC--CHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCC
T ss_conf             67666783550-89989966998689999984998345478857--9999999997296229996728789987457666


Q ss_pred             CCCCHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHHHHH
Q ss_conf             3368667358543207899985276124556776239788888
Q gi|254781037|r  187 EILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDS  229 (307)
Q Consensus       187 ~~l~~~~~~PA~gQGaIaIe~r~~d~~i~~il~~Ind~~T~~~  229 (307)
                      ..+..+...+.++.  -.+.+|+++..+..+++.+-+..-...
T Consensus       174 ~~~~~~~~~~~~~~--~vivir~~~~~v~~lv~a~ie~~e~~~  214 (228)
T d2ozza1         174 TPLTDDPRFLQATE--AVVLTRVDDYPMQQLLRAVVDKHALLA  214 (228)
T ss_dssp             EECCSCHHHHHTTC--EEEEEETTCHHHHHHHHHHCCHHHHHH
T ss_pred             CEEECCCCCCCCEE--EEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             31102655566516--999986981999999999996899999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Hypothetical protein YhfZ
species: Shigella flexneri [TaxId: 623]