PSIBLAST alignment of GI: 254781037 and protein with PDB id: 1pda
>gi|157833452|pdb|1PDA|A Chain A, Structure Of Porphobilinogen Deaminase Reveals A Flexible Multidomain Polymerase With A Single Catalytic Site Length = 313
Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats.
Identities = 114/305 (37%), Positives = 166/305 (54%), Gaps = 2/305 (0%)
Query: 1 MEKKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGG 60
M RI TR SPLAL A + LM H P + ++P+ T+GD I + L ++GG
Sbjct: 1 MLDNVLRIATRQSPLALWQAHYVKDKLMASH--PGLVVELVPMVTRGDVILDTPLAKVGG 58
Query: 61 KGLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKD 120
KGLF +E+E L+ D AVHS KD+P + +GL + RED RD F+S+ SL
Sbjct: 59 KGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDA 118
Query: 121 LALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLK 180
L S++GTSSLRR+ L R D+ + RG + TRL+KL+N + AI+LA AG+KRL
Sbjct: 119 LPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLG 178
Query: 181 KEKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAEL 240
E I+ L E P+ GQGA+ IE +++ + +EL+ +NH +T V ERA L
Sbjct: 179 LESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRL 238
Query: 241 DGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQYIRFIS 300
+G+C+ I +A ++ G+V A DG R G DA +G A+ +
Sbjct: 239 EGACQVPIGSYAELIDGEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNG 298
Query: 301 NKNVF 305
+ +
Sbjct: 299 AREIL 303