RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781037|ref|YP_003065450.1| porphobilinogen deaminase
[Candidatus Liberibacter asiaticus str. psy62]
(307 letters)
>gnl|CDD|178840 PRK00072, hemC, porphobilinogen deaminase; Reviewed.
Length = 295
Score = 375 bits (965), Expect = e-104
Identities = 126/292 (43%), Positives = 176/292 (60%), Gaps = 2/292 (0%)
Query: 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKG 62
+ RIGTR S LAL A + L H P + ++P+ TKGD+I + L +IGGKG
Sbjct: 2 MRKIRIGTRGSKLALWQAEWVKDRLKAAH--PGLEVELVPIKTKGDKILDVPLAKIGGKG 59
Query: 63 LFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLA 122
LF +E+E+ L+ GEID AVHS KD+PT+L +GL ++A RED RD +S +SL DL
Sbjct: 60 LFVKELEEALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDYKSLDDLP 119
Query: 123 LHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKE 182
+V+GTSSLRR+A LL R D+ + RG ++TRL KL+ + AI+LA AG+KRL E
Sbjct: 120 EGAVVGTSSLRRQAQLLALRPDLEIKPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLE 179
Query: 183 KVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDG 242
I E L+ E+ P+PGQGA+ IE ++ + EL+ +NHE+T V ERAFL L+G
Sbjct: 180 DRITEYLDPEEMLPAPGQGALGIECRADDEEILELLAPLNHEETRLRVTAERAFLRALEG 239
Query: 243 SCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQ 294
C+ I +A +G L G+V + DG G DA +G + A+
Sbjct: 240 GCQVPIGAYAELEGDELRLRGLVGSPDGSEIIRAEIEGPAADAEELGIELAE 291
>gnl|CDD|161767 TIGR00212, hemC, porphobilinogen deaminase. Biosynthesis of
cofactors, prosthetic groups, and carriers: Heme and
porphyrin.
Length = 292
Score = 305 bits (784), Expect = 8e-84
Identities = 132/288 (45%), Positives = 177/288 (61%), Gaps = 3/288 (1%)
Query: 7 RIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTE 66
RIGTR S LALA A R L V+ P + I+ + T GD+I ++ L +IGGKGLFT+
Sbjct: 2 RIGTRGSKLALAQANLVREQLKAVY--PELDTEIVIIKTTGDKIQDKPLYDIGGKGLFTK 59
Query: 67 EIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLALHSV 126
E+E+ L+ GEID AVHS KD+PT L +GL+I+A L RED RDV +S SL L +
Sbjct: 60 ELEQALLDGEIDLAVHSLKDVPTVLPEGLEIAAVLKREDPRDVLVSRKYLSLDSLPQGAK 119
Query: 127 IGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKEKVIK 186
+GTSSLRRKA L R D+ + RG I+TRL KL+ + AI+LA AG+KRL E VI
Sbjct: 120 VGTSSLRRKAQLKAIRPDLKIEPLRGNIDTRLRKLDEGEYDAIILAEAGLKRLGLEDVIT 179
Query: 187 EILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELDGSCKS 246
E+L+ E P+PGQGAI +E ++ + +E++K INH T ERAFL EL G C++
Sbjct: 180 EVLDPEVMLPAPGQGAIAVECRKDDTEIKEILKEINHPPTRVEATAERAFLKELGGGCQT 239
Query: 247 AIAGFAYCKGSTLYFYGIVLASDGKIFHEVSRNGNRCDAINIGRDAAQ 294
I +A G+ L +V DGK + GN DA +G + A+
Sbjct: 240 PIGAYAEYNGNKLTLIAMVADLDGKEVIREEKEGNIEDAE-LGTEVAE 286
>gnl|CDD|178294 PLN02691, PLN02691, porphobilinogen deaminase.
Length = 351
Score = 280 bits (719), Expect = 2e-76
Identities = 137/299 (45%), Positives = 187/299 (62%), Gaps = 5/299 (1%)
Query: 4 KPFRIGTRCSPLALAHAFETRSSLMDVH--KIPPHNIVIIPLSTKGDRITNRTLTEIGGK 61
P RIGTR SPLALA A+ETR L H + I+ + T GD+I ++ L +IGGK
Sbjct: 42 APIRIGTRGSPLALAQAYETRDLLKAAHPELAEEGALEIVIIKTTGDKILDQPLADIGGK 101
Query: 62 GLFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDL 121
GLFT+EI+ L+SG ID AVHS KD+PT L +G + LPRED+RD FIS A+SL +L
Sbjct: 102 GLFTKEIDDALLSGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFISLKAKSLAEL 161
Query: 122 ALHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKK 181
SV+GT+SLRR++ +L + V++FRG ++TRL KL A LLA AG+KRL
Sbjct: 162 PAGSVVGTASLRRQSQILHKYPHLKVVNFRGNVQTRLRKLQEGVVDATLLALAGLKRLDM 221
Query: 182 EKVIKEILNIEDFPPSPGQGAICIETHVNNPKAQELVKVINHEDTWDSVNCERAFLAELD 241
+ IL+ ++ P+ QGAI I ++ K E + +NHE+T +V CERAFLA LD
Sbjct: 222 TEHATSILSTDEMLPAVAQGAIGIACRTDDDKMLEYLASLNHEETRLAVACERAFLAALD 281
Query: 242 GSCKSAIAGFAY-CKGSTLYFYGIVLASDGKIFHEVSRNGNRC--DAINIGRDAAQYIR 297
GSC++ IAG+A K F G+V + DGK E SR G DA+ +G+DA + ++
Sbjct: 282 GSCRTPIAGYARRDKDGNCDFRGLVASPDGKQVLETSRKGPYVIDDAVAMGKDAGKELK 340
>gnl|CDD|167150 PRK01066, PRK01066, porphobilinogen deaminase; Provisional.
Length = 231
Score = 113 bits (284), Expect = 7e-26
Identities = 67/205 (32%), Positives = 95/205 (46%), Gaps = 11/205 (5%)
Query: 3 KKPFRIGTRCSPLALAHAFETRSSLMDVHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKG 62
K+P RI +R S LA+A E L P I +T+GD L + G
Sbjct: 15 KRPLRIASRQSSLAVAQVHECLRLLRSFF--PKLWFQISTTTTQGDLDQKTPLHLVENTG 72
Query: 63 LFTEEIEKKLISGEIDCAVHSAKDMPTKLLKGLQISAYLPREDIRDVFISHTAQSLKDLA 122
FT++++ ++SG+ D A+HSAKD+P L + A D RD+ + + L
Sbjct: 73 FFTDDVDFLVLSGQCDLAIHSAKDLPEP--PKLTVVAITAGLDPRDLLVYAEKYLSQPLP 130
Query: 123 LHSVIGTSSLRRKALLLRWRSDISVIDFRGKIETRLNKLNNNKAHAILLAYAGIKRLKKE 182
IG+SSLRR+ LL ++D RG IE RL L K AI++A A + RL
Sbjct: 131 RRPRIGSSSLRREELLKLLFPSGIILDIRGTIEERLKLLEEKKYDAIVVAKAAVLRLGLR 190
Query: 183 KVIKEILNIEDFPPS--PGQGAICI 205
+ L PP P QG + I
Sbjct: 191 LPYTKEL-----PPPYHPLQGRLAI 210
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 29.9 bits (67), Expect = 0.82
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 50 ITNRTLTEIGGKGLFTEEIEKKLISGEI-DCAVHSAKDMPTKLLKGLQISAYLPREDIRD 108
+ RT G E ++S ++ D A+ S + KL + L + L RED++
Sbjct: 76 VPERTNEAENGSIPEAMEYLTNILSAKVYDVAIESPLQLAKKLSERLGVKVLLKREDLQP 135
Query: 109 VF 110
VF
Sbjct: 136 VF 137
>gnl|CDD|178846 PRK00078, PRK00078, Maf-like protein; Reviewed.
Length = 192
Score = 27.8 bits (62), Expect = 4.1
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 126 VIGTSSLRRKALLLRWRSDISVI---------DFRGKIETRLNKLNNNKAHAILLAYAGI 176
++ ++S RR+ LL R D VI F+G IE+ + L KA ++
Sbjct: 4 ILASASERRQELLKRILEDFQVIVSDFDESSVPFKGNIESYVMNLAEGKARSVS------ 57
Query: 177 KRLKKEKVI 185
K+L +E I
Sbjct: 58 KKLDQESSI 66
>gnl|CDD|185315 PRK15417, PRK15417, integrase/recombinase; Provisional.
Length = 337
Score = 27.3 bits (60), Expect = 5.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 221 INHEDTWDSVNCERAFLAELDGSCKSAIAGFAYCKGSTLYFYGIVLASDGKIFHEVSR 278
+ H T S E AFL+ L K +++ + L+FYG VL +D E+ R
Sbjct: 50 VRHPATLGSSEVE-AFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGR 106
>gnl|CDD|149553 pfam08538, DUF1749, Protein of unknown function (DUF1749). This
is a plant and fungal family of unknown function. This
family contains many hypothetical proteins.
Length = 303
Score = 27.0 bits (60), Expect = 6.1
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 30 VHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKG 62
+H P +V T G L IGG G
Sbjct: 13 LHTYPER-LVAFEFETSGGLTKPNALLFIGGLG 44
>gnl|CDD|178910 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 27.1 bits (61), Expect = 6.8
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 170 LLA-YAGIKRLKKEKVIKEILNIED 193
LLA AGIKR KK+ + IL D
Sbjct: 70 LLAVAAGIKRNKKKDTLDPILEAPD 94
>gnl|CDD|178781 PLN03243, PLN03243, haloacid dehalogenase-like hydrolase;
Provisional.
Length = 260
Score = 26.9 bits (59), Expect = 7.6
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 30 VHKIPPHNIVIIPLSTKGDRITNRTLTEIGGKGLFTEEIEKKLISGEIDCAVHSAKDMPT 89
V + H I I ST+ R R + +G +G F+ +++ E V+ K P
Sbjct: 118 VQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSV-----VLAAE---DVYRGKPDPE 169
Query: 90 KLLKGLQISAYLPREDI------RDVFISHTAQSLKDLALHSVIGTSSLRRKALLLRWRS 143
+ + ++P I V +H +K +A+ L L++R
Sbjct: 170 MFMYAAERLGFIPERCIVFGNSNSSVEAAHDGC-MKCVAVAGKHPVYELSAGDLVVRRLD 228
Query: 144 DISVIDFR 151
D+SV+D +
Sbjct: 229 DLSVVDLK 236
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 26.6 bits (59), Expect = 8.0
Identities = 6/14 (42%), Positives = 13/14 (92%)
Query: 181 KEKVIKEILNIEDF 194
+EKV+++IL ++D+
Sbjct: 147 REKVVRQILGLDDY 160
>gnl|CDD|180933 PRK07329, PRK07329, hypothetical protein; Provisional.
Length = 246
Score = 26.5 bits (59), Expect = 8.7
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 84 AKDMPTKLLKGLQISAYLPRE-DIRDVFISHTAQSLKDLALH 124
+ ++ KG++I + PRE DI D F+++ LK L++H
Sbjct: 62 NEKYGNRIKKGIEIGYFAPREDDILD-FLANKDFDLKLLSVH 102
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.137 0.401
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,002,450
Number of extensions: 318238
Number of successful extensions: 620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 20
Length of query: 307
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 214
Effective length of database: 3,984,929
Effective search space: 852774806
Effective search space used: 852774806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)